genome.fa.s2.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  56  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15913123--15913165	21	2.0	21	86	0	59	23	18	25	32	1.97
15917951--15918218	50	5.3	50	70	12	188	34	17	21	26	1.95
15917943--15918219	101	2.7	101	83	3	369	33	17	20	27	1.95
15917943--15918298	101	3.5	101	79	5	362	34	17	19	27	1.95
15920111--15920175	24	2.8	24	86	4	98	24	3	7	64	1.34
15920365--15920433	4	16.8	4	74	16	61	24	2	4	68	1.22
15921161--15921208	23	2.1	23	81	11	55	18	4	12	64	1.43
15933819--15933843	8	3.1	8	100	0	50	48	0	40	12	1.40
15935096--15935156	21	2.9	21	75	2	68	26	19	22	31	1.98
15935798--15935837	19	2.2	18	86	4	53	75	2	15	7	1.14
15936424--15936480	26	2.1	28	84	12	75	8	19	5	66	1.38
15944170--15944195	13	2.0	13	100	0	52	15	7	7	69	1.35
15954423--15954463	20	2.0	20	86	9	57	58	0	41	0	0.98
15954826--15954858	12	2.6	13	95	4	59	15	0	12	72	1.12
15954895--15954963	17	4.0	17	82	1	84	18	20	11	49	1.78
15956100--15956317	107	2.0	107	99	0	427	32	22	21	23	1.98
15964648--15964673	12	2.2	12	100	0	52	42	7	19	30	1.79
15973862--15973914	27	1.9	28	88	3	81	16	20	18	43	1.88
15974603--15974659	30	1.9	30	85	0	78	15	12	26	45	1.82
15976911--15977075	29	5.7	29	83	0	195	43	24	11	21	1.85
15981867--15981906	18	2.2	18	86	0	53	37	10	17	35	1.83
15986101--15986140	16	2.5	16	83	0	53	42	0	2	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15988854--15988878	1	25.0	1	100	0	50	0	0	0	100	0.00
15992095--15992158	28	2.3	28	86	0	83	32	18	25	23	1.97
16001345--16001394	24	2.1	23	79	17	57	36	2	2	60	1.20
16003608--16003915	154	2.0	155	89	1	476	42	15	15	26	1.87
16038071--16038129	24	2.5	25	83	8	70	28	16	0	54	1.43
16039800--16039884	42	2.0	42	83	0	107	29	27	15	28	1.96
16043902--16043958	22	2.6	22	88	0	87	31	14	14	40	1.85
16048696--16048731	13	2.8	13	91	4	56	55	5	2	36	1.38
16051319--16051544	53	4.3	53	90	0	371	34	22	15	28	1.94
16054860--16054904	18	2.4	20	82	14	60	77	2	6	13	1.05
16066807--16066955	80	1.9	79	92	1	253	28	14	23	34	1.93
16066807--16066962	79	2.0	79	91	2	251	28	14	22	34	1.94
16066917--16067073	80	2.0	78	91	2	251	29	15	16	37	1.90
16067477--16067621	48	3.0	46	77	13	141	49	13	11	25	1.75
16067492--16067623	48	2.8	48	84	0	174	51	13	10	24	1.72
16073780--16073818	10	4.0	10	96	3	71	30	28	0	41	1.57
16074277--16074301	12	2.1	12	100	0	50	36	8	16	40	1.77
16077212--16077265	7	7.7	7	100	0	108	87	0	0	12	0.56
16082587--16082787	108	1.9	109	86	1	287	30	13	16	39	1.88
16087429--16087575	74	2.0	75	89	1	224	47	9	11	31	1.72
16101910--16102025	36	3.2	36	82	0	133	26	16	25	31	1.96
16104376--16104556	72	2.5	72	80	3	186	24	17	29	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16107099--16107147	21	2.3	21	86	6	64	28	26	14	30	1.95
16116549--16116573	3	8.3	3	100	0	50	32	0	0	68	0.90
16118105--16118130	12	2.2	12	100	0	52	34	7	15	42	1.75
16127959--16127993	18	2.0	17	88	5	52	51	5	37	5	1.50
16127986--16128014	8	3.8	8	95	4	51	62	0	37	0	0.96
16140655--16140694	18	2.3	18	86	4	55	20	17	10	52	1.72
16143292--16143351	26	2.4	24	84	15	77	31	1	3	63	1.20
16147041--16147066	12	2.2	12	100	0	52	34	7	15	42	1.75
16152437--16152484	16	2.8	17	84	6	62	2	20	2	75	1.02
16161427--16161456	14	2.2	14	94	5	53	36	10	23	30	1.87
16164715--16164894	100	1.8	99	84	3	245	36	18	17	27	1.94
16164850--16165120	99	2.7	99	90	1	409	36	20	19	23	1.95
16164710--16165206	99	5.0	98	77	8	321	35	20	19	25	1.96
16165209--16165990	46	17.0	46	86	0	990	35	25	14	24	1.93
16165953--16166101	50	3.0	50	75	9	135	39	17	17	25	1.91
16167737--16167787	15	3.4	14	76	21	50	17	3	1	76	1.03
16167738--16167806	24	2.7	26	76	13	72	14	7	1	76	1.06
16193942--16193975	17	2.0	17	88	0	50	20	8	14	55	1.65
16194677--16195280	23	26.3	23	86	0	762	35	4	12	46	1.64
16200117--16200175	10	6.0	10	71	16	52	5	20	0	74	1.00
16200756--16200794	18	2.1	19	86	13	55	61	10	12	15	1.56
16206884--16206918	17	2.0	18	88	5	54	37	20	22	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16210164--16210242	18	3.6	22	74	22	76	69	3	3	22	1.21
16210133--16210215	19	4.4	19	74	16	75	72	4	1	21	1.10
16210272--16210335	30	2.1	30	85	5	85	64	7	9	18	1.47
16210471--16210535	30	2.1	31	83	13	82	61	4	10	23	1.47
16211602--16211642	19	2.0	20	86	9	57	17	0	26	56	1.41
16211631--16211672	21	2.0	21	90	0	66	26	7	14	52	1.67
16212196--16212719	100	5.2	100	86	1	665	23	20	20	35	1.96
16213306--16213350	21	2.1	21	87	0	63	51	6	17	24	1.70
16218958--16219034	21	3.5	22	73	16	61	44	24	7	23	1.80
16221742--16221785	23	2.0	23	90	4	72	25	9	11	54	1.65
16226540--16226596	17	3.4	17	78	7	62	22	17	12	47	1.81
16226532--16226597	34	1.9	34	84	6	89	21	19	12	46	1.82
16231481--16231570	24	3.8	24	95	0	153	25	24	22	27	2.00
16241968--16242386	207	2.0	206	95	1	759	27	18	12	41	1.87
16246352--16246392	11	4.0	10	87	12	57	78	2	2	17	0.98
16246352--16246392	5	8.0	5	87	12	57	78	2	2	17	0.98
16246352--16246393	16	2.7	16	89	10	61	76	4	2	16	1.07
16247237--16247301	34	1.9	32	82	14	78	13	3	24	58	1.50
16247277--16247318	21	2.0	21	90	0	66	26	7	14	52	1.67
16253713--16253742	15	2.0	15	93	0	51	43	6	0	50	1.28
16254025--16254061	17	2.2	17	95	0	65	40	2	0	56	1.13
16257213--16257248	13	2.7	13	91	4	54	61	11	2	25	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16267699--16267776	42	1.9	42	84	5	106	28	6	23	42	1.78
16269629--16269680	18	2.9	17	80	5	59	34	19	19	26	1.95
16272263--16272306	13	3.2	13	84	9	61	54	15	2	27	1.53
16273072--16273142	30	2.4	30	85	0	88	30	25	19	23	1.98
16273351--16273389	6	6.7	6	94	5	71	35	0	64	0	0.94
16279306--16279420	59	1.9	60	82	1	142	25	12	9	53	1.68
16279598--16279667	33	2.1	33	81	7	79	52	4	14	28	1.60
16279607--16279679	33	2.1	34	82	5	85	57	5	9	27	1.52
16280993--16281076	43	2.0	43	88	4	125	32	22	14	30	1.94
16283972--16284067	3	32.0	3	82	0	93	57	31	9	2	1.42
16283972--16284065	9	10.4	9	85	0	107	57	30	9	2	1.43
16285345--16285472	66	1.9	66	100	0	256	39	13	7	39	1.73
16285824--16285858	11	3.2	11	91	0	52	74	0	0	25	0.82
16288214--16288277	26	2.5	25	80	10	67	64	9	10	15	1.50
16291263--16291312	24	2.1	24	82	10	59	58	18	6	18	1.59
16305301--16305345	23	1.9	24	86	13	67	46	0	46	6	1.29
16329635--16329680	16	2.6	18	80	10	51	52	0	2	45	1.13
16329635--16329672	18	2.1	19	85	5	51	55	0	2	42	1.14
16338155--16338193	18	2.3	16	86	8	51	33	2	5	58	1.33
16346703--16346727	12	2.1	12	100	0	50	76	8	0	16	1.02
16357210--16357266	22	2.6	23	86	5	75	24	40	14	21	1.90
16357573--16357677	23	4.6	23	81	3	113	41	19	10	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16357768--16357838	12	6.0	12	75	8	65	46	15	14	23	1.82
16357778--16357836	24	2.5	24	85	0	73	45	15	15	23	1.84
16358716--16358982	79	3.4	81	77	7	242	33	24	18	23	1.97
16361181--16361215	18	1.9	18	88	0	52	20	5	22	51	1.68
16369450--16369515	28	2.4	28	73	12	64	18	16	19	45	1.86
16372302--16372528	80	2.8	79	85	2	276	23	18	28	29	1.98
16377154--16377365	61	3.5	61	88	1	293	32	14	20	33	1.93
16387974--16388008	10	3.4	10	84	7	52	54	0	0	45	0.99
16395566--16395677	7	15.7	7	86	6	127	83	0	15	1	0.74
16395573--16395655	25	3.2	26	79	17	93	85	0	13	1	0.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135