genome.fa.s2.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  111  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33482044--33482113	30	2.4	31	81	13	85	34	2	28	34	1.72
33481942--33482100	30	5.4	30	71	18	127	33	2	28	35	1.71
33481933--33482113	30	6.2	28	72	16	84	35	2	27	33	1.72
33483870--33483924	6	10.0	6	75	18	57	52	1	1	43	1.22
33483872--33483935	27	2.4	27	82	10	69	54	3	1	40	1.25
33483870--33483924	16	3.4	16	87	5	83	52	1	1	43	1.22
33484336--33485073	200	3.7	200	92	0	1152	20	23	20	36	1.95
33492419--33492469	21	2.4	21	80	9	59	19	29	7	43	1.79
33497094--33497288	59	3.3	59	80	11	249	36	2	26	34	1.70
33497095--33497288	58	3.3	58	81	10	252	36	2	26	34	1.70
33497137--33497287	28	5.2	28	69	20	96	35	2	27	35	1.71
33497139--33497331	29	6.6	29	69	18	98	34	3	26	35	1.74
33499084--33499126	11	3.9	11	82	8	52	55	11	0	32	1.36
33502928--33503015	18	4.9	18	76	5	79	38	0	5	55	1.24
33502951--33503035	6	14.0	6	75	7	82	45	0	2	51	1.13
33502917--33503043	36	3.5	34	78	10	119	40	0	5	53	1.24
33502954--33503035	42	2.0	42	85	4	112	45	0	2	52	1.14
33503003--33503043	18	2.3	19	83	8	59	48	0	2	48	1.14
33503334--33503397	25	2.6	25	87	0	92	23	50	10	15	1.76
33505244--33505455	29	7.3	29	70	19	129	30	28	2	38	1.71
33505234--33505479	58	4.2	58	77	7	282	32	26	2	38	1.70
33505145--33505479	117	2.9	116	80	8	315	32	25	2	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33505438--33505544	29	3.7	29	71	23	80	36	26	2	34	1.71
33505584--33505721	58	2.4	59	82	11	160	35	26	2	35	1.71
33505620--33505715	29	3.2	29	70	19	81	34	27	2	36	1.69
33511281--33511349	13	5.5	12	71	13	50	76	5	14	2	1.08
33512694--33513365	101	6.7	100	78	4	681	40	20	25	13	1.90
33512701--33513295	50	11.9	50	65	13	168	38	20	25	14	1.91
33512694--33513365	202	3.3	202	86	2	933	40	20	25	13	1.90
33514154--33514400	40	5.6	40	67	24	140	33	15	16	34	1.91
33513363--33514466	92	12.0	92	96	0	1929	33	15	16	34	1.90
33514445--33514501	28	2.0	28	96	0	105	38	8	19	33	1.82
33514355--33514593	120	2.0	120	95	0	433	34	13	17	34	1.89
33514911--33514978	6	11.3	6	73	6	57	44	0	4	51	1.21
33514889--33514948	25	2.5	24	83	8	68	38	0	6	55	1.27
33515282--33515344	25	2.5	25	94	0	108	20	49	12	17	1.79
33517088--33517170	30	2.8	30	83	5	114	39	25	1	33	1.64
33517152--33517486	29	11.5	29	67	12	125	31	26	2	40	1.69
33517177--33517755	117	5.0	117	77	7	531	32	26	3	37	1.73
33517413--33517520	30	3.7	29	68	23	82	34	27	1	36	1.68
33517092--33517755	59	11.3	58	75	10	430	33	25	3	37	1.72
33517149--33517755	176	3.5	172	79	8	582	32	26	3	37	1.73
33517501--33517579	29	2.7	30	79	11	92	37	27	2	31	1.70
33517499--33517593	29	3.3	28	75	11	84	38	27	4	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33517678--33517767	29	3.1	27	71	21	76	36	28	2	32	1.70
33518979--33519089	58	1.9	58	88	1	168	23	17	12	46	1.82
33523504--33523585	6	13.8	6	75	14	73	47	2	0	50	1.14
33523504--33523581	11	6.7	11	75	13	59	46	2	0	51	1.14
33524313--33524377	19	3.4	18	77	14	60	52	6	3	38	1.42
33524359--33524406	13	3.9	13	74	20	50	64	0	0	35	0.94
33524347--33524390	10	4.5	10	80	5	54	63	2	0	34	1.07
33524352--33524407	23	2.4	23	88	8	78	64	1	0	33	1.04
33524650--33524680	15	2.0	16	93	6	55	19	25	19	35	1.95
33525474--33525811	29	11.5	29	65	12	145	32	28	4	34	1.76
33525418--33525847	59	7.3	58	84	4	506	32	29	3	34	1.76
33525418--33525847	118	3.7	117	85	4	580	32	29	3	34	1.76
33525418--33525848	176	2.4	175	84	4	562	32	29	3	34	1.76
33525419--33525886	235	2.0	235	85	3	629	31	29	4	34	1.79
33535444--33535479	18	1.9	19	88	5	56	80	5	0	13	0.88
33535455--33535497	23	2.0	21	86	9	59	76	4	4	13	1.10
33535517--33535584	31	2.2	30	82	10	84	47	38	1	13	1.52
33536835--33537065	60	3.9	59	82	5	243	37	24	2	35	1.68
33536835--33537040	30	6.9	30	86	2	263	38	26	0	33	1.63
33541235--33541363	66	1.9	69	88	4	201	55	10	20	13	1.67
33543147--33544048	49	18.4	49	70	10	391	37	17	25	19	1.93
33543131--33543632	98	5.1	98	87	0	646	36	16	26	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33543395--33543985	245	2.4	245	83	3	719	37	17	25	19	1.93
33543245--33544048	147	5.5	147	71	9	508	37	17	25	19	1.93
33543147--33543985	98	8.6	98	77	7	537	37	17	25	19	1.93
33545799--33545828	7	4.3	7	100	0	60	43	0	56	0	0.99
33546341--33546452	30	3.8	30	87	2	145	33	29	3	33	1.75
33547430--33547473	14	3.2	14	81	15	56	70	0	2	27	0.99
33548147--33548172	4	6.5	4	100	0	52	23	0	0	76	0.78
33549020--33549065	20	2.3	20	85	7	58	28	0	6	65	1.17
33552761--33552864	29	3.6	28	88	5	154	35	28	6	28	1.83
33552761--33552880	29	4.2	28	84	5	141	37	27	5	29	1.80
33552761--33552880	58	2.1	57	85	4	161	37	27	5	29	1.80
33552895--33552960	30	2.2	31	86	5	91	36	21	4	37	1.74
33554957--33555003	23	2.0	25	83	8	62	36	4	17	42	1.68
33556632--33556679	20	2.2	21	85	10	62	37	2	0	60	1.09
33557060--33557107	20	2.4	20	85	0	69	45	33	0	20	1.52
33558621--33558653	16	2.1	16	88	11	50	63	0	9	27	1.24
33560122--33560159	17	2.2	17	90	9	60	26	0	2	71	1.00
33563702--33563867	69	2.4	68	82	1	188	36	24	19	19	1.95
33563835--33563964	68	1.9	67	81	4	154	32	30	17	19	1.95
33563952--33564151	69	2.9	69	90	0	303	25	29	19	26	1.98
33563960--33564186	69	3.3	69	86	1	204	28	27	17	26	1.98
33564203--33564280	31	2.5	31	87	0	102	29	21	15	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33564883--33564913	15	2.1	15	93	0	53	41	0	0	58	0.98
33566668--33566756	17	5.2	17	72	10	65	37	2	5	55	1.36
33566668--33566756	34	2.6	34	81	10	101	37	2	5	55	1.36
33566687--33566736	23	2.2	23	82	7	57	34	4	8	54	1.49
33568117--33568419	29	10.3	29	72	12	199	35	26	3	33	1.75
33568105--33568419	59	5.4	59	77	12	276	35	26	3	34	1.75
33568434--33568537	28	3.6	28	72	16	88	37	27	2	31	1.72
33572050--33572241	59	3.3	59	76	5	160	38	5	27	28	1.80
33572213--33572328	30	3.9	30	85	2	153	33	5	24	37	1.78
33572198--33572327	59	2.2	59	84	0	152	34	4	25	35	1.77
33575713--33575737	4	6.2	4	100	0	50	48	0	28	24	1.52
33579408--33579570	59	2.8	58	74	6	150	38	5	28	28	1.79
33579543--33579679	59	2.3	59	86	3	177	34	2	26	36	1.72
33579563--33579672	30	3.7	30	82	4	143	34	2	25	37	1.70
33579558--33579694	59	2.3	58	82	7	150	33	4	24	37	1.76
33581102--33581192	6	16.0	6	70	15	68	52	3	2	41	1.30
33581102--33581179	17	4.6	17	84	10	90	53	2	2	41	1.28
33583589--33583637	25	2.0	25	83	0	62	42	2	4	51	1.32
33587237--33587404	59	2.9	59	75	11	166	36	4	22	36	1.74
33587239--33587511	29	9.6	28	71	15	127	35	3	24	36	1.73
33589419--33589456	17	2.2	17	86	9	51	50	2	2	44	1.30
33591056--33591182	51	2.5	52	89	3	186	33	14	23	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33595989--33596022	16	2.1	17	88	5	52	61	5	0	32	1.20
33599657--33599870	29	7.4	28	74	15	141	35	5	25	33	1.79
33599686--33599872	58	3.2	59	80	9	208	36	5	24	33	1.78
33600993--33601060	3	22.0	3	74	16	59	35	0	2	61	1.11
33601704--33601770	17	3.7	17	72	14	53	58	4	0	37	1.19
33601723--33601765	21	2.0	21	90	0	68	60	0	0	39	0.97
33601729--33601771	11	4.0	11	77	17	54	62	0	0	37	0.95
33603980--33604036	29	2.0	28	86	3	78	29	8	19	42	1.81
33607312--33607356	21	2.1	21	83	0	54	24	17	24	33	1.96
33611891--33611915	12	2.1	12	100	0	50	92	8	0	0	0.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135