genome.fa.s2.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  117  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35102450--35102512	24	2.6	24	84	0	81	46	14	14	25	1.82
35108473--35108518	19	2.5	18	85	3	56	41	0	2	56	1.11
35113832--35113891	30	2.0	30	93	0	102	50	10	5	35	1.58
35117036--35117568	262	2.0	262	98	1	1034	25	17	24	32	1.97
35122513--35122552	18	2.2	18	86	0	53	70	5	0	25	1.08
35124515--35124659	62	2.3	62	79	2	166	33	11	13	40	1.81
35124647--35124980	169	2.0	168	81	4	399	35	13	14	35	1.86
35131541--35131826	30	9.8	28	80	6	241	36	1	25	37	1.66
35131541--35131803	60	4.5	60	81	7	281	37	1	24	36	1.65
35132837--35132878	16	2.8	15	80	20	52	40	0	0	59	0.97
35133516--35133617	6	18.0	6	72	15	83	54	2	0	42	1.15
35133532--35133615	17	4.9	17	88	0	114	55	3	0	40	1.17
35133516--35133616	23	4.5	22	73	17	66	55	2	0	41	1.15
35133523--35133593	28	2.5	26	81	18	81	56	4	0	39	1.19
35133549--35133609	11	5.4	11	76	9	52	59	1	0	39	1.08
35133993--35134603	39	15.7	39	72	11	394	25	19	30	24	1.98
35133993--35134642	78	8.4	77	79	7	546	24	19	30	24	1.98
35134077--35134642	117	4.9	115	76	11	535	24	19	31	25	1.98
35145401--35145661	30	8.8	28	72	10	146	33	3	24	38	1.71
35145437--35145544	29	3.7	28	75	10	83	33	2	26	37	1.71
35147363--35147447	6	15.0	6	72	20	67	55	3	0	41	1.17
35147361--35147446	17	5.2	16	78	13	86	56	3	0	39	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35147361--35147422	10	6.2	10	75	20	67	58	3	0	38	1.15
35154019--35154057	20	2.0	20	90	5	62	56	7	0	35	1.28
35162334--35162387	22	2.5	22	71	0	54	16	7	12	62	1.51
35178466--35178522	28	2.0	28	82	3	69	49	1	5	43	1.35
35179848--35179887	21	1.9	21	85	10	55	40	0	2	57	1.12
35183747--35183787	11	3.7	11	84	9	57	26	0	0	73	0.84
35185643--35185851	9	22.4	9	69	17	63	65	1	2	30	1.16
35185665--35185742	30	2.6	30	91	2	122	60	0	1	38	1.05
35185767--35185852	37	2.3	36	80	9	102	65	3	1	30	1.17
35185871--35185923	18	2.8	20	78	18	60	18	3	1	75	1.05
35186026--35186064	20	2.0	20	89	0	60	28	2	7	61	1.37
35186026--35186070	20	2.2	21	84	4	56	28	2	6	62	1.33
35186084--35186142	29	2.1	28	81	9	66	45	1	0	52	1.10
35186560--35186603	21	2.0	22	86	4	63	45	0	4	50	1.22
35194872--35194896	6	4.2	6	100	0	50	16	36	32	16	1.90
35195209--35195235	13	2.1	13	100	0	54	29	14	14	40	1.86
35198851--35198889	14	2.8	14	80	11	53	82	2	2	12	0.89
35200089--35200143	26	2.1	27	82	3	67	76	1	14	7	1.08
35201017--35201043	14	1.9	14	100	0	54	55	0	7	37	1.28
35204582--35204636	22	2.5	23	80	14	62	29	0	3	67	1.08
35204603--35204645	12	3.4	13	81	12	54	27	0	2	69	1.00
35205836--35205874	17	2.3	17	86	0	51	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35208827--35208852	3	8.7	3	100	0	52	30	0	0	69	0.89
35211135--35211191	28	2.2	26	87	12	82	38	17	31	12	1.87
35211186--35211241	22	2.5	23	82	5	78	42	23	21	12	1.86
35218129--35218325	106	1.9	106	85	6	274	40	7	5	46	1.54
35226211--35226254	21	2.1	21	87	8	63	56	2	0	40	1.11
35230854--35230884	6	5.2	6	100	0	62	48	0	35	16	1.46
35231569--35231606	2	19.5	2	94	5	69	47	0	0	52	1.00
35240119--35240159	20	2.0	20	86	9	57	58	12	0	29	1.34
35240432--35240672	82	2.9	82	90	0	383	20	12	25	41	1.87
35267839--35268083	82	3.0	82	90	0	400	41	25	12	20	1.87
35268352--35268398	20	2.3	20	82	10	60	36	0	10	53	1.36
35269631--35269659	15	1.9	15	100	0	58	20	20	31	27	1.98
35271989--35272053	26	2.5	26	90	2	105	36	1	29	32	1.67
35276358--35276422	26	2.5	26	92	2	114	36	3	27	32	1.72
35279774--35279875	29	3.4	29	72	9	80	29	20	4	45	1.72
35279747--35279870	59	2.1	60	87	4	180	25	20	6	48	1.73
35280807--35280872	31	2.2	31	86	8	91	48	9	22	19	1.77
35282322--35282353	16	2.0	17	88	11	50	62	0	12	25	1.30
35287818--35287858	15	2.5	17	80	11	59	63	0	2	34	1.08
35288184--35288259	31	2.5	31	84	0	98	61	10	2	25	1.41
35291958--35292100	52	2.8	51	84	3	178	32	24	14	27	1.95
35295337--35295390	28	2.0	27	82	13	67	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35295358--35295399	17	2.4	18	84	11	52	45	0	2	52	1.13
35297045--35297083	20	2.0	20	90	5	62	38	0	2	58	1.12
35297423--35297512	24	4.0	22	70	13	67	51	3	3	42	1.35
35298960--35298985	5	5.2	5	100	0	52	19	38	23	19	1.93
35315223--35315254	13	2.3	15	84	15	50	65	0	0	34	0.93
35315772--35315806	5	7.0	5	100	0	70	20	60	0	20	1.37
35316157--35316279	41	3.0	41	76	4	149	36	17	26	20	1.94
35316128--35316279	82	1.9	82	92	0	259	38	17	24	19	1.93
35324144--35324174	15	2.1	15	93	0	53	70	12	0	16	1.16
35324673--35324724	25	2.1	25	82	7	61	26	7	3	61	1.41
35330515--35330566	2	27.5	2	88	11	83	51	0	0	48	1.00
35333580--35333624	17	2.7	17	75	3	56	64	0	0	35	0.94
35339494--35339847	176	2.0	176	98	0	681	31	22	16	28	1.96
35341327--35341364	18	2.1	18	85	9	51	52	13	10	23	1.71
35355602--35355646	2	22.5	2	100	0	90	51	0	0	48	1.00
35356135--35356173	18	2.2	18	90	0	60	48	10	15	25	1.76
35359390--35359450	17	3.5	17	72	16	61	36	1	3	59	1.24
35359542--35359586	18	2.5	19	75	20	51	42	11	0	46	1.39
35360200--35360224	2	12.5	2	100	0	50	48	0	0	52	1.00
35364145--35364201	29	2.0	29	82	6	71	61	1	3	33	1.23
35369262--35369426	51	3.2	51	83	9	187	30	14	24	30	1.95
35371828--35371968	29	4.8	29	70	13	110	29	4	32	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35371815--35371995	58	3.1	58	80	12	208	32	4	30	32	1.79
35371828--35372016	59	3.2	59	85	5	242	31	4	30	33	1.78
35371896--35372025	30	4.5	28	73	17	79	32	3	26	36	1.75
35371923--35372026	29	3.6	29	71	15	81	32	3	23	40	1.72
35372776--35372812	18	2.1	18	89	0	56	35	8	0	56	1.29
35372783--35372819	12	3.1	12	88	11	58	32	8	0	59	1.27
35373510--35373544	18	1.9	18	88	0	52	17	8	17	57	1.64
35373976--35374413	200	2.2	201	87	1	628	20	22	20	36	1.96
35386578--35386678	28	3.5	27	72	18	87	30	2	33	32	1.73
35386555--35386678	59	2.1	59	90	3	196	31	2	32	33	1.71
35386598--35386681	29	2.8	30	74	18	95	28	3	34	33	1.75
35386587--35386682	30	3.2	30	73	19	110	28	3	34	34	1.73
35386661--35386739	28	2.8	29	80	5	90	31	5	22	40	1.76
35387015--35387080	32	2.1	32	85	2	89	63	10	10	15	1.51
35387730--35387773	3	14.3	3	81	13	54	36	4	0	59	1.18
35388466--35388500	18	1.9	18	88	0	52	17	8	17	57	1.64
35390210--35390242	7	4.7	7	96	0	57	51	0	18	30	1.46
35391195--35391250	10	5.4	10	74	16	51	5	5	19	69	1.28
35391205--35391325	33	3.7	32	75	14	106	5	5	22	66	1.35
35391203--35391345	11	12.8	11	72	11	80	5	4	23	66	1.33
35391194--35391344	21	6.7	23	73	14	84	5	5	22	66	1.32
35391265--35391346	12	7.1	12	75	8	64	3	4	23	68	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35391238--35391346	33	3.2	32	74	16	96	4	4	22	67	1.27
35393564--35393614	25	2.0	25	81	14	59	11	25	1	60	1.41
35394522--35394572	26	2.0	26	88	0	75	33	29	1	35	1.69
35395529--35395606	20	3.9	20	76	6	77	32	15	37	15	1.89
35397422--35397564	9	14.8	9	67	20	58	32	0	5	62	1.18
35397391--35397503	20	5.7	20	67	19	67	30	0	4	64	1.13
35397479--35397531	28	1.9	27	84	3	70	33	0	1	64	1.05
35406911--35406963	27	2.1	25	83	13	65	28	3	7	60	1.41
35410521--35410578	23	2.5	22	84	13	73	24	1	27	46	1.62
35410703--35410749	18	2.7	18	81	18	64	68	4	4	23	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135