genome.fa.s2.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  23  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6375365--6375397	14	2.4	14	94	0	57	39	0	0	60	0.97
6375713--6375764	21	2.5	22	84	9	65	55	3	0	40	1.18
6375888--6375949	20	3.2	18	76	15	54	70	3	6	19	1.22
6377671--6377710	20	2.0	21	90	5	64	37	0	2	60	1.11
6378548--6378598	24	2.1	24	88	0	75	23	9	7	58	1.56
6378564--6378610	24	2.0	24	86	0	67	25	12	6	55	1.61
6378687--6378711	13	1.9	13	100	0	50	40	32	4	24	1.73
6382372--6382396	8	3.1	8	100	0	50	24	24	0	52	1.48
6396151--6396196	23	2.0	22	88	12	67	69	0	2	28	1.00
6396154--6396196	15	2.9	15	83	16	54	72	0	2	25	0.97
6396154--6396196	7	5.9	7	82	17	52	72	0	2	25	0.97
6396168--6396201	16	2.1	16	88	0	50	67	0	5	26	1.13
6400609--6400643	16	2.2	16	89	0	52	34	8	0	57	1.29
6402863--6402891	14	2.1	14	100	0	58	51	6	6	34	1.55
6414531--6414618	27	3.4	27	78	9	101	60	13	11	14	1.60
6417703--6417757	27	2.0	28	92	3	94	56	18	9	16	1.66
6418511--6418566	27	2.1	26	86	3	76	53	17	10	17	1.72
6419134--6419162	2	14.5	2	100	0	58	51	0	48	0	1.00
6419285--6419328	22	2.0	22	95	0	79	45	20	9	25	1.80
6423057--6423114	24	2.6	21	75	19	55	31	3	39	25	1.73
6423060--6423106	24	2.0	24	95	0	85	31	2	40	25	1.68
6423321--6423368	21	2.2	21	85	3	60	22	0	8	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6435783--6435864	42	1.9	43	90	5	130	34	18	15	31	1.92
6440287--6440391	52	2.0	52	90	0	165	27	38	16	18	1.91
6448584--6448643	31	1.9	32	86	3	86	51	13	6	28	1.66
6450869--6450982	23	5.0	23	78	4	106	41	25	23	9	1.85
6450869--6450982	46	2.5	45	76	12	124	41	25	23	9	1.85
6459849--6459905	28	2.0	29	86	3	80	66	0	0	33	0.92
6463716--6463766	22	2.4	22	80	12	61	33	13	13	39	1.84
6463754--6464130	78	4.8	78	89	1	531	33	22	9	35	1.85
6466116--6466173	26	2.2	26	81	12	64	56	1	0	41	1.09
6466629--6466686	26	2.2	25	79	8	62	43	3	12	41	1.59
6485358--6485494	59	2.3	59	82	5	143	35	2	29	31	1.72
6485385--6485488	30	3.5	31	76	18	121	34	0	27	36	1.64
6485389--6485511	59	2.1	59	93	0	210	32	0	30	36	1.64
6485410--6485503	30	3.2	30	71	19	97	31	1	32	34	1.65
6486677--6487097	58	7.2	59	87	3	575	33	3	30	32	1.74
6486677--6487097	59	7.2	59	88	3	584	33	3	30	32	1.74
6486696--6487103	29	13.9	30	65	21	138	33	3	30	32	1.75
6486677--6487097	117	3.6	118	87	2	591	33	3	30	32	1.74
6488955--6489046	11	8.1	11	75	12	80	54	4	1	40	1.27
6488940--6489024	17	4.9	17	86	4	100	56	3	0	40	1.16
6488948--6489042	34	2.8	34	84	6	122	54	4	1	40	1.27
6488941--6489041	17	5.9	16	80	10	76	54	3	0	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6488991--6489048	28	2.0	29	83	9	75	55	3	1	39	1.27
6489080--6489329	59	4.2	59	88	3	369	34	2	28	34	1.71
6489080--6489288	30	7.1	29	68	20	121	34	2	29	33	1.72
6489109--6489341	29	7.9	29	67	23	123	35	3	28	32	1.74
6491195--6491316	6	21.0	6	71	12	85	50	1	2	45	1.24
6491231--6491316	41	2.1	41	91	0	136	54	0	3	41	1.17
6491201--6491281	17	4.7	17	85	7	101	51	2	1	44	1.22
6491272--6491316	17	2.6	18	85	3	65	53	0	4	42	1.21
6491237--6491342	41	2.6	41	81	1	113	53	1	2	41	1.26
6491248--6491340	24	3.7	24	74	21	75	53	2	3	40	1.29
6491599--6492134	76	7.0	76	95	0	937	33	17	14	34	1.90
6492063--6492326	94	2.9	92	89	3	408	27	16	19	35	1.94
6494711--6494762	27	2.0	26	88	3	77	40	1	9	48	1.47
6495862--6495942	26	3.4	25	71	25	84	33	0	18	48	1.49
6497857--6497947	46	2.0	46	95	0	164	35	10	30	23	1.89
6498553--6498642	47	1.9	47	90	2	146	33	1	17	47	1.55
6499661--6499741	36	2.2	39	76	12	80	13	7	48	30	1.70
6499694--6499792	51	1.9	51	89	0	153	13	7	51	28	1.66
6499749--6499876	39	3.4	39	74	8	129	17	7	46	29	1.74
6499826--6500103	45	6.1	45	86	5	362	11	6	51	31	1.62
6499664--6500080	126	3.2	126	82	8	425	13	6	48	30	1.69
6499824--6500103	138	2.0	138	91	1	454	11	6	51	31	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6499826--6500103	90	3.1	90	90	3	421	11	6	51	31	1.62
6499862--6500145	138	2.1	136	86	5	383	12	6	50	30	1.65
6503361--6503498	39	3.5	39	71	11	120	23	33	18	23	1.97
6503359--6503543	78	2.4	78	83	3	228	24	30	20	25	1.98
6503792--6503928	70	2.0	70	94	0	238	40	16	15	27	1.88
6504084--6504173	47	1.9	47	93	2	155	32	1	18	47	1.56
6505268--6505365	51	1.9	51	87	4	144	14	8	51	26	1.70
6505234--6505494	126	2.1	124	87	4	377	16	7	46	29	1.74
6505397--6505722	93	3.5	93	92	2	507	11	6	50	31	1.64
6505397--6505722	45	7.0	47	81	7	384	11	6	50	31	1.64
6505399--6505722	138	2.4	135	84	4	423	12	6	50	31	1.64
6505492--6505752	138	1.9	135	85	2	333	12	6	49	31	1.65
6511700--6511764	23	2.8	23	80	2	85	30	10	16	41	1.83
6515354--6515471	36	3.2	36	72	12	114	15	10	44	30	1.79
6515351--6515471	39	3.2	39	71	15	119	14	9	44	30	1.78
6515428--6515696	45	6.1	45	77	10	261	11	7	47	33	1.68
6515441--6515597	81	1.9	80	82	7	190	12	8	44	34	1.73
6517660--6517862	30	6.8	30	74	6	169	34	5	25	34	1.79
6517660--6517862	90	2.3	90	81	6	232	34	5	25	34	1.79
6518207--6518236	15	1.9	16	93	6	53	70	6	13	10	1.34
6518181--6518227	22	2.2	22	92	3	78	76	4	6	12	1.12
6518941--6518983	19	2.3	19	84	8	52	58	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6521037--6521112	37	2.1	37	84	0	98	22	22	26	28	1.99
6521264--6521625	46	7.9	46	77	4	286	26	16	23	33	1.96
6521266--6521626	91	3.9	91	80	8	383	26	16	23	33	1.96
6522083--6522684	99	6.1	99	78	4	507	18	29	16	35	1.93
6521970--6522695	149	4.9	149	73	7	576	18	29	16	35	1.93
6521879--6522341	248	1.9	248	83	2	617	17	29	16	36	1.92
6522082--6522595	198	2.6	198	82	6	578	18	29	16	35	1.93
6521970--6522684	248	2.9	247	80	6	675	18	29	16	35	1.93
6523521--6523584	15	4.0	15	79	18	67	0	17	0	82	0.66
6523524--6523575	26	2.0	27	92	7	90	0	15	0	84	0.62
6523524--6523583	19	3.2	19	90	6	88	0	16	0	83	0.65
6523520--6523594	25	3.0	24	79	11	80	2	16	0	81	0.80
6524019--6524185	81	2.1	81	93	0	280	26	16	17	38	1.91
6529092--6529160	30	2.3	30	78	9	79	40	4	26	28	1.75
6529112--6529279	30	5.7	30	76	9	157	37	2	23	35	1.71
6529112--6529279	59	2.8	59	81	7	196	37	2	23	35	1.71
6529108--6529286	88	2.0	89	86	4	254	36	3	23	36	1.72
6531827--6532036	100	2.1	101	97	0	395	40	8	9	41	1.67
6533535--6533625	46	2.0	46	95	0	164	35	10	30	23	1.89
6534090--6534233	70	2.1	70	92	2	236	40	15	15	27	1.88
6534389--6534478	47	1.9	47	93	2	155	32	1	18	47	1.56
6535510--6535915	45	9.0	45	78	10	334	14	6	47	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6535504--6535602	51	1.9	51	87	4	146	15	7	50	27	1.69
6535557--6535709	81	1.9	81	83	5	202	18	7	44	30	1.76
6535472--6535754	132	2.2	126	85	5	379	16	7	45	30	1.74
6535658--6535915	138	1.9	138	88	1	392	12	6	48	32	1.67
6535642--6535915	90	3.0	90	86	4	370	13	6	48	32	1.67
6535678--6535961	138	2.1	136	81	5	320	15	6	47	30	1.70
6537436--6537602	29	5.7	30	69	16	116	34	2	30	32	1.71
6537472--6537693	29	7.5	30	69	20	164	35	2	28	32	1.72
6537450--6537720	59	4.6	59	91	0	418	34	3	29	32	1.74
6537437--6537720	30	9.7	29	70	19	187	34	3	29	32	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135