genome.fa.s2.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  4  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1147535--1147807	59	4.7	57	76	11	200	39	22	3	34	1.71
1147513--1147825	88	3.6	87	80	8	325	40	23	3	32	1.71
1151919--1151992	34	2.2	34	92	0	121	28	16	8	47	1.75
1152120--1152147	2	14.0	2	100	0	56	50	0	0	50	1.00
1154428--1154528	17	5.9	17	80	4	96	35	1	5	56	1.35
1154462--1154536	6	13.0	6	72	13	50	40	1	5	53	1.32
1156165--1156275	30	3.8	29	79	5	125	37	25	2	34	1.70
1156165--1156397	29	7.9	30	79	10	178	37	24	1	35	1.66
1156190--1156397	59	3.5	58	82	8	217	37	25	0	35	1.63
1156202--1156423	29	7.5	31	80	9	182	36	23	2	36	1.70
1156261--1156451	88	2.2	86	82	5	222	36	23	3	37	1.72
1156316--1156560	29	8.4	29	73	12	117	32	26	6	34	1.82
1156376--1156560	59	3.2	58	75	6	160	31	28	8	31	1.87
1156437--1156588	29	5.2	29	76	4	110	30	28	9	30	1.88
1156808--1157001	97	2.0	97	90	2	309	29	19	14	37	1.91
1157538--1157596	29	2.1	29	81	9	68	35	3	8	52	1.49
1167377--1167411	3	11.3	3	87	6	52	0	5	31	62	1.18
1169589--1169636	26	1.9	24	87	8	69	39	2	4	54	1.32
1171055--1171079	5	5.0	5	100	0	50	20	0	0	80	0.72
1171142--1171171	14	2.1	14	93	0	51	16	6	3	73	1.18
1171943--1171972	16	1.9	16	93	6	53	16	13	0	70	1.18
1171938--1171981	22	2.0	22	86	8	63	18	11	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1173534--1173583	21	2.4	21	89	0	73	46	14	12	28	1.79
1177589--1177614	6	4.3	6	100	0	52	15	0	0	84	0.62
1177594--1177647	12	4.8	11	78	19	58	18	1	0	79	0.82
1177606--1177645	4	9.8	4	84	15	55	20	2	0	77	0.88
1179161--1179205	19	2.4	19	81	7	56	37	0	4	57	1.19
1180005--1180034	16	1.9	16	93	6	53	16	13	0	70	1.18
1180000--1180060	22	2.8	22	87	7	72	14	11	1	72	1.20
1180014--1180060	21	2.2	22	92	3	78	14	8	2	74	1.15
1185884--1185953	28	2.5	27	78	15	72	61	2	0	35	1.11
1185905--1185970	31	2.2	30	80	15	75	60	1	0	37	1.06
1188985--1189032	25	1.9	25	87	8	71	56	2	2	39	1.23
1195582--1195617	3	12.0	3	100	0	72	33	0	0	66	0.92
1195687--1195723	7	5.3	7	93	0	56	24	29	13	32	1.93
1200006--1200063	29	2.0	30	86	3	82	44	1	6	46	1.40
1203151--1203464	48	6.7	48	75	7	153	24	41	10	23	1.86
1203269--1203365	42	2.2	42	89	5	140	32	35	15	16	1.90
1203253--1203596	48	7.5	43	74	12	197	30	36	13	19	1.90
1203376--1203461	27	3.4	26	70	18	74	22	45	5	26	1.75
1203153--1203551	186	2.1	186	91	0	627	26	38	12	22	1.90
1203436--1203596	42	3.6	44	86	7	218	33	34	16	16	1.91
1203436--1203596	45	3.6	45	85	9	204	33	34	16	16	1.91
1203571--1203671	27	4.0	26	76	15	104	25	41	6	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1203376--1203809	210	2.1	212	95	1	773	31	37	11	19	1.88
1203655--1203816	45	3.5	45	94	2	261	35	36	12	14	1.85
1203835--1204052	96	2.3	96	86	0	292	25	50	3	20	1.63
1204074--1204152	24	3.3	24	72	19	83	32	45	2	18	1.63
1204074--1204155	27	3.3	27	64	30	72	32	46	2	18	1.62
1203793--1204155	48	7.4	49	76	6	256	30	47	4	17	1.68
1205187--1205266	36	2.2	36	89	8	119	27	41	7	23	1.81
1205178--1205752	150	3.8	150	92	0	954	26	39	10	22	1.87
1205337--1205416	36	2.2	36	88	0	115	23	40	11	25	1.88
1205637--1205725	36	2.5	36	84	0	106	22	42	11	23	1.85
1205808--1207084	48	26.6	47	71	11	632	28	48	4	18	1.68
1205765--1206553	96	8.2	94	82	6	792	29	47	5	17	1.71
1205765--1206553	192	4.1	190	85	6	986	29	47	5	17	1.71
1205808--1207075	240	5.3	239	79	7	1178	28	48	4	18	1.68
1206252--1206335	21	3.7	21	70	22	62	25	57	3	14	1.53
1205850--1207112	96	13.2	96	79	6	805	28	48	4	18	1.67
1205901--1207112	192	6.3	192	79	6	939	28	48	4	19	1.67
1205808--1207112	144	9.1	141	74	6	870	28	48	4	18	1.68
1207037--1207120	27	3.3	27	69	19	72	25	53	0	21	1.46
1210311--1210365	27	2.0	27	82	6	67	54	1	3	40	1.28
1210722--1210752	15	2.1	15	93	0	53	19	0	22	58	1.40
1219473--1219614	55	2.5	55	78	11	144	25	10	14	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1219522--1219639	60	2.0	59	85	5	157	21	14	12	51	1.75
1219856--1219918	30	2.3	26	73	19	63	57	9	11	22	1.62
1226455--1226480	3	8.7	3	100	0	52	0	65	0	34	0.93
1227944--1228006	33	1.9	33	83	0	81	34	30	17	17	1.93
1227942--1228024	33	2.5	32	76	5	76	31	30	20	18	1.96
1240169--1240222	28	1.9	28	84	0	72	57	3	9	29	1.47
1247754--1247817	33	1.9	33	84	6	85	40	7	18	32	1.80
1248475--1248519	21	2.1	21	87	0	63	0	31	22	46	1.52
1250445--1250493	10	4.7	10	80	9	53	59	2	0	38	1.09
1250446--1250558	22	5.3	22	75	10	101	53	2	0	42	1.20
1250496--1250675	76	2.4	74	87	5	256	49	3	2	44	1.33
1250456--1250558	40	2.5	42	87	6	138	52	2	0	43	1.22
1250646--1250694	10	5.3	10	76	18	61	55	0	0	44	0.99
1250647--1250694	18	2.7	18	93	0	78	56	0	0	43	0.99
1255308--1255338	12	2.6	12	94	0	53	29	9	25	35	1.88
1263830--1263885	27	2.0	29	82	10	71	44	1	1	51	1.22
1265021--1265067	22	2.1	22	88	4	67	14	6	10	68	1.38
1265380--1265479	33	3.0	33	100	0	200	60	12	3	25	1.46
1276293--1276320	14	2.0	14	100	0	56	42	14	21	21	1.88
1277476--1277523	19	2.5	19	100	0	96	52	0	0	47	1.00
1277464--1277522	19	2.7	23	73	26	65	52	0	0	47	1.00
1278804--1278862	28	2.1	28	96	0	109	40	11	22	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1278846--1279644	399	2.0	399	94	0	1400	34	13	24	27	1.93
1284796--1284836	21	1.9	22	90	5	66	9	2	17	70	1.25
1300636--1300776	58	2.4	58	87	9	205	39	11	17	31	1.85
1301999--1302059	22	2.8	22	74	18	63	45	1	0	52	1.10
1305680--1305749	25	2.8	25	97	0	131	30	31	4	34	1.77
1310034--1310097	25	2.6	25	97	0	119	31	31	3	34	1.73
1317697--1317862	79	2.1	79	87	0	233	37	19	25	16	1.93
1321930--1321954	6	4.2	6	100	0	50	36	16	48	0	1.46
1329127--1329163	6	6.2	6	100	0	74	35	16	48	0	1.46
1343660--1343684	13	1.9	13	100	0	50	32	8	0	60	1.26
1353907--1353963	27	2.1	27	96	0	105	22	29	15	31	1.95
1355429--1355466	6	6.3	6	100	0	76	63	0	0	36	0.95
1368841--1368917	29	2.6	31	76	14	72	42	2	1	53	1.23
1368877--1368919	15	2.9	15	85	0	59	41	4	0	53	1.21
1368921--1368963	22	1.9	23	86	13	63	25	4	4	65	1.32
1374913--1374944	6	5.3	6	100	0	64	31	53	15	0	1.43
1376134--1376173	21	1.9	21	84	0	53	32	2	0	65	1.06
1379728--1379760	13	2.4	14	85	10	50	18	6	3	72	1.18
1380691--1381010	137	2.3	135	86	6	437	50	5	5	39	1.47
1383222--1383248	13	2.1	13	100	0	54	85	0	14	0	0.61
1391675--1391705	16	1.9	16	93	0	53	54	29	0	16	1.42
1393799--1393839	21	2.0	21	90	0	64	51	12	24	12	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1398239--1398314	25	3.2	24	88	5	102	65	6	9	18	1.42
1412257--1412367	57	1.9	57	100	0	222	32	10	6	50	1.62
1421967--1421998	2	16.0	2	100	0	64	50	0	0	50	1.00
1422237--1422307	22	3.3	21	75	14	65	9	8	11	70	1.34
1422297--1422344	11	4.4	11	72	0	51	22	6	6	64	1.39
1423694--1423732	19	2.0	20	85	5	53	41	10	0	48	1.37
1427433--1427465	15	2.2	15	89	10	50	45	0	0	54	0.99
1427542--1427576	17	2.1	16	89	5	52	57	0	2	40	1.14
1435980--1436023	3	14.7	3	100	0	88	0	31	0	68	0.90
1441899--1442050	80	1.9	80	85	5	209	32	24	19	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135