genome.fa.s2.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  54  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14931757--14931787	16	1.9	16	93	0	53	61	0	16	22	1.34
14932574--14932628	26	2.1	26	93	0	92	30	21	20	27	1.98
14932662--14932752	37	2.5	37	83	0	110	25	16	26	31	1.96
14939153--14939221	21	3.3	21	69	15	70	50	17	4	27	1.64
14939136--14939221	42	2.0	42	97	0	163	53	17	4	24	1.62
14940639--14940677	19	2.2	17	86	9	51	0	41	2	56	1.13
14960053--14960079	13	2.1	13	100	0	54	55	0	0	44	0.99
14979551--14979911	123	2.9	122	89	4	537	38	9	8	43	1.67
14983755--14983873	57	2.1	57	84	7	152	27	18	9	44	1.80
14987287--14987353	20	3.4	19	85	8	89	31	4	11	52	1.58
14992749--14992792	21	2.2	20	84	12	54	56	0	27	15	1.40
14995504--14995556	21	2.5	22	84	6	74	26	1	26	45	1.64
14996604--14996689	37	2.3	38	83	2	111	41	6	17	33	1.76
15004035--15004250	108	2.0	108	97	0	405	27	27	19	25	1.99
15014201--15014295	45	2.1	45	86	0	127	28	17	24	29	1.97
15016908--15016951	23	2.0	22	86	4	61	45	15	0	38	1.47
15027887--15027930	23	2.0	22	90	4	70	50	13	0	36	1.42
15030554--15030596	22	2.0	22	90	0	68	32	25	11	30	1.91
15033795--15033819	13	1.9	13	100	0	50	24	16	12	48	1.79
15033816--15033855	21	1.9	21	85	10	55	27	17	15	40	1.89
15049429--15049469	21	2.0	21	85	0	55	29	2	24	43	1.67
15054327--15054483	50	3.1	50	75	9	138	35	14	11	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15078220--15078265	18	2.5	19	89	10	78	13	34	4	47	1.62
15080611--15080652	21	2.0	22	85	4	59	11	21	4	61	1.48
15085806--15085861	27	2.1	27	86	6	78	19	19	21	39	1.93
15085846--15085898	20	2.7	20	84	0	70	20	24	16	37	1.93
15085866--15085923	27	2.1	27	81	6	64	18	20	20	39	1.92
15086988--15087035	3	16.3	3	91	4	80	31	2	0	66	1.03
15092998--15093063	22	3.0	22	90	0	96	21	25	24	28	1.99
15093000--15093063	11	5.8	11	83	5	76	20	26	25	28	1.99
15093081--15093127	13	3.8	13	75	11	53	17	21	23	38	1.93
15119166--15119222	21	2.7	21	94	0	96	31	26	8	33	1.87
15119876--15120024	42	3.5	42	87	1	192	25	24	11	38	1.89
15129774--15129813	17	2.4	17	91	4	64	55	10	12	22	1.67
15171856--15171896	18	2.2	19	95	4	75	14	9	2	73	1.19
15174380--15174441	3	20.7	3	100	0	124	66	0	0	33	0.92
15177837--15177861	11	2.3	11	100	0	50	28	0	0	72	0.86
15177919--15177977	28	2.1	28	90	3	93	57	13	6	22	1.59
15179160--15179193	14	2.4	14	90	0	50	52	17	8	20	1.71
15184606--15184669	31	2.1	31	100	0	128	50	9	6	34	1.60
15192816--15192983	81	2.0	85	86	8	236	25	19	5	49	1.70
15194919--15194953	18	1.9	18	88	0	52	34	11	17	37	1.85
15195595--15195633	17	2.4	17	91	4	62	56	33	2	7	1.41
15196319--15196437	43	2.8	43	78	0	148	37	19	9	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15198509--15198575	30	2.2	31	78	2	73	41	2	20	34	1.68
15206086--15206134	19	2.5	20	81	15	59	26	10	2	61	1.39
15222112--15222158	15	3.1	14	82	14	58	65	2	31	0	1.04
15222112--15222171	15	4.1	15	78	16	56	68	1	30	0	0.99
15225653--15225746	42	2.2	42	94	0	161	31	22	18	27	1.97
15225670--15225740	21	3.3	23	63	15	60	35	19	21	23	1.96
15229235--15230175	471	2.0	471	94	0	1641	31	23	14	30	1.95
15233459--15233510	21	2.5	21	75	6	52	34	28	11	25	1.91
15240550--15240652	37	2.7	38	72	6	91	21	19	28	31	1.97
15245971--15246024	25	2.3	23	87	6	72	72	3	18	5	1.20
15246816--15246918	37	2.7	38	72	6	91	21	19	28	31	1.97
15278080--15278117	17	2.2	17	90	0	58	23	13	10	52	1.71
15285218--15285248	14	2.1	15	94	5	55	51	6	16	25	1.68
15285187--15285270	44	1.9	44	80	9	100	51	5	19	23	1.69
15299568--15299615	18	2.7	18	73	0	51	52	10	22	14	1.72
15305086--15305120	17	1.9	19	88	11	56	17	22	0	60	1.37
15310090--15310114	10	2.5	10	100	0	50	32	8	12	48	1.69
15311752--15311821	30	2.3	31	80	11	83	38	5	15	40	1.71
15314981--15315020	21	1.9	21	89	0	62	45	25	7	22	1.78
15315629--15315796	25	6.6	25	75	6	95	32	25	17	24	1.96
15315626--15315796	50	3.4	49	76	6	162	32	25	16	25	1.96
15324985--15325015	10	2.9	11	90	9	55	0	16	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15329845--15329882	17	2.2	17	95	0	67	26	13	7	52	1.67
15333815--15333864	15	3.3	15	80	0	55	16	28	6	50	1.68
15339548--15339951	30	13.6	29	78	11	261	36	25	1	36	1.67
15339594--15339973	89	4.3	88	77	8	296	35	25	1	36	1.67
15339658--15339951	30	9.9	30	83	5	305	36	26	1	36	1.64
15339556--15339951	59	6.7	58	77	9	311	35	25	2	36	1.68
15346254--15346599	58	6.0	58	78	12	293	35	2	27	34	1.72
15346225--15346615	116	3.4	115	79	8	386	35	3	27	34	1.73
15346225--15346607	29	13.2	30	77	10	223	35	3	27	33	1.74
15347219--15347261	20	2.2	20	86	0	59	18	46	16	18	1.84
15347231--15347274	20	2.2	20	91	0	70	15	47	20	15	1.82
15348236--15348325	6	15.3	6	71	17	64	52	3	1	43	1.25
15348243--15348314	17	4.6	16	73	14	60	55	4	1	38	1.28
15348243--15348315	16	4.6	16	77	13	71	56	4	1	38	1.27
15348249--15348325	31	2.7	29	84	11	104	53	3	1	41	1.27
15350101--15350162	21	3.0	20	75	13	54	29	25	16	29	1.96
15356645--15356706	23	2.7	22	85	11	81	77	4	0	17	0.94
15356635--15356744	28	3.6	30	80	17	113	74	4	3	17	1.13
15356640--15356744	6	18.3	6	76	12	78	75	4	3	16	1.12
15356637--15356744	11	9.5	11	76	14	96	75	4	3	16	1.12
15356751--15356787	11	3.5	11	82	14	51	21	2	5	70	1.20
15358902--15358946	19	2.4	19	81	7	56	37	0	4	57	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15361901--15361946	24	1.9	23	86	8	65	56	6	4	32	1.45
15362018--15362051	3	11.3	3	93	0	59	64	0	2	32	1.08
15362666--15362728	28	2.2	30	83	11	78	49	3	0	47	1.17
15364262--15364507	30	8.3	29	75	13	125	35	4	25	34	1.76
15364250--15364391	59	2.4	60	84	5	182	35	4	26	32	1.78
15364381--15364505	30	4.3	29	85	7	155	35	3	24	37	1.71
15366256--15366305	17	3.1	15	81	18	57	54	6	0	40	1.25
15376254--15376541	30	9.8	28	81	7	256	35	2	25	36	1.69
15377611--15377671	3	19.7	3	76	18	54	37	1	1	59	1.17
15378350--15378423	11	6.5	11	75	6	67	60	4	0	35	1.15
15378350--15378399	18	2.9	17	82	5	73	66	0	0	34	0.92
15378313--15378426	11	10.2	11	68	11	61	56	5	0	37	1.28
15380329--15380487	78	2.0	78	100	0	318	47	13	10	28	1.75
15381905--15382089	29	6.5	28	82	6	210	49	8	17	25	1.74
15381918--15382089	57	3.0	57	81	5	222	48	8	18	24	1.75
15381921--15382089	86	2.0	86	89	0	257	49	8	18	23	1.75
15387209--15387294	33	2.6	33	96	0	163	24	15	18	41	1.89
15391047--15391172	37	3.5	36	82	12	161	28	28	23	19	1.98
15408466--15408558	37	2.5	37	83	0	123	30	27	22	19	1.98
15431233--15431257	13	1.9	13	100	0	50	48	8	16	28	1.74
15433789--15433837	12	3.8	13	82	15	57	0	32	0	67	0.91
15451614--15451672	29	2.0	30	87	6	86	35	1	10	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15453432--15453479	21	2.3	21	88	0	78	56	10	29	4	1.52
15457786--15457826	15	2.7	15	79	20	50	60	7	14	17	1.55
15471458--15471542	37	2.3	37	83	0	116	28	28	21	22	1.99
15479728--15479761	15	2.3	15	89	0	50	58	17	5	17	1.57
15483617--15484063	194	2.3	193	79	4	477	27	25	18	29	1.98
15494209--15494272	25	2.6	25	89	0	101	25	20	25	29	1.99
15496335--15496402	17	4.0	17	71	16	52	47	14	17	20	1.83
15496807--15496855	12	3.8	13	82	15	57	0	32	0	67	0.91
15514811--15514869	29	2.0	30	87	6	86	35	1	10	52	1.45
15514884--15514920	18	2.1	18	89	0	56	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135