genome.fa.s2.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  73  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21896052--21896176	62	2.0	62	96	0	232	32	16	12	40	1.84
21897133--21897166	17	1.9	18	94	5	61	41	26	2	29	1.70
21902118--21902175	18	3.2	18	73	9	64	29	3	18	48	1.65
21906336--21906396	11	5.3	11	75	9	50	47	3	0	49	1.18
21906743--21906774	16	2.0	17	88	11	50	31	6	0	62	1.20
21910264--21910593	28	12.1	28	75	10	279	41	16	26	15	1.87
21910308--21910591	80	3.5	80	83	3	318	41	16	27	15	1.88
21910500--21910637	52	2.7	52	83	0	177	38	17	28	15	1.91
21912693--21912823	26	5.0	26	81	1	147	32	22	19	25	1.97
21912688--21912825	52	2.7	50	83	9	172	32	23	18	25	1.97
21919992--21920025	16	2.1	17	88	5	52	76	2	5	14	1.09
21920080--21920136	22	2.6	23	78	13	66	71	1	1	24	1.04
21920115--21920222	37	3.1	37	77	12	129	62	9	4	24	1.44
21920119--21920224	32	3.1	33	85	6	133	62	9	4	23	1.45
21921885--21922153	98	2.7	97	80	7	294	20	22	15	41	1.89
21921847--21922187	49	7.0	49	72	8	219	20	22	15	40	1.90
21921823--21922174	147	2.4	148	79	6	365	20	22	15	41	1.90
21921934--21922187	98	2.6	98	80	6	291	20	24	14	40	1.90
21933380--21933417	19	2.0	20	89	5	60	73	2	5	18	1.14
21933504--21933600	33	2.8	35	81	10	119	61	8	4	25	1.42
21933538--21933608	33	2.2	33	92	0	115	64	7	5	22	1.39
21935250--21935427	26	6.9	26	86	1	187	32	25	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21935250--21935431	52	3.5	52	81	2	206	32	25	18	24	1.97
21937316--21937509	97	2.0	97	87	4	284	37	14	18	29	1.91
21937840--21938029	29	6.6	29	77	8	165	33	4	27	35	1.76
21938979--21939007	11	2.7	11	94	5	51	75	6	0	17	1.01
21941273--21941516	78	3.1	77	85	2	319	27	20	30	22	1.98
21941259--21941828	39	14.6	39	68	14	237	26	19	30	23	1.98
21941490--21941830	78	4.4	78	84	1	405	26	19	30	23	1.98
21941345--21941828	117	4.1	117	75	10	382	26	19	30	23	1.98
21942739--21942853	46	2.5	46	91	1	178	20	22	16	40	1.91
21943948--21944675	39	18.7	39	68	11	328	26	19	29	24	1.98
21943944--21944597	78	8.4	78	83	2	740	26	19	29	24	1.99
21948856--21949049	97	2.0	97	90	0	307	35	16	20	27	1.94
21949175--21949221	14	3.3	15	80	19	64	68	4	8	19	1.33
21949179--21949233	28	2.0	28	86	13	80	69	3	10	16	1.32
21949355--21949541	29	6.6	28	80	13	170	36	4	25	33	1.75
21949353--21949528	56	3.1	55	79	12	151	35	4	27	32	1.77
21949389--21949610	58	3.9	56	80	7	189	39	3	22	34	1.70
21949460--21949609	29	5.2	28	74	11	97	44	2	20	32	1.66
21949418--21949620	28	7.1	28	67	19	89	41	3	22	32	1.70
21949480--21949645	87	1.9	87	83	4	219	42	3	21	33	1.68
21951416--21951488	34	2.2	32	88	9	112	56	6	1	35	1.35
21951424--21951479	17	3.3	17	79	0	76	57	8	1	32	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21951909--21952636	39	18.7	39	68	11	328	26	19	29	24	1.98
21951896--21952558	78	8.5	78	83	2	749	26	19	29	24	1.99
21961870--21962063	97	2.0	97	91	0	316	36	16	19	27	1.93
21962182--21962222	14	2.9	14	77	22	50	68	4	9	17	1.35
21962182--21962230	15	3.3	15	78	21	59	69	4	8	18	1.30
21962191--21962236	15	3.1	14	84	9	56	73	2	8	15	1.16
21962424--21962659	28	8.2	29	78	8	214	37	4	24	33	1.75
21962396--21962671	116	2.4	115	82	9	321	35	3	24	35	1.74
21962387--21962659	29	9.4	29	76	9	222	35	4	25	34	1.76
21964457--21964538	34	2.5	32	88	9	121	54	6	1	37	1.33
21964465--21964520	17	3.3	17	79	0	76	57	8	1	32	1.40
21964485--21964536	16	3.2	16	73	13	52	55	3	1	38	1.29
21964457--21964538	17	5.0	16	72	12	69	54	6	1	37	1.33
21969566--21969604	20	2.0	20	85	10	53	20	15	7	56	1.63
21970426--21970493	32	2.1	33	81	8	77	64	0	0	35	0.94
21974739--21974777	16	2.4	16	95	4	69	25	7	5	61	1.44
21977077--21977121	17	2.8	16	83	12	56	0	15	2	82	0.77
21988424--21988462	17	2.3	17	91	8	62	10	15	0	74	1.07
21989396--21989439	6	7.3	6	94	0	79	81	2	0	15	0.78
21989449--21989477	8	3.6	8	100	0	58	20	0	10	68	1.18
21991055--21991102	25	1.9	25	95	0	87	52	14	14	18	1.75
21992687--21992726	18	2.3	18	86	4	55	55	7	15	22	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21994604--21994632	12	2.5	12	94	5	51	6	0	37	55	1.27
21995026--21995055	15	1.9	16	93	6	53	66	0	16	16	1.25
22003551--22003640	48	1.9	46	82	8	110	70	3	7	18	1.26
22003524--22003666	76	1.9	75	82	5	182	67	4	6	20	1.31
22011081--22011128	25	2.0	24	91	4	78	41	4	0	54	1.20
22012681--22012709	14	2.0	15	93	6	51	62	0	0	37	0.96
22012678--22012723	19	2.4	18	86	10	65	63	0	0	36	0.95
22014360--22014387	6	4.7	6	100	0	56	67	0	17	14	1.22
22019940--22020068	64	2.0	63	89	6	170	52	1	27	18	1.54
22047418--22047473	11	5.0	11	75	12	51	21	16	8	53	1.69
22047401--22047478	17	4.5	17	81	1	75	20	20	10	48	1.78
22047402--22047478	34	2.2	35	86	2	102	20	19	10	49	1.77
22048509--22048573	26	2.5	26	87	0	85	30	24	18	26	1.98
22054963--22055073	22	5.0	22	83	5	116	12	24	26	36	1.91
22054963--22055073	45	2.5	44	82	5	125	12	24	26	36	1.91
22069109--22069148	5	8.0	5	100	0	80	0	20	0	80	0.72
22074410--22074461	21	2.5	21	81	6	61	28	13	26	30	1.94
22076081--22076149	24	2.9	24	95	0	120	47	15	15	20	1.82
22079766--22079862	43	2.3	43	90	0	149	43	14	12	29	1.82
22079923--22079977	27	2.0	27	92	0	92	16	16	20	47	1.83
22081236--22081295	28	2.1	28	93	0	102	50	16	0	33	1.46
22081360--22081408	23	2.1	23	85	11	64	73	8	0	18	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22081664--22081745	12	6.8	12	84	8	87	0	30	0	69	0.89
22081677--22081745	4	17.2	4	89	5	104	0	27	0	72	0.85
22081662--22081748	20	4.4	19	81	11	104	0	29	0	70	0.88
22081676--22081757	28	2.9	28	83	8	114	0	31	0	68	0.90
22081984--22082008	12	2.1	12	100	0	50	8	12	24	56	1.62
22090596--22090635	21	1.9	21	89	0	62	17	12	27	42	1.85
22092729--22092947	105	2.1	105	96	0	402	53	10	10	26	1.65
22093019--22093081	33	1.9	33	83	0	81	12	12	38	36	1.82
22104529--22104553	12	2.1	12	100	0	50	36	8	16	40	1.77
22109004--22109038	15	2.3	15	95	0	61	48	31	5	14	1.67
22111377--22111406	12	2.5	12	100	0	60	23	26	26	23	2.00
22115720--22115757	15	2.5	15	95	0	67	47	26	7	18	1.76
22115784--22115836	13	4.0	13	87	4	70	15	20	24	39	1.91
22115784--22115833	7	7.4	7	77	8	50	16	22	26	36	1.94
22116880--22116925	22	2.0	24	87	12	69	26	0	6	67	1.15
22121463--22122117	328	2.0	328	94	0	1159	29	14	19	36	1.91
22121791--22124078	611	3.8	610	90	1	3519	30	15	21	32	1.94
22130947--22131002	29	1.9	29	92	0	94	46	16	17	19	1.84
22132588--22132643	23	2.4	25	82	8	64	3	28	0	67	1.07
22134134--22134194	23	2.8	22	73	7	70	27	16	11	44	1.82
22136634--22136666	17	1.9	17	93	0	57	27	15	33	24	1.95
22138283--22138327	19	2.3	19	85	11	56	51	0	4	44	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22140866--22140905	15	2.6	15	88	4	53	47	30	12	10	1.74
22140956--22141023	7	10.0	7	76	6	68	14	23	26	35	1.94
22140965--22141026	20	3.1	20	85	0	88	14	20	24	40	1.90
22156606--22156643	16	2.2	18	90	9	62	39	0	0	60	0.97
22162748--22162786	18	2.2	18	86	9	53	20	23	0	56	1.42
22163780--22163817	16	2.2	18	86	9	53	42	0	0	57	0.98
22164687--22164930	83	3.0	82	74	11	221	43	9	14	32	1.77
22167156--22167190	3	11.7	3	93	0	61	37	34	28	0	1.58
22170942--22171374	108	4.0	108	89	0	661	38	16	15	29	1.90
22174221--22174303	11	7.5	11	68	5	60	32	46	7	13	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135