genome.fa.s2.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  87  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26944780--26944819	20	2.0	20	100	0	80	20	5	30	45	1.72
26945656--26945688	18	1.9	17	88	11	50	54	0	0	45	0.99
26945839--26945926	37	2.4	37	83	9	110	48	6	3	40	1.46
26945941--26945965	3	8.3	3	100	0	50	32	0	0	68	0.90
26946264--26946350	2	44.0	2	84	11	117	50	3	0	45	1.18
26951951--26952004	23	2.3	23	96	0	99	37	25	14	22	1.93
26953597--26953852	90	2.8	89	77	8	250	42	16	9	31	1.80
26953597--26953795	91	2.2	90	82	7	231	45	14	9	31	1.76
26953959--26954039	9	8.9	9	75	14	60	65	2	0	32	1.06
26953959--26954039	19	4.4	18	73	17	60	65	2	0	32	1.06
26954097--26954121	12	2.1	12	100	0	50	76	0	0	24	0.80
26954351--26954453	20	5.4	19	70	14	61	33	2	0	62	1.17
26954351--26954430	9	8.6	9	73	12	63	30	3	1	65	1.18
26954414--26954481	30	2.3	30	87	5	93	35	1	1	61	1.14
26954576--26954782	89	2.3	88	84	5	265	32	11	19	36	1.87
26954884--26954953	29	2.3	29	82	4	77	37	8	11	42	1.72
26969236--26969291	25	2.2	25	81	6	69	73	7	8	10	1.26
26971948--26971973	11	2.4	11	100	0	52	19	15	19	46	1.85
26982310--26982356	17	2.8	17	90	0	67	48	12	21	17	1.79
26998612--26998658	23	2.0	24	87	8	69	36	14	14	34	1.88
27000437--27000466	12	2.5	12	94	0	51	70	0	30	0	0.88
27004322--27004351	16	1.9	16	93	6	53	60	0	16	23	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27015167--27015232	32	2.1	31	83	8	80	65	12	7	15	1.47
27028931--27029310	201	1.9	200	87	1	564	32	19	17	29	1.95
27036237--27036293	21	2.8	20	81	7	69	12	15	29	42	1.84
27036238--27036305	21	3.2	21	77	4	57	13	13	30	42	1.82
27038560--27038940	200	1.9	200	84	1	512	32	19	18	29	1.96
27048148--27048186	21	1.9	21	89	5	62	12	12	7	66	1.43
27056316--27056369	18	2.7	19	77	13	56	3	46	3	46	1.38
27062365--27062404	18	2.2	18	90	0	62	15	20	25	40	1.90
27072007--27072044	16	2.3	17	86	4	51	18	0	7	73	1.06
27077337--27077436	49	2.0	49	94	0	173	31	13	20	36	1.90
27077983--27078018	3	12.0	3	100	0	72	66	0	0	33	0.92
27080954--27081024	33	2.2	32	84	2	88	7	5	21	66	1.37
27080964--27081033	33	2.2	33	82	7	92	7	7	17	68	1.35
27080950--27081051	53	1.9	54	87	2	152	6	5	21	65	1.38
27080990--27081045	20	2.8	19	75	20	51	5	3	19	71	1.21
27081050--27081128	12	6.9	12	73	13	69	7	3	18	69	1.28
27080951--27081065	53	2.2	53	84	3	142	6	6	20	66	1.38
27080968--27081126	53	2.9	52	79	8	140	6	5	20	67	1.33
27081063--27081143	32	2.5	32	80	6	83	11	2	18	67	1.31
27082373--27082411	15	2.6	15	87	0	60	46	0	2	51	1.14
27085963--27086004	20	2.2	20	91	4	68	38	14	16	30	1.89
27092477--27092682	52	4.0	52	89	0	295	28	13	21	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27092483--27092710	104	2.2	104	88	0	332	28	13	21	36	1.91
27093405--27093462	21	2.8	21	81	0	71	27	15	25	31	1.96
27098573--27098718	72	2.0	72	94	0	256	30	24	14	30	1.95
27100995--27101114	57	2.1	57	89	1	179	35	11	11	40	1.78
27106003--27106079	18	4.2	18	86	1	91	27	24	22	25	2.00
27108693--27108762	26	2.5	28	82	13	83	57	5	11	25	1.56
27113637--27113687	15	3.3	15	74	15	59	47	11	19	21	1.81
27117682--27117749	33	2.1	33	100	0	136	29	5	23	41	1.78
27122143--27122232	27	3.3	27	93	0	153	23	21	23	32	1.98
27122137--27122251	54	2.1	54	87	3	169	23	20	22	33	1.97
27128304--27128333	14	2.2	14	94	5	53	36	10	23	30	1.87
27134235--27134284	21	2.4	21	82	0	64	22	18	20	40	1.92
27138328--27138728	200	2.0	200	97	0	757	25	19	17	37	1.93
27139642--27139786	58	2.5	59	90	6	217	15	15	6	62	1.50
27139642--27139815	58	3.1	56	82	8	176	20	15	6	56	1.62
27145020--27145083	15	4.3	15	77	0	65	29	21	20	28	1.98
27145010--27145104	30	3.2	30	78	3	84	27	26	21	25	1.99
27145007--27145092	45	1.9	45	87	0	127	29	25	20	24	1.99
27151502--27151568	15	4.5	15	74	7	64	26	23	20	28	1.99
27151517--27151610	30	3.1	30	78	0	107	25	23	23	27	2.00
27151489--27151604	45	2.6	45	82	5	119	26	25	21	26	1.99
27151502--27151595	15	6.3	15	71	9	57	26	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27156016--27156065	20	2.5	20	81	15	50	42	16	0	42	1.47
27158013--27158433	229	1.9	221	83	8	550	38	9	6	46	1.61
27158368--27158468	50	2.0	50	98	0	193	37	6	3	51	1.48
27159524--27159833	78	4.0	78	81	3	304	33	14	8	43	1.76
27159572--27159828	78	3.3	79	85	2	331	33	15	7	43	1.74
27165397--27165438	5	8.6	5	97	2	77	38	0	0	61	0.96
27167795--27167855	23	2.5	25	89	7	99	16	0	14	68	1.21
27173949--27173990	21	2.0	21	100	0	84	38	19	9	33	1.84
27183596--27183621	13	2.0	13	100	0	52	61	7	15	15	1.55
27190832--27190920	45	2.0	45	90	0	142	16	20	22	40	1.91
27192119--27192219	26	3.7	26	80	14	130	64	9	0	25	1.24
27192129--27192219	32	3.0	32	78	15	122	64	10	0	24	1.25
27192119--27192226	16	6.5	16	66	19	69	63	9	0	26	1.24
27223949--27223980	14	2.3	14	100	0	64	81	0	18	0	0.70
27226698--27226744	24	2.0	23	84	12	60	6	42	2	48	1.40
27246999--27247041	22	2.0	22	85	0	59	46	4	2	46	1.36
27258659--27258729	31	2.2	34	82	10	94	71	1	8	18	1.18
27261243--27261344	40	2.5	40	80	3	125	49	13	24	12	1.77
27261243--27261327	20	4.2	20	77	12	77	47	12	25	14	1.80
27261279--27261337	20	2.9	19	80	14	57	45	10	30	13	1.76
27263857--27263939	37	2.3	35	77	18	82	19	25	6	49	1.71
27265447--27265496	26	1.9	26	84	8	66	68	0	10	22	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27265456--27265501	16	2.8	17	80	12	51	65	0	10	23	1.24
27265451--27265506	21	2.6	21	83	10	69	67	0	8	23	1.18
27265974--27266531	285	2.0	282	85	7	772	42	9	3	43	1.55
27269769--27269822	23	2.4	23	81	12	67	37	7	0	55	1.28
27269777--27269821	22	2.0	22	87	8	65	37	8	0	53	1.32
27269738--27270101	149	2.5	143	84	7	459	43	9	2	44	1.50
27270053--27270100	20	2.3	21	86	10	64	50	4	2	43	1.33
27270796--27271325	42	12.7	42	83	4	637	37	23	18	20	1.94
27278288--27278338	25	2.0	25	100	0	102	23	21	3	50	1.65
27287751--27287793	21	2.1	20	87	12	61	79	9	11	0	0.95
27301520--27301576	4	14.2	4	78	7	62	45	0	24	29	1.53
27303566--27303647	42	2.0	42	97	0	155	36	8	13	41	1.75
27310142--27310189	16	3.0	16	81	6	53	68	4	8	18	1.31
27310666--27310746	25	3.6	22	65	26	53	37	12	2	48	1.54
27310572--27310987	143	2.9	139	83	11	508	44	9	3	42	1.52
27310886--27311085	97	2.1	97	87	6	291	43	11	3	42	1.56
27310916--27311124	97	2.2	94	83	8	253	40	13	2	43	1.59
27325415--27327722	769	3.0	769	99	0	4562	25	19	15	38	1.92
27330061--27330226	54	3.1	54	90	1	253	28	7	12	51	1.66
27330202--27330236	18	1.9	18	88	0	52	22	8	11	57	1.61
27331920--27332028	23	4.7	23	80	4	130	30	16	23	29	1.96
27333755--27333836	37	2.2	37	93	0	137	31	1	21	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27334285--27334469	28	6.7	28	79	7	173	36	8	24	31	1.85
27334289--27334454	56	3.0	54	80	10	203	36	9	24	30	1.86
27334430--27334509	40	2.0	40	87	4	117	42	7	18	31	1.78
27336465--27336525	26	2.4	25	84	13	72	3	21	0	75	0.94
27337593--27337640	25	1.9	25	86	0	69	77	6	14	2	1.06
27343163--27343643	243	2.0	241	97	0	917	37	19	11	31	1.87
27347904--27348242	170	2.0	170	94	1	590	44	16	11	28	1.81
27348226--27348256	2	15.5	2	100	0	62	51	0	48	0	1.00
27350756--27350793	3	12.7	3	94	0	67	0	31	2	65	1.06
27352064--27352157	26	3.6	26	82	1	98	21	18	30	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135