genome.fa.s2.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  118  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35410743--35410779	16	2.3	16	90	0	56	64	2	5	27	1.28
35415012--35415036	12	2.1	12	100	0	50	92	0	0	8	0.40
35415798--35415839	23	1.9	23	85	9	61	45	4	2	47	1.36
35423327--35423376	15	3.1	15	76	15	55	42	0	0	58	0.98
35430476--35430553	41	1.9	39	85	10	104	48	6	1	43	1.36
35432829--35432884	23	2.3	24	93	6	96	50	3	7	39	1.47
35446294--35446346	16	3.3	15	80	15	52	64	1	1	32	1.15
35446460--35446485	9	2.9	9	100	0	52	92	7	0	0	0.39
35454733--35454796	24	2.7	24	87	4	85	34	4	9	51	1.55
35459231--35459301	30	2.3	30	82	2	88	49	0	0	50	1.00
35462608--35463008	201	2.0	201	84	2	527	23	19	13	42	1.87
35466669--35466713	24	1.9	24	86	4	65	40	2	0	57	1.11
35477059--35477135	38	2.0	38	92	0	127	35	6	16	41	1.75
35477638--35477700	20	3.1	19	76	21	56	49	0	1	49	1.10
35479449--35479490	20	2.1	19	86	8	57	40	0	9	50	1.35
35479582--35479786	110	1.9	110	90	0	329	40	8	15	35	1.77
35482375--35482421	18	2.6	19	76	6	53	29	2	4	63	1.25
35482682--35482856	91	1.9	90	83	5	228	24	14	12	48	1.78
35483034--35483097	33	1.9	33	84	9	85	53	9	12	25	1.68
35490307--35490377	33	2.2	33	100	0	142	36	2	5	54	1.38
35495184--35495229	17	2.8	17	77	6	51	39	0	2	58	1.10
35512446--35512495	26	2.0	25	84	11	66	52	0	2	46	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35513054--35513138	43	2.0	43	100	0	170	23	11	37	27	1.90
35517047--35517105	22	2.6	23	75	5	66	61	5	1	32	1.28
35517310--35517355	23	2.0	23	87	8	67	71	0	0	28	0.86
35520760--35520819	26	2.2	27	85	5	77	18	25	18	38	1.93
35520812--35520863	22	2.4	22	90	0	77	11	26	19	42	1.85
35524508--35524538	4	7.8	4	92	0	53	48	22	3	25	1.66
35524536--35524617	4	20.5	4	82	0	56	36	1	13	48	1.50
35524555--35524622	10	6.8	10	84	0	82	32	0	17	50	1.47
35524542--35524622	14	5.9	14	85	5	94	34	0	16	49	1.46
35524543--35524615	20	4.0	20	79	16	86	34	0	15	50	1.44
35530878--35530931	27	2.0	27	92	0	90	42	16	1	38	1.59
35533914--35533942	2	14.5	2	100	0	58	51	0	0	48	1.00
35536177--35536211	2	17.5	2	100	0	70	51	0	48	0	1.00
35540458--35540529	21	3.4	21	84	7	92	11	6	13	68	1.39
35540593--35540639	21	2.2	22	81	11	53	10	0	19	70	1.16
35546134--35546577	191	2.3	194	83	2	527	29	19	25	25	1.98
35547283--35547331	20	2.4	21	82	3	55	30	14	24	30	1.94
35547333--35547406	38	1.9	38	91	0	121	22	14	21	40	1.90
35550222--35550309	28	2.9	31	78	14	87	53	1	0	45	1.07
35550222--35550310	30	3.0	30	73	22	89	52	1	0	46	1.07
35550265--35550322	28	2.0	30	86	6	84	53	0	0	46	1.00
35553670--35553741	31	2.3	31	83	9	85	37	2	6	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35557806--35558020	43	5.0	42	83	5	252	26	25	16	30	1.97
35558093--35558125	15	2.2	15	94	0	57	48	21	0	30	1.50
35558095--35558139	15	2.7	16	83	16	56	46	22	0	31	1.52
35564437--35564484	24	2.0	24	100	0	96	45	8	12	33	1.72
35566216--35566302	42	2.0	42	82	2	102	18	31	13	36	1.90
35566231--35566393	42	3.9	42	82	2	186	15	30	15	38	1.89
35567707--35567851	41	3.5	40	73	7	112	17	23	15	43	1.87
35567665--35567850	83	2.2	84	84	2	232	19	23	17	40	1.91
35568310--35568350	2	20.5	2	100	0	82	48	0	0	51	1.00
35570874--35570942	31	2.2	31	84	0	84	39	8	14	37	1.77
35573577--35575098	506	3.0	506	98	0	2904	37	14	10	37	1.81
35578321--35578460	52	2.7	52	93	0	226	25	15	25	33	1.95
35584581--35584624	3	14.3	3	95	4	79	63	0	34	2	1.07
35585048--35585077	5	5.8	5	96	4	51	80	0	20	0	0.72
35586494--35586533	3	13.7	3	94	5	73	65	0	0	35	0.93
35587834--35587867	17	2.1	17	88	5	52	50	5	0	44	1.26
35589519--35589853	166	2.0	163	89	1	508	40	14	18	27	1.89
35591006--35591031	12	2.2	12	100	0	52	69	7	0	23	1.14
35591133--35591201	23	3.0	24	78	6	79	53	8	15	21	1.69
35593192--35593269	32	2.5	32	79	6	88	42	5	14	38	1.67
35602086--35602121	18	2.1	17	89	5	54	33	19	0	47	1.50
35604547--35604585	20	1.9	21	94	5	71	20	15	7	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35608294--35608321	2	14.0	2	100	0	56	50	0	0	50	1.00
35622149--35622192	19	2.3	20	81	14	58	34	2	2	61	1.21
35622617--35622660	21	2.1	21	91	4	72	70	2	2	25	1.10
35630328--35630405	23	3.5	22	75	12	79	28	3	2	65	1.23
35630344--35630413	23	3.2	23	69	13	58	28	4	2	64	1.27
35641286--35641405	58	2.1	58	88	3	179	46	20	0	33	1.51
35641629--35641666	18	2.0	20	85	10	53	10	0	13	76	1.02
35642708--35642749	5	8.4	5	100	0	84	38	0	61	0	0.96
35645366--35645719	59	6.0	59	88	6	508	32	2	32	32	1.72
35645366--35645715	176	2.0	176	89	6	541	32	2	32	33	1.72
35646730--35646770	12	3.3	13	80	10	50	39	0	0	60	0.96
35646732--35646769	19	2.0	19	90	10	60	42	0	0	57	0.98
35649257--35649310	21	2.6	21	93	0	90	38	31	18	11	1.86
35650239--35650281	19	2.3	19	83	0	50	46	6	2	44	1.43
35660935--35660992	18	3.2	17	83	11	71	72	0	25	1	0.94
35660935--35660993	10	5.8	10	77	15	50	72	0	25	1	0.93
35661442--35661487	17	2.6	17	75	24	51	15	4	6	73	1.19
35661493--35661546	23	2.3	23	75	12	65	7	22	20	50	1.73
35664698--35664740	18	2.4	18	80	7	52	51	0	2	46	1.13
35667441--35667702	140	1.8	143	79	4	305	29	12	6	51	1.66
35668592--35668636	21	2.1	22	87	4	65	77	4	6	11	1.09
35670556--35670604	22	2.2	22	82	7	64	63	2	2	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35675050--35675117	31	2.2	31	82	10	77	27	8	17	45	1.78
35675065--35675123	31	2.0	31	86	6	86	27	11	13	47	1.78
35678116--35678172	19	2.9	20	80	10	64	38	0	0	61	0.96
35678117--35678163	21	2.3	20	85	3	67	38	0	0	61	0.96
35678870--35678948	39	2.0	40	82	5	97	27	0	7	64	1.20
35683089--35683120	14	2.4	14	90	10	50	0	9	15	75	1.05
35696156--35696240	43	2.0	43	97	0	161	37	12	16	32	1.87
35704168--35704210	23	1.9	22	85	4	59	65	0	2	32	1.06
35706648--35706699	23	2.3	23	80	9	61	46	3	1	48	1.31
35706660--35706724	31	2.1	31	85	5	87	44	4	0	50	1.22
35707867--35707906	19	2.1	19	86	9	55	40	7	10	42	1.67
35713300--35713349	25	2.0	25	84	7	66	58	10	0	32	1.31
35717992--35718050	18	3.1	18	81	13	73	50	6	40	1	1.39
35718529--35718562	18	1.9	17	88	5	50	58	14	23	2	1.50
35719228--35719263	15	2.4	15	95	0	63	36	19	2	41	1.66
35721948--35722004	27	2.1	28	80	9	64	42	21	0	36	1.53
35730633--35730731	13	7.8	12	72	19	53	46	9	5	39	1.58
35736454--35736500	23	2.0	24	87	4	69	44	2	2	51	1.25
35739850--35739901	19	2.8	19	80	5	54	53	1	0	44	1.11
35751879--35751925	11	4.3	11	78	7	51	38	0	14	46	1.45
35759713--35759766	19	2.8	20	83	8	58	35	1	1	61	1.18
35764471--35764533	28	2.4	27	82	12	69	17	12	11	58	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35766050--35766117	22	3.1	22	75	8	77	36	1	0	61	1.05
35766053--35766125	22	3.2	23	73	21	64	41	1	0	57	1.07
35767960--35768008	26	1.9	25	84	12	64	48	2	0	48	1.12
35770489--35770578	10	9.5	10	74	12	66	65	1	3	30	1.16
35770489--35770556	19	3.6	19	82	5	68	64	1	2	30	1.17
35770493--35770583	28	3.4	28	77	10	75	64	1	3	30	1.16
35770506--35770581	19	4.2	17	76	14	64	67	1	2	28	1.12
35770885--35770937	27	1.9	28	88	3	81	39	0	0	60	0.97
35770888--35770960	39	1.9	39	83	10	98	39	1	0	58	1.06
35770899--35770960	20	3.2	19	77	13	63	38	1	0	59	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135