genome.fa.s2.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  98  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30488672--30488804	40	3.3	40	93	1	232	41	9	26	23	1.84
30493546--30493585	17	2.3	18	87	8	57	67	7	2	22	1.28
30493787--30493845	15	3.9	15	72	14	50	64	6	5	23	1.38
30494646--30494839	97	2.0	97	87	0	280	37	18	17	27	1.92
30495101--30495422	57	5.6	58	79	6	296	32	4	28	33	1.77
30495100--30495422	29	11.1	29	76	5	233	33	4	28	33	1.77
30495101--30495380	85	3.2	85	76	7	217	33	4	28	33	1.77
30497625--30498636	209	4.8	209	88	2	1399	23	22	17	36	1.95
30499518--30499658	45	3.2	45	94	2	248	17	21	15	45	1.85
30500724--30500765	3	14.0	3	94	0	75	0	33	2	64	1.07
30503909--30504100	97	2.0	97	88	4	289	35	18	18	27	1.94
30504361--30504689	29	11.4	29	79	8	251	35	4	25	34	1.77
30508298--30508397	29	3.4	29	88	2	139	52	2	1	45	1.19
30508331--30508399	13	4.8	14	73	16	52	52	1	1	44	1.19
30511959--30511983	13	1.9	13	100	0	50	24	24	16	36	1.94
30518679--30518713	13	2.6	13	95	4	61	42	0	8	48	1.33
30526739--30526765	14	1.9	14	100	0	54	7	3	0	88	0.61
30528434--30528469	14	2.6	14	90	0	63	13	30	8	47	1.73
30529850--30529887	17	2.2	17	86	9	51	44	5	13	36	1.66
30532559--30532595	10	3.9	10	82	13	51	16	0	2	81	0.81
30532559--30532593	18	1.9	18	94	0	61	17	0	2	80	0.84
30536697--30536738	15	2.8	15	81	0	57	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30537274--30537308	17	1.9	19	88	11	56	37	0	0	62	0.95
30541895--30541947	21	2.6	19	81	18	63	3	28	0	67	1.07
30541903--30541953	18	2.8	18	80	14	59	1	31	0	66	1.03
30541908--30541953	21	2.2	21	88	7	67	0	32	0	67	0.91
30551749--30551941	23	8.4	23	87	0	287	46	13	4	34	1.65
30551749--30551937	69	2.7	69	91	0	324	47	13	4	35	1.62
30555518--30555612	23	4.2	23	83	6	104	70	16	3	9	1.27
30555518--30555612	12	8.3	12	73	11	65	70	16	3	9	1.27
30555532--30555606	9	8.4	9	73	19	50	70	17	2	9	1.25
30555518--30555626	23	4.8	23	82	6	78	68	18	3	9	1.31
30555516--30555633	56	2.1	55	79	4	130	68	16	4	10	1.34
30556120--30556169	13	3.7	13	76	10	55	60	0	2	38	1.09
30559968--30560020	24	2.3	22	80	6	61	67	0	0	32	0.91
30561300--30561324	6	4.2	6	100	0	50	16	36	16	32	1.90
30561943--30562937	497	2.0	498	95	0	1814	38	19	13	28	1.90
30562921--30563017	40	2.4	40	91	0	149	23	22	8	45	1.79
30563029--30563184	84	1.8	86	87	2	235	27	26	11	33	1.91
30563029--30563184	43	3.7	43	90	1	226	27	26	11	33	1.91
30581354--30581409	21	2.7	21	72	5	51	32	23	12	32	1.92
30582073--30582165	40	2.3	40	92	0	150	26	25	6	40	1.80
30582192--30582347	43	3.6	43	92	3	244	30	23	11	34	1.90
30595619--30595869	30	8.4	30	79	4	231	36	2	25	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30597245--30597440	29	6.8	28	79	8	160	34	25	2	37	1.70
30597260--30597437	58	3.1	58	79	8	193	35	24	2	37	1.70
30597218--30597438	29	7.6	29	77	8	112	35	24	3	36	1.72
30597631--30597671	19	2.2	19	86	8	57	26	14	9	48	1.75
30597722--30598012	97	3.0	97	93	0	501	28	19	15	35	1.93
30599979--30600137	35	4.4	35	71	7	120	22	21	24	31	1.98
30599999--30600137	75	1.9	75	81	0	170	21	21	23	33	1.98
30599965--30600212	110	2.3	110	86	0	343	23	20	22	33	1.98
30602413--30602453	12	3.3	12	83	6	55	0	26	0	73	0.84
30606978--30607070	34	2.7	34	93	0	150	18	31	2	48	1.60
30612483--30612575	34	2.7	34	93	0	159	18	35	2	44	1.62
30612471--30612573	17	6.2	17	73	14	90	19	35	1	42	1.62
30613148--30613232	29	2.9	27	76	13	89	58	1	1	38	1.13
30618871--30618936	29	2.3	29	79	7	73	30	4	6	59	1.42
30624248--30624304	18	3.2	18	65	9	53	61	15	5	17	1.52
30624239--30624325	37	2.4	37	88	1	140	58	21	5	13	1.56
30646958--30647379	158	2.7	158	89	0	630	22	25	23	27	2.00
30647726--30647783	14	4.2	14	78	12	75	44	1	12	41	1.51
30647713--30647772	27	2.2	27	100	0	120	43	3	15	38	1.63
30650833--30650864	15	2.1	15	100	0	64	43	6	12	37	1.68
30654270--30654313	21	2.2	20	88	12	63	54	22	4	18	1.61
30654249--30654878	308	2.0	311	92	4	1045	41	18	8	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30656001--30656040	20	2.0	21	90	5	64	52	17	0	30	1.45
30672984--30673320	51	6.6	51	86	1	433	31	16	23	29	1.96
30675021--30675066	21	2.2	21	84	7	58	43	23	6	26	1.78
30682417--30682491	21	3.6	21	83	3	80	29	12	28	30	1.92
30683015--30683362	171	2.0	170	82	7	429	39	16	17	26	1.91
30685335--30685363	15	1.9	15	100	0	58	62	0	3	34	1.12
30686072--30686138	3	22.3	3	100	0	134	67	0	0	32	0.91
30686321--30686389	16	4.3	16	76	7	59	17	39	15	27	1.90
30687354--30687407	17	3.1	17	82	15	74	70	3	7	18	1.26
30690132--30690229	49	2.0	50	95	2	180	25	13	8	53	1.67
30693861--30693913	17	2.9	18	77	11	54	56	1	1	39	1.21
30717010--30717115	31	3.5	31	71	14	105	26	13	8	51	1.69
30717010--30717203	58	3.2	58	80	5	190	25	14	10	49	1.75
30717403--30717490	31	2.8	31	86	3	115	53	7	12	26	1.65
30718163--30718217	29	2.0	27	82	13	67	20	18	5	56	1.61
30723626--30723750	29	4.2	30	80	7	121	32	24	4	38	1.77
30723643--30723769	60	2.2	59	81	8	143	29	26	5	37	1.79
30723930--30723990	29	2.1	29	90	0	95	24	16	4	54	1.62
30727372--30727426	24	2.3	24	100	0	110	54	7	12	25	1.63
30727538--30727609	24	3.0	24	77	2	72	33	26	19	20	1.97
30727599--30727761	27	6.0	27	92	0	245	36	25	15	22	1.94
30739682--30739813	68	1.9	68	87	0	192	35	22	18	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30739750--30740201	38	11.6	41	76	12	332	30	25	18	25	1.98
30739750--30740201	78	5.8	78	78	9	374	30	25	18	25	1.98
30739765--30740162	118	3.4	118	82	6	445	30	24	18	25	1.98
30741738--30741888	31	5.0	30	74	4	115	31	25	7	35	1.83
30742952--30743052	31	3.2	29	71	18	78	32	31	7	27	1.86
30743630--30743706	37	2.1	37	100	0	154	49	15	5	29	1.66
30748270--30748345	40	1.9	40	94	0	134	18	38	17	26	1.92
30750026--30750099	25	2.9	25	77	2	76	29	22	22	24	1.99
30750032--30750108	25	3.1	25	77	3	75	28	20	24	25	1.99
30752557--30752630	32	2.3	32	84	9	89	22	1	2	72	1.04
30755368--30755827	157	2.9	157	82	4	566	21	22	26	29	1.99
30766001--30766053	23	2.6	19	74	25	54	41	3	0	54	1.18
30766290--30766403	61	1.9	60	83	5	149	44	14	16	23	1.85
30771613--30771649	2	18.5	2	100	0	74	0	48	0	51	1.00
30771649--30771681	2	16.5	2	100	0	66	48	0	0	51	1.00
30780460--30780498	20	2.0	19	85	5	51	38	5	35	20	1.75
30784094--30784240	42	3.5	42	86	0	186	25	27	11	35	1.90
30785636--30785942	157	2.0	157	80	5	352	34	17	15	31	1.92
30786257--30786310	29	1.9	27	85	7	72	24	5	7	62	1.42
30787632--30787695	2	33.0	2	85	6	87	0	51	0	48	1.00
30792254--30792324	35	2.0	35	97	0	133	35	14	18	32	1.90
30796175--30796211	18	2.1	18	90	10	58	72	0	0	27	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30796830--30796869	18	2.2	18	90	0	62	50	5	5	40	1.46
30802827--30802852	13	2.0	13	100	0	52	46	23	23	7	1.78
30803436--30803470	6	5.8	6	100	0	70	34	65	0	0	0.93
30805450--30805476	12	2.2	12	100	0	54	92	0	7	0	0.38
30812913--30812956	3	14.7	3	95	0	79	31	0	2	65	1.05
30813162--30813268	52	2.1	52	96	0	196	42	12	7	38	1.71
30813888--30813944	28	2.0	28	96	0	105	36	8	17	36	1.81
30815152--30815298	61	2.5	60	83	3	179	54	10	10	24	1.66
30815337--30815373	3	12.3	3	94	0	56	35	5	0	59	1.20
30822509--30822542	17	1.9	18	88	5	52	35	23	0	41	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135