genome.fa.s2.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  74  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22174221--22174303	22	3.8	22	77	6	78	32	46	7	13	1.70
22181491--22181516	10	2.6	10	100	0	52	30	7	26	34	1.85
22188430--22188573	71	2.0	71	93	0	243	26	20	25	27	1.99
22191441--22191918	245	2.0	244	97	0	902	43	14	7	34	1.74
22201389--22201427	20	2.1	18	85	9	51	56	2	7	33	1.41
22209933--22209974	21	2.0	21	86	9	59	54	9	23	11	1.66
22217709--22219581	966	1.9	977	88	1	2582	36	13	18	31	1.90
22230120--22230167	24	2.0	24	92	8	80	29	16	8	45	1.76
22240147--22240221	37	2.0	37	94	0	132	25	26	22	25	2.00
22242015--22242055	20	2.0	20	85	4	55	2	34	0	63	1.08
22259702--22259749	17	2.9	16	81	9	60	16	16	12	54	1.72
22281613--22281653	20	2.0	20	86	9	57	12	4	7	75	1.16
22290855--22290937	11	7.5	11	68	5	60	32	46	6	14	1.69
22290855--22290937	22	3.8	22	77	6	78	32	46	6	14	1.69
22296765--22296812	22	2.2	22	84	0	60	12	4	47	35	1.60
22296765--22296812	11	4.4	11	83	0	51	12	4	47	35	1.60
22320475--22320549	24	3.1	24	88	0	114	30	17	8	44	1.77
22328189--22328243	21	2.6	22	77	13	62	69	1	29	0	0.99
22332266--22332300	18	1.9	18	88	0	52	17	14	2	65	1.38
22335023--22335054	15	2.1	15	94	0	55	37	3	6	53	1.42
22346778--22346819	20	2.0	21	86	4	59	28	11	14	45	1.80
22347039--22347071	8	4.0	8	96	4	57	12	15	24	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22349724--22349778	24	2.3	24	87	0	74	52	10	9	27	1.66
22349734--22349780	24	2.0	24	95	0	85	57	8	8	25	1.57
22356055--22356348	146	2.0	146	97	0	552	30	17	19	32	1.95
22358222--22358271	26	2.0	25	84	4	64	32	4	2	62	1.25
22358402--22358440	19	2.1	19	100	0	78	51	7	20	20	1.72
22362745--22362926	91	2.0	91	89	0	274	29	15	24	30	1.95
22364057--22364216	24	6.7	24	80	2	133	25	28	23	22	1.99
22364065--22364216	48	3.2	47	76	4	160	25	27	24	22	2.00
22364057--22364197	72	2.0	72	82	0	174	27	28	22	21	1.99
22364212--22364268	27	2.1	27	90	3	87	36	21	15	26	1.93
22373990--22374099	24	4.6	24	89	0	157	23	27	27	21	1.99
22374080--22374149	27	2.6	27	86	9	97	32	22	18	25	1.97
22380225--22380280	17	3.3	16	76	16	51	14	19	10	55	1.68
22386610--22386640	15	2.1	15	93	0	53	32	3	16	48	1.62
22418219--22418258	16	2.5	16	87	0	53	17	12	0	70	1.18
22427797--22427852	24	2.3	24	87	0	85	69	3	19	7	1.27
22432358--22432396	17	2.2	18	86	4	53	30	0	17	51	1.46
22433462--22433498	15	2.5	15	100	0	74	37	16	10	35	1.83
22439343--22439389	24	2.0	24	91	0	76	23	17	14	44	1.85
22439728--22439769	21	2.0	22	90	4	68	64	9	14	11	1.50
22444919--22444957	5	7.8	5	91	8	62	0	17	0	82	0.68
22446012--22446061	21	2.4	21	83	9	59	2	36	0	62	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22453132--22453290	51	3.1	51	93	0	264	33	15	22	28	1.95
22475500--22475543	19	2.2	21	88	8	65	52	6	0	40	1.28
22475499--22475543	20	2.2	21	84	11	58	53	6	0	40	1.27
22475449--22475942	139	3.5	141	80	10	524	46	9	2	41	1.50
22475642--22475684	19	2.3	19	88	8	61	53	6	0	39	1.28
22476285--22476330	3	15.3	3	86	0	65	60	2	4	32	1.28
22476733--22476977	42	5.9	41	79	7	251	33	22	21	22	1.97
22476738--22476977	84	2.9	83	79	6	279	32	22	22	22	1.98
22476944--22477008	31	2.1	31	88	0	94	27	29	23	20	1.98
22476902--22477046	73	2.0	73	88	0	218	32	24	21	21	1.98
22476975--22477091	42	2.8	42	85	5	164	37	24	17	20	1.93
22476877--22477088	115	1.8	115	87	2	318	35	24	19	20	1.95
22478814--22478848	4	8.8	4	87	0	52	51	0	25	22	1.48
22481073--22481115	22	1.9	23	85	4	61	55	11	11	20	1.66
22507676--22507729	4	13.5	4	84	0	72	50	1	27	20	1.59
22534593--22534630	18	2.1	18	85	9	51	65	2	13	18	1.37
22535348--22535405	29	2.0	29	100	0	116	17	13	17	51	1.76
22540890--22540935	25	1.9	25	86	8	69	32	4	6	56	1.45
22544894--22544935	18	2.5	17	82	17	52	16	4	2	76	1.07
22544894--22544940	5	8.8	5	84	13	51	17	4	2	76	1.04
22545861--22545910	9	5.6	9	76	9	57	82	2	10	6	0.92
22545869--22545908	17	2.4	17	91	0	62	80	2	10	7	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22545861--22545925	19	3.4	19	83	12	80	76	1	13	7	1.06
22546967--22547038	16	4.5	16	94	0	108	38	6	27	26	1.82
22547194--22547360	58	2.9	58	85	5	221	52	1	2	44	1.22
22553204--22553249	25	1.9	23	86	8	65	32	6	4	56	1.45
22555275--22555304	15	2.0	15	93	0	51	43	33	3	20	1.68
22555337--22555386	21	2.4	21	89	0	73	26	26	22	26	2.00
22555337--22555369	11	3.1	11	82	8	50	27	33	21	18	1.96
22557478--22557585	53	2.0	53	100	0	216	39	33	3	23	1.72
22566733--22566785	23	2.4	21	81	6	52	18	22	7	50	1.72
22571065--22571131	30	2.2	30	89	0	98	43	20	22	13	1.87
22572497--22575815	214	15.7	213	74	9	2149	28	17	13	40	1.88
22573078--22575814	214	12.8	215	80	4	2720	28	16	14	40	1.88
22573078--22584284	428	26.5	427	76	8	8690	28	17	14	40	1.88
22576801--22576826	13	2.0	13	100	0	52	30	7	23	38	1.83
22576684--22579189	214	11.8	214	80	5	2491	28	17	14	39	1.89
22579042--22579368	178	1.8	179	84	3	444	29	16	14	39	1.88
22579205--22581505	215	10.8	216	80	3	2427	28	16	14	40	1.88
22581363--22581683	178	1.8	178	85	0	453	29	14	15	40	1.87
22581541--22584284	214	12.9	214	80	4	2893	28	16	14	40	1.88
22579208--22584284	855	6.0	850	82	6	4946	28	16	14	40	1.88
22584296--22584337	15	2.8	15	81	0	57	23	33	23	19	1.97
22584401--22584914	214	2.4	212	87	2	746	25	18	14	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22585236--22585365	48	2.7	48	95	0	224	24	9	14	51	1.71
22585238--22585382	48	3.0	46	88	7	168	26	9	14	49	1.74
22589462--22595808	216	29.6	215	81	4	6973	27	17	14	40	1.88
22589462--22595808	429	14.8	429	82	4	6881	27	17	14	40	1.88
22595726--22595750	12	2.1	12	100	0	50	24	28	0	48	1.52
22603426--22603467	6	7.0	6	83	0	57	4	16	0	78	0.91
22603418--22603467	24	2.1	24	92	0	82	4	18	2	76	1.04
22636898--22636936	2	19.5	2	100	0	78	51	0	0	48	1.00
22641095--22641136	16	2.6	16	80	0	57	57	0	7	35	1.26
22644426--22644985	42	13.0	44	82	4	541	24	16	26	32	1.96
22645413--22645517	49	2.1	49	82	0	120	22	22	16	38	1.93
22646382--22646441	6	10.3	6	76	16	56	1	18	0	80	0.80
22646386--22646439	18	2.8	19	86	11	74	1	18	0	79	0.82
22646382--22646441	27	2.3	25	88	11	86	1	18	0	80	0.80
22646387--22646433	15	3.2	15	79	11	53	2	19	0	78	0.85
22647132--22647174	11	3.9	11	79	11	52	0	18	2	79	0.85
22650525--22650761	120	2.0	119	90	3	377	22	23	14	39	1.91
22651808--22651852	15	2.9	15	77	6	54	46	2	15	35	1.58
22655576--22655630	25	2.2	24	78	9	58	23	0	12	63	1.29
22656524--22656588	30	2.2	30	94	0	112	56	15	3	24	1.53
22661868--22661927	10	5.5	11	77	18	56	76	0	23	0	0.78
22661880--22661927	17	2.8	17	78	9	62	75	0	25	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22661876--22661924	25	2.0	25	88	8	73	75	0	24	0	0.80
22661890--22661927	13	3.0	13	81	18	53	76	0	23	0	0.79
22662834--22662892	20	3.1	19	79	18	68	81	0	15	3	0.82
22663782--22664210	105	4.2	98	82	7	298	34	17	18	28	1.94
22663950--22664215	47	5.2	46	69	22	156	33	16	21	28	1.95
22663978--22664168	58	3.5	56	73	20	197	33	16	20	29	1.94
22663835--22664227	105	3.8	105	85	6	468	34	17	19	28	1.94
22664280--22664950	42	16.5	39	78	9	576	30	26	17	25	1.97
22664280--22664950	81	8.2	81	80	6	657	30	26	17	25	1.97
22674548--22674990	230	1.9	224	84	8	579	42	13	5	37	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135