genome.fa.s2.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  26  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6764123--6764358	42	5.8	42	81	4	214	28	16	28	26	1.97
6764345--6764446	42	2.4	42	86	6	134	31	14	21	32	1.94
6764486--6764918	49	8.8	49	74	8	200	18	30	16	35	1.92
6764507--6764779	98	2.8	98	78	2	251	19	29	15	35	1.93
6764688--6764873	50	3.8	50	76	12	181	18	33	15	32	1.92
6764631--6764915	50	5.8	49	74	10	172	17	32	15	34	1.92
6765811--6765852	17	2.6	16	82	10	50	0	21	2	76	0.90
6765811--6765900	8	11.2	8	74	11	60	3	14	2	80	0.95
6765843--6765900	12	4.9	11	81	10	62	5	8	1	84	0.83
6765824--6765900	36	2.1	36	81	13	88	3	11	2	81	0.92
6765843--6765888	21	2.2	21	84	7	58	2	10	2	84	0.79
6765843--6765904	33	1.9	32	90	9	99	4	11	1	82	0.89
6768519--6768628	29	3.7	29	79	15	100	34	3	26	35	1.74
6768572--6768742	90	1.9	90	82	3	218	40	1	22	35	1.64
6768572--6768778	30	6.9	30	81	3	184	41	1	21	34	1.65
6768572--6768778	90	2.3	89	80	4	216	41	1	21	34	1.65
6769720--6769748	8	3.6	8	100	0	58	0	13	0	86	0.58
6770780--6770946	85	2.0	85	83	4	212	25	24	12	37	1.91
6770997--6771119	48	2.6	48	82	1	149	23	21	17	37	1.94
6770874--6771237	170	2.1	169	84	4	475	24	18	15	40	1.90
6771305--6771440	37	3.6	37	94	2	218	24	19	32	24	1.97
6771475--6771617	46	3.3	42	79	11	137	31	17	21	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6771680--6771872	50	3.9	48	82	7	165	17	30	18	34	1.94
6771619--6771889	49	5.5	50	81	4	221	16	30	18	33	1.93
6772928--6772986	6	9.8	6	72	20	52	5	15	0	79	0.89
6772930--6773005	13	6.3	11	77	11	62	7	11	0	80	0.91
6772932--6772995	26	2.5	26	80	16	71	6	14	0	79	0.91
6772942--6773009	34	2.0	34	83	13	86	8	13	0	77	0.98
6776901--6776969	6	12.0	6	72	20	58	42	1	4	52	1.30
6776903--6776969	17	3.9	17	86	0	98	40	1	4	53	1.30
6778606--6778806	30	6.9	29	77	11	178	36	24	1	37	1.65
6778654--6778806	57	2.6	56	82	10	175	38	26	1	33	1.65
6778936--6778974	15	2.8	14	81	11	53	17	12	5	64	1.46
6789616--6789720	41	2.5	43	81	6	108	40	20	24	13	1.89
6790617--6790937	39	8.3	39	73	8	208	24	30	20	25	1.99
6790622--6790937	78	4.1	78	79	3	289	24	30	19	25	1.98
6791436--6791526	6	16.0	6	75	19	88	42	0	3	53	1.17
6791438--6791526	11	7.9	11	76	14	58	41	0	3	55	1.17
6791444--6791510	17	3.9	17	88	0	98	40	0	4	55	1.20
6791443--6791526	34	2.5	33	83	11	100	41	0	3	54	1.17
6791437--6791526	40	2.3	39	87	11	130	42	0	3	54	1.17
6792132--6792181	22	2.3	22	83	13	68	68	0	0	32	0.90
6792136--6792180	18	2.5	19	82	7	58	68	0	0	31	0.89
6793191--6793355	30	5.7	29	86	2	172	35	23	1	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6793260--6793337	28	2.8	28	98	0	147	33	24	2	39	1.69
6793200--6793373	58	3.0	57	76	7	165	35	22	2	40	1.67
6796005--6796170	29	5.6	29	81	7	190	36	4	25	33	1.76
6796005--6796171	60	2.8	60	84	5	214	37	4	25	32	1.75
6796208--6796309	20	4.9	21	71	17	70	53	3	1	40	1.30
6796727--6796785	28	2.1	27	82	14	68	49	3	0	47	1.18
6800103--6800158	27	2.1	27	100	0	112	19	14	37	28	1.91
6800533--6800568	14	2.6	14	90	0	54	50	0	0	50	1.00
6802488--6802513	12	2.2	12	100	0	52	38	0	0	61	0.96
6810361--6810595	114	2.1	115	98	0	454	42	25	12	19	1.86
6813648--6813692	23	2.0	23	86	8	65	37	11	15	35	1.83
6815300--6815356	24	2.4	24	87	0	78	36	5	10	47	1.61
6821984--6822055	31	2.4	30	81	4	90	41	12	11	34	1.78
6828697--6828756	29	2.1	29	81	6	68	31	8	10	50	1.66
6829742--6829777	14	2.5	15	91	8	58	25	0	0	75	0.81
6849921--6850426	60	8.4	59	78	7	434	28	19	16	34	1.94
6850077--6850419	183	1.9	184	83	4	451	29	18	15	36	1.92
6851239--6851298	30	2.0	30	86	0	84	65	3	6	25	1.33
6851280--6851351	30	2.4	31	84	11	87	61	5	5	27	1.41
6853571--6853607	17	2.2	17	95	0	65	37	2	0	59	1.12
6855073--6855411	162	2.1	162	94	0	588	26	15	12	45	1.82
6855484--6855701	29	7.5	28	73	19	151	33	27	2	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6855484--6855791	59	5.2	59	83	7	358	32	27	3	37	1.73
6857212--6857735	83	6.3	83	93	1	847	52	4	5	38	1.44
6857501--6857650	45	3.5	45	69	21	133	55	4	3	36	1.37
6857865--6857912	12	3.7	12	77	20	51	41	10	0	47	1.37
6857875--6857909	17	2.1	16	89	5	52	48	8	0	42	1.33
6857865--6857922	28	2.1	28	83	0	71	43	12	0	44	1.41
6860721--6860745	2	12.5	2	100	0	50	48	0	0	52	1.00
6861577--6861767	61	3.2	61	80	8	239	31	17	22	27	1.97
6862767--6862802	15	2.4	15	90	0	54	36	11	0	52	1.37
6863010--6863056	22	2.1	22	92	0	76	51	8	6	34	1.58
6864233--6864360	62	2.1	62	100	0	256	42	5	15	36	1.70
6865080--6865140	29	2.1	29	84	3	79	26	9	31	32	1.89
6865126--6865407	29	9.7	27	69	20	103	37	2	27	32	1.70
6865096--6865438	59	5.8	59	79	8	283	36	3	27	32	1.73
6865221--6865317	30	3.3	29	72	17	92	34	4	29	31	1.77
6865296--6865441	30	5.0	29	78	19	96	36	0	26	36	1.62
6865323--6865522	30	6.7	30	83	5	219	37	2	22	38	1.66
6867339--6867371	17	1.9	17	93	0	57	63	9	0	27	1.24
6874257--6874291	18	1.9	18	88	0	52	31	8	5	54	1.54
6876667--6876741	32	2.4	32	93	2	125	24	17	13	45	1.84
6876982--6877048	32	2.1	33	83	8	84	52	4	11	31	1.58
6878009--6878052	19	2.3	19	92	7	72	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6878009--6878052	10	4.7	9	80	8	52	59	0	0	40	0.98
6878556--6878627	19	3.8	19	78	5	65	27	6	1	63	1.28
6878584--6878679	42	2.3	41	80	18	110	27	4	2	66	1.21
6878682--6878757	30	2.6	30	80	18	88	30	2	2	64	1.21
6878682--6878755	29	2.5	29	76	24	75	29	2	2	64	1.21
6880200--6880310	28	3.9	28	76	13	84	32	2	27	37	1.71
6880206--6880339	29	4.6	29	81	6	121	34	2	26	36	1.72
6888477--6888518	21	2.0	20	86	9	57	76	4	0	19	0.96
6888477--6888518	20	2.0	21	86	13	61	76	4	0	19	0.96
6901443--6901480	19	2.0	20	89	5	60	65	2	0	31	1.06
6901628--6901662	1	35.0	1	100	0	70	0	0	0	100	0.00
6916426--6916464	19	2.1	19	85	9	53	46	0	0	53	1.00
6924971--6925101	67	2.0	67	82	10	164	54	2	6	37	1.38
6925593--6925619	6	4.5	6	100	0	54	0	85	0	14	0.61
6926793--6926825	2	17.0	2	90	6	50	45	3	0	51	1.16
6927152--6927233	30	2.7	30	94	0	137	28	54	1	15	1.49
6927152--6927248	30	3.3	29	85	7	108	26	57	2	13	1.47
6939225--6939271	16	3.0	16	79	11	53	53	0	0	46	1.00
6939246--6939276	16	1.9	16	93	0	53	61	0	0	38	0.96
6940316--6940352	4	9.5	4	94	5	67	54	0	0	45	1.00
6940909--6940949	20	2.0	21	85	4	57	29	2	0	68	1.03
6941101--6941134	17	1.9	18	88	5	52	44	2	17	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6946355--6946387	2	16.5	2	100	0	66	51	0	0	48	1.00
6946638--6946691	24	2.3	23	81	9	56	29	5	0	64	1.16
6947244--6947282	15	2.5	15	87	4	51	46	0	10	43	1.37
6947768--6947840	27	2.7	26	77	16	76	58	0	4	36	1.17
6947820--6947893	25	2.8	27	82	14	91	59	0	1	39	1.06
6948177--6948228	27	1.9	27	84	7	70	69	3	0	26	1.06
6949389--6949606	107	2.0	107	90	0	346	30	10	7	51	1.64
6961882--6961909	2	14.0	2	100	0	56	50	0	0	50	1.00
6962375--6962414	22	1.9	20	85	10	53	35	5	20	40	1.74
6978666--6978811	58	2.5	58	82	11	183	46	2	1	50	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135