genome.fa.s2.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  106  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32578397--32578423	8	3.4	8	100	0	54	66	0	0	33	0.92
32581424--32581448	7	3.6	7	100	0	50	28	28	0	44	1.55
32582678--32582736	6	10.0	6	75	17	61	42	1	1	54	1.20
32582668--32582736	11	6.5	11	73	17	56	42	1	2	53	1.24
32583092--32583140	25	2.0	25	92	8	82	46	20	6	26	1.73
32583511--32583548	13	2.9	13	92	0	58	55	2	0	42	1.14
32583594--32583681	38	2.3	38	100	0	176	13	38	27	20	1.90
32584583--32584900	30	10.6	30	86	3	336	37	22	3	36	1.72
32584583--32584937	60	5.9	60	85	3	367	37	21	3	36	1.73
32584581--32584965	90	4.3	89	83	6	399	37	22	3	35	1.72
32584581--32584966	30	13.0	28	83	4	146	37	23	3	35	1.72
32584941--32585031	28	3.1	29	62	6	67	34	30	0	35	1.58
32584940--32585069	58	2.2	58	86	4	172	33	29	0	36	1.63
32596777--32597998	68	17.9	68	96	0	2156	34	16	20	28	1.94
32597941--32598198	92	2.8	92	98	0	489	36	17	18	26	1.94
32598447--32598501	27	2.0	27	85	0	74	40	1	5	52	1.35
32598465--32598540	6	13.0	6	74	20	72	42	2	1	53	1.23
32598465--32598538	17	4.6	16	81	11	98	40	2	1	55	1.22
32598455--32598540	11	7.5	11	71	13	57	41	2	2	53	1.26
32598465--32598539	31	2.3	32	86	8	100	41	2	1	54	1.23
32598465--32598551	17	5.4	16	72	12	52	45	2	1	50	1.21
32598896--32598944	25	2.0	25	88	8	73	46	22	6	24	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32599315--32599352	13	2.9	13	92	0	58	55	2	0	42	1.14
32599398--32599479	38	2.2	38	100	0	164	14	37	26	20	1.92
32600384--32600801	30	14.0	30	82	7	390	38	23	2	35	1.70
32600389--32600798	90	4.6	90	82	8	462	38	23	2	35	1.69
32600389--32600860	30	15.9	28	80	7	164	37	24	2	35	1.68
32600749--32600867	29	4.1	30	71	15	90	36	31	0	30	1.64
32600762--32600884	58	2.1	59	83	8	171	34	34	1	28	1.67
32600776--32600905	58	2.2	58	88	1	188	34	32	0	32	1.64
32604877--32604907	13	2.3	14	94	5	55	48	35	0	16	1.46
32604856--32604899	21	2.1	21	82	0	52	52	31	2	13	1.53
32605230--32605277	21	2.3	21	85	3	62	43	35	0	20	1.52
32605353--32605542	40	4.7	41	81	4	208	29	23	21	25	1.99
32605353--32605526	81	2.1	82	84	2	217	29	22	21	25	1.99
32605564--32605593	5	6.0	5	100	0	60	60	0	0	40	0.97
32605786--32605822	17	2.2	17	95	0	65	37	27	0	35	1.57
32606717--32606759	21	2.1	20	83	12	52	41	2	0	55	1.12
32607000--32607088	41	2.2	41	87	4	126	40	14	24	20	1.90
32607474--32607530	7	7.9	7	75	21	55	70	1	0	28	0.98
32607473--32607529	22	2.6	22	86	5	80	70	1	0	28	0.98
32607474--32607530	29	2.0	29	83	13	73	70	1	0	28	0.98
32607602--32607667	20	3.6	20	67	23	63	36	0	1	62	1.05
32607614--32607666	17	3.1	17	73	10	63	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32607916--32607953	19	2.0	20	89	5	60	34	0	7	57	1.28
32609619--32609850	127	1.8	127	83	1	313	28	23	18	29	1.98
32610331--32610383	3	17.7	3	100	0	106	33	0	0	66	0.92
32612627--32612682	27	2.1	27	86	6	78	51	1	5	41	1.35
32620143--32620189	21	2.2	21	77	7	51	65	2	4	27	1.22
32624803--32624853	19	2.7	19	75	9	50	56	5	0	37	1.23
32625291--32625317	13	2.1	13	100	0	54	37	44	7	11	1.68
32625407--32625516	58	1.9	58	92	3	186	46	16	0	37	1.47
32644993--32645127	50	2.7	51	89	3	220	32	14	23	29	1.94
32646176--32646278	22	4.6	21	75	12	73	39	2	1	55	1.26
32646189--32646246	6	10.3	6	78	9	52	34	1	1	62	1.16
32646189--32646249	17	3.7	15	76	18	59	36	1	1	60	1.16
32646187--32646260	5	13.6	5	73	16	58	39	2	1	56	1.22
32646189--32646260	11	6.5	11	78	13	60	37	2	1	58	1.21
32646303--32646372	37	1.9	37	85	8	99	40	30	14	15	1.87
32646506--32646559	28	1.9	28	81	7	65	16	44	14	24	1.85
32648210--32648307	30	3.3	30	77	7	110	30	30	3	35	1.73
32660977--32661643	59	11.3	59	88	3	934	34	5	28	31	1.80
32661015--32661584	29	19.5	29	68	11	259	34	5	28	31	1.79
32660977--32661643	117	5.7	118	89	3	950	34	5	28	31	1.80
32660977--32661643	176	3.8	176	90	1	1005	34	5	28	31	1.80
32661740--32662065	163	2.0	163	85	5	446	46	12	15	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32661786--32662137	163	2.2	160	80	7	388	48	12	15	23	1.79
32662241--32662279	12	3.4	11	82	10	51	12	10	0	76	1.01
32663652--32663718	6	11.2	6	79	17	77	50	1	1	46	1.19
32663652--32663682	11	2.7	11	95	5	53	51	0	0	48	1.00
32664006--32664875	31	25.0	37	63	21	213	29	21	16	32	1.95
32664079--32664190	39	2.9	39	86	1	154	27	21	18	32	1.97
32664156--32664879	69	10.5	69	93	1	1118	29	21	16	32	1.95
32664010--32664879	138	6.3	137	89	2	1136	29	21	16	32	1.95
32663994--32664879	207	4.3	205	88	3	1159	29	21	16	32	1.96
32664638--32664871	37	6.8	35	68	14	132	28	21	17	32	1.96
32676779--32676870	29	3.2	29	66	6	69	38	6	27	28	1.81
32676743--32677233	59	8.3	59	90	2	693	34	6	28	30	1.81
32676743--32677233	176	2.8	174	88	3	689	34	6	28	30	1.81
32676743--32677233	117	4.2	118	90	1	718	34	6	28	30	1.81
32677331--32677656	163	2.0	163	87	3	469	46	13	15	25	1.82
32677377--32677729	163	2.2	161	81	5	408	48	13	15	22	1.79
32679254--32679320	6	11.2	6	81	12	84	52	1	0	46	1.09
32679798--32681155	76	17.8	76	91	3	1969	32	17	16	33	1.92
32681429--32681507	22	3.5	22	74	8	70	37	3	2	55	1.31
32681445--32681484	17	2.4	17	86	0	53	37	2	0	60	1.11
32681440--32681508	11	6.3	11	77	14	54	39	2	1	56	1.23
32681551--32681625	37	2.0	38	87	10	111	38	33	13	14	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32681754--32681807	28	1.9	28	81	7	65	16	46	12	24	1.82
32683384--32683448	28	2.2	28	83	5	76	40	24	7	27	1.82
32683440--32683814	117	3.2	116	88	6	551	32	31	3	32	1.75
32683440--32683814	59	6.4	59	87	5	528	32	31	3	32	1.75
32683736--32683824	28	3.1	28	72	20	69	35	30	4	29	1.77
32686134--32686182	19	2.5	20	76	6	55	51	0	4	44	1.20
32687717--32687807	11	8.1	11	73	9	67	38	2	2	57	1.23
32687720--32687822	17	6.1	16	81	8	107	38	1	2	56	1.26
32687719--32687825	34	3.2	33	80	10	126	39	1	2	56	1.25
32687719--32687808	6	15.8	6	72	15	57	38	2	2	56	1.24
32687751--32687806	23	2.5	23	79	2	60	37	3	1	57	1.27
32688649--32688673	13	1.9	13	100	0	50	56	0	0	44	0.99
32689836--32690054	59	3.7	59	79	4	194	38	22	4	34	1.74
32689836--32690054	30	7.4	29	79	3	195	38	22	4	34	1.74
32689814--32690069	29	8.7	29	77	9	173	37	23	4	34	1.76
32689811--32690054	89	2.8	88	82	8	298	38	22	4	34	1.76
32690021--32690192	59	2.9	59	82	4	152	30	22	7	39	1.82
32690051--32690192	59	2.4	59	88	2	205	30	21	8	40	1.83
32690051--32690144	29	3.2	29	68	19	77	31	24	8	35	1.86
32690104--32690200	29	3.3	29	68	13	81	31	17	7	43	1.76
32690051--32690240	59	3.2	59	79	5	154	31	21	6	41	1.78
32690162--32690240	28	2.7	30	76	11	74	34	18	1	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32690225--32690316	29	3.2	29	93	4	152	34	30	7	27	1.85
32692554--32692588	18	2.0	17	88	5	52	45	0	0	54	0.99
32692893--32692959	26	2.7	23	77	20	64	17	8	1	71	1.19
32693447--32693515	29	2.4	28	82	4	75	34	8	7	49	1.61
32693463--32693523	29	2.1	29	84	0	77	37	8	4	49	1.54
32695383--32695434	2	26.0	2	100	0	104	50	0	0	50	1.00
32698747--32698925	82	2.2	81	79	10	197	43	3	6	45	1.48
32700062--32700122	29	2.1	29	84	3	79	24	9	34	31	1.88
32700108--32700238	59	2.2	59	81	6	151	41	6	20	31	1.77
32700138--32700360	58	3.8	56	77	12	141	39	6	22	31	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135