genome.fa.s2.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  104  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31989946--31990002	12	4.8	12	80	0	60	24	24	1	49	1.60
31998032--31998075	10	4.5	10	82	5	63	79	2	11	6	1.01
31998031--31998075	19	2.3	19	84	3	63	80	2	11	6	0.99
31998479--31998728	42	6.0	42	83	3	326	20	20	24	34	1.96
31998479--31998728	83	3.0	82	85	2	347	20	20	24	34	1.96
31999034--31999570	151	3.6	151	93	1	893	42	2	9	44	1.50
31999034--31999544	52	10.2	51	67	13	245	43	2	9	44	1.50
32006202--32006673	240	2.0	235	87	2	685	37	6	14	40	1.72
32009473--32009503	16	1.9	16	93	0	53	22	3	3	70	1.16
32017069--32017111	21	2.0	21	81	4	50	51	16	2	30	1.57
32017137--32017178	18	2.5	17	80	7	50	61	7	4	26	1.42
32032182--32032222	6	6.8	6	94	0	73	36	0	63	0	0.95
32032870--32032950	25	3.1	25	70	16	74	55	0	7	37	1.28
32036499--32036545	24	1.9	24	86	4	67	42	6	17	34	1.74
32038819--32038852	18	1.9	18	88	5	52	29	0	5	64	1.17
32039190--32039214	5	5.0	5	100	0	50	60	0	0	40	0.97
32047624--32047656	3	11.0	3	100	0	66	66	0	0	33	0.92
32052943--32053138	104	1.9	104	93	2	340	33	26	15	25	1.95
32052943--32053136	52	3.7	52	87	1	282	33	26	15	24	1.95
32053951--32053992	20	2.1	20	91	8	68	33	23	0	42	1.55
32060387--32060795	103	4.0	101	73	14	324	45	8	7	37	1.64
32065385--32065419	3	11.7	3	100	0	70	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32065541--32065566	2	13.0	2	100	0	52	50	0	0	50	1.00
32073954--32073996	10	3.5	13	79	20	56	62	0	0	37	0.95
32074168--32074202	14	2.5	15	90	9	56	48	5	14	31	1.67
32074296--32074458	89	1.8	89	90	3	267	38	12	7	41	1.71
32078608--32078659	21	2.4	22	83	3	61	32	0	1	65	1.04
32078608--32078659	22	2.5	21	81	6	61	32	0	1	65	1.04
32082018--32082117	36	2.8	36	92	0	164	31	9	23	37	1.85
32082505--32082544	2	20.0	2	94	0	71	2	0	47	50	1.14
32109355--32109413	25	2.4	25	88	2	84	28	38	11	20	1.88
32126246--32126285	20	2.0	20	90	0	62	37	15	12	35	1.85
32126252--32126303	20	2.6	20	90	0	77	40	5	15	38	1.71
32131634--32131692	31	1.9	31	86	6	84	28	18	8	44	1.79
32131940--32132041	31	3.4	30	72	13	84	45	11	19	23	1.83
32131965--32132053	28	3.1	28	72	20	92	44	11	21	22	1.83
32131914--32132100	59	3.2	59	87	0	248	47	12	17	22	1.81
32138373--32138409	3	12.3	3	100	0	74	64	0	0	35	0.94
32138408--32138494	3	29.0	3	100	0	174	33	0	0	66	0.92
32138545--32138581	17	2.3	17	86	9	51	21	5	2	70	1.20
32138587--32138624	19	2.1	19	85	9	53	57	0	5	36	1.21
32139260--32139294	17	2.0	18	88	5	54	51	2	0	45	1.16
32140168--32140217	9	5.6	9	75	0	55	26	10	22	42	1.84
32140167--32140217	18	2.8	18	84	0	75	25	9	21	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32141940--32141996	26	2.2	26	93	0	96	31	19	8	40	1.82
32146199--32146271	25	2.9	25	74	8	67	23	16	23	36	1.94
32148136--32148160	5	5.0	5	100	0	50	20	0	0	80	0.72
32148142--32148216	30	2.7	27	73	20	73	32	1	5	61	1.27
32149002--32149055	20	2.7	21	82	8	67	14	5	1	77	1.03
32149003--32149029	14	1.9	14	100	0	54	18	7	0	74	1.05
32150585--32150640	21	2.7	21	85	0	67	42	14	12	30	1.82
32152611--32152795	101	1.9	98	80	10	214	36	12	22	28	1.91
32153788--32153835	21	2.2	22	92	3	80	14	8	2	75	1.13
32154784--32154823	20	2.0	21	85	5	55	42	27	5	25	1.75
32155178--32155211	13	2.5	14	85	4	52	47	11	11	29	1.76
32156181--32156221	16	2.5	17	81	14	50	78	7	14	0	0.96
32164286--32164369	3	28.0	3	97	0	159	66	1	0	32	0.99
32165646--32165895	124	2.0	125	95	0	448	30	16	13	40	1.86
32168731--32169282	185	3.0	185	95	0	1005	29	17	13	39	1.88
32184909--32184947	18	2.2	18	86	9	53	23	30	15	30	1.95
32192563--32192595	2	16.5	2	100	0	66	51	0	48	0	1.00
32193624--32193649	2	13.0	2	100	0	52	50	0	0	50	1.00
32202333--32202361	15	1.9	15	100	0	58	34	10	27	27	1.89
32204540--32204592	21	2.7	20	80	8	63	39	7	9	43	1.65
32209779--32209830	21	2.5	20	75	9	59	63	9	3	23	1.41
32210143--32210234	43	2.2	42	88	5	132	31	17	9	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32210158--32210243	43	2.0	43	95	0	154	26	18	11	43	1.84
32211480--32211518	17	2.4	16	86	4	51	43	0	2	53	1.14
32218928--32218979	5	10.0	5	80	15	52	78	1	19	0	0.84
32219943--32220056	49	2.3	49	83	3	140	37	19	28	14	1.90
32220497--32221089	207	2.9	205	91	1	945	35	20	22	21	1.96
32221423--32221467	6	8.0	6	78	14	51	44	0	2	53	1.13
32221412--32221467	17	3.4	17	87	2	78	42	0	3	53	1.18
32221412--32221463	23	2.4	22	74	6	52	40	0	3	55	1.18
32228556--32228591	18	2.0	18	88	0	54	27	36	13	22	1.92
32232623--32232668	23	2.0	23	91	0	74	13	17	21	47	1.81
32232624--32232675	23	2.3	23	86	0	68	13	15	19	51	1.75
32234611--32234765	82	1.9	82	86	2	222	31	24	20	23	1.98
32246507--32246567	22	2.9	22	79	18	67	72	1	9	16	1.19
32246533--32246562	15	1.9	16	93	6	53	70	0	13	16	1.18
32248949--32249006	24	2.4	24	94	0	98	43	25	8	22	1.82
32249618--32249697	24	3.3	24	85	0	115	32	23	21	22	1.98
32251685--32251777	17	5.5	17	82	0	123	40	3	2	53	1.29
32251688--32251757	23	2.8	25	77	18	74	41	2	2	52	1.31
32253526--32253846	30	10.9	29	72	14	151	35	24	3	37	1.71
32253584--32253875	29	10.0	31	75	13	176	35	25	3	36	1.72
32253651--32253874	59	3.8	57	79	6	225	34	25	3	37	1.73
32253651--32253872	88	2.5	88	74	12	197	34	24	3	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32258951--32259045	25	3.8	25	90	1	118	17	17	26	37	1.93
32266986--32267144	29	5.4	30	75	6	114	39	25	2	32	1.69
32267002--32267144	58	2.4	58	82	5	164	39	26	2	32	1.68
32267007--32267174	29	5.7	30	74	5	139	39	26	1	32	1.67
32267007--32267178	58	3.0	58	75	10	154	39	27	1	31	1.67
32267005--32267174	30	5.8	30	71	8	127	40	26	1	31	1.66
32267161--32267294	57	2.3	58	82	3	146	35	23	3	38	1.73
32267217--32267348	28	4.7	27	69	17	90	37	23	3	35	1.73
32277717--32277747	15	2.0	16	93	6	55	83	6	0	9	0.79
32283183--32283207	7	3.6	7	100	0	50	28	0	0	72	0.86
32285812--32285910	28	3.5	28	70	17	78	34	8	24	33	1.85
32286015--32286360	29	11.7	30	74	10	216	36	4	22	37	1.73
32285925--32286341	59	7.1	59	71	14	195	36	4	22	35	1.75
32286015--32286311	88	3.4	87	81	7	325	37	3	21	37	1.72
32285962--32286299	175	1.9	174	81	8	400	36	3	21	37	1.72
32286010--32286293	59	4.9	59	72	8	215	36	3	22	36	1.73
32287369--32287429	2	30.5	2	100	0	122	50	0	0	49	1.00
32288153--32288188	17	2.1	17	89	0	54	52	0	2	44	1.15
32288586--32289580	411	2.5	400	87	3	1361	20	22	20	35	1.96
32288586--32289580	206	4.9	206	88	3	1408	20	22	20	35	1.96
32292929--32293092	59	2.8	58	74	11	147	41	8	21	28	1.82
32293054--32293279	59	3.9	57	81	10	244	35	2	23	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32293084--32293399	29	10.8	29	75	7	235	36	2	22	37	1.69
32293148--32293387	60	4.0	60	78	10	185	38	3	20	37	1.69
32293096--32293418	118	2.7	117	80	13	342	37	3	21	37	1.69
32293154--32293426	89	3.1	86	75	14	250	38	3	20	38	1.70
32293272--32293431	29	5.4	30	76	15	113	38	5	20	36	1.74
32299209--32299270	22	2.9	21	73	7	61	22	12	30	33	1.92
32300205--32300252	16	2.9	16	84	6	60	47	33	0	18	1.49
32304555--32304601	20	2.4	19	82	10	58	46	0	2	51	1.13
32306115--32306150	17	2.1	17	89	5	54	47	2	2	47	1.31
32307021--32307095	38	1.9	39	86	5	107	37	5	1	56	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135