genome.fa.s2.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  122  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36940429--36940493	31	2.1	31	85	0	85	44	7	12	35	1.71
36940973--36940999	13	2.1	13	100	0	54	37	44	7	11	1.68
36941516--36941551	19	1.9	19	88	5	56	16	5	19	58	1.58
36942153--36942201	16	2.9	18	77	20	52	51	0	0	48	1.00
36944703--36944792	29	3.0	31	83	9	123	37	30	18	13	1.89
36944700--36944792	31	3.1	29	85	6	123	36	31	19	12	1.89
36946424--36946474	22	2.3	22	86	10	68	66	3	3	25	1.26
36946509--36946562	28	1.9	28	96	0	99	62	3	5	27	1.34
36950307--36950364	30	2.0	29	86	10	82	51	0	0	48	1.00
36950787--36950818	1	32.0	1	93	0	55	96	0	3	0	0.20
36950961--36950993	17	1.9	17	93	0	57	57	15	9	18	1.63
36955356--36955398	16	2.7	16	100	0	86	46	13	16	23	1.83
36957175--36957277	48	2.1	48	87	0	143	23	42	10	23	1.85
36958266--36958299	12	2.9	12	91	4	52	26	0	5	67	1.13
36961406--36961463	31	1.9	30	89	10	91	58	0	0	41	0.98
36961631--36961680	23	2.1	23	85	7	64	48	2	2	48	1.24
36961631--36961685	24	2.2	24	81	12	67	49	1	1	47	1.23
36966577--36966619	8	5.2	8	77	5	50	53	0	2	44	1.13
36969486--36969520	17	2.1	17	100	0	70	5	5	17	71	1.25
36969463--36969554	39	2.4	39	82	7	100	6	7	18	67	1.37
36969525--36969612	24	3.7	23	77	7	68	11	7	12	68	1.40
36969502--36969588	37	2.4	36	81	7	88	10	6	14	67	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36970962--36971003	21	1.9	23	85	9	61	45	2	4	47	1.36
36970962--36971010	21	2.2	23	82	7	57	44	2	4	48	1.33
36971168--36971243	10	7.6	10	77	15	61	42	0	1	56	1.07
36971168--36971243	19	3.8	20	76	10	75	42	0	1	56	1.07
36971203--36971271	26	2.6	24	78	17	75	37	0	1	60	1.06
36974045--36974520	59	8.0	60	73	11	325	28	17	14	40	1.88
36974045--36974520	58	8.0	59	72	11	292	28	17	14	40	1.88
36974045--36974520	122	4.0	120	77	9	456	28	17	14	40	1.88
36977247--36977291	20	2.4	19	85	10	65	22	6	4	66	1.33
36979042--36979077	18	2.1	17	89	5	54	33	19	0	47	1.50
36979503--36979543	20	2.0	20	85	0	55	4	19	2	73	1.13
36980467--36980564	30	3.3	30	84	4	108	29	7	3	60	1.39
36981363--36982227	59	14.6	57	71	11	472	40	15	17	26	1.89
36981365--36982235	119	7.3	120	72	11	334	40	15	17	26	1.89
36981365--36982235	179	4.9	180	72	13	458	40	15	17	26	1.89
36981419--36981877	120	3.8	120	76	8	310	39	16	18	26	1.91
36999784--36999821	16	2.4	16	95	0	67	44	5	21	28	1.73
36999991--37000107	57	2.1	57	90	3	182	50	1	0	47	1.11
37000001--37000114	10	11.6	10	69	17	78	51	1	0	46	1.11
37001602--37001659	20	3.0	20	80	9	59	62	1	3	32	1.22
37002235--37002283	15	3.3	15	77	5	55	26	0	10	63	1.26
37003715--37003924	110	1.9	109	87	2	305	39	8	12	39	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37005116--37005146	2	15.5	2	100	0	62	48	0	0	51	1.00
37015059--37015086	2	14.0	2	100	0	56	50	0	0	50	1.00
37016329--37016832	249	2.0	250	98	0	967	40	11	13	35	1.80
37017331--37017374	18	2.4	18	85	11	63	70	2	0	27	0.99
37017331--37017373	9	4.8	9	80	11	52	72	2	0	25	0.97
37017331--37017373	17	2.4	18	88	7	61	72	2	0	25	0.97
37017411--37017509	19	5.2	19	72	8	76	53	1	2	43	1.19
37017438--37017522	10	8.8	10	69	20	56	56	1	0	42	1.07
37017472--37017522	19	2.7	20	87	6	70	54	0	0	45	0.99
37017748--37017902	20	7.8	20	73	14	99	37	7	1	53	1.39
37017804--37017899	10	9.4	10	70	17	63	41	4	2	52	1.32
37017803--37017874	21	3.5	21	77	7	67	40	5	2	51	1.40
37025609--37025637	1	29.0	1	100	0	58	0	100	0	0	0.00
37034649--37034694	25	1.9	25	86	8	69	34	4	6	54	1.46
37035790--37035819	13	2.4	13	94	5	53	26	3	0	70	1.03
37035790--37035831	13	3.2	13	83	9	50	23	2	0	73	0.94
37037601--37037626	5	5.2	5	100	0	52	19	0	42	38	1.51
37037753--37037795	22	2.0	22	95	0	77	41	27	20	9	1.83
37040532--37040586	24	2.3	24	80	0	65	41	1	5	50	1.36
37040514--37040562	18	2.7	18	78	9	55	40	6	4	48	1.47
37040547--37040584	18	2.1	18	90	0	58	47	0	0	52	1.00
37040554--37040611	17	3.5	16	81	11	55	39	0	6	53	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37041684--37041727	22	2.0	23	82	13	56	63	2	13	20	1.40
37042451--37042746	30	9.9	30	92	2	461	36	24	3	35	1.71
37042568--37042622	15	3.3	19	63	36	54	40	27	3	29	1.73
37042628--37042682	15	3.3	19	63	36	54	43	27	0	29	1.55
37042718--37042855	59	2.4	58	84	9	174	31	28	3	36	1.75
37042755--37042850	29	3.2	30	72	18	101	31	26	3	39	1.72
37048180--37048223	13	3.5	12	84	6	52	77	4	18	0	0.94
37049669--37049802	51	2.7	50	84	3	171	38	23	24	13	1.91
37050098--37050362	38	7.0	38	71	15	192	34	13	18	32	1.90
37050056--37050362	76	4.0	76	93	0	454	34	14	17	33	1.91
37051100--37051143	22	2.0	23	82	13	56	63	2	13	20	1.40
37051869--37052347	30	15.9	30	90	1	708	38	23	2	36	1.67
37051869--37052343	121	3.9	121	92	1	758	38	23	2	36	1.67
37051869--37052347	151	3.2	150	90	2	746	38	23	2	36	1.67
37052360--37052509	29	5.1	29	74	21	152	32	26	3	38	1.72
37052321--37052516	58	3.4	57	88	5	277	32	27	3	36	1.74
37055366--37055411	25	1.9	23	86	8	65	34	4	6	54	1.46
37061985--37062009	3	8.3	3	100	0	50	36	0	32	32	1.58
37076536--37077025	96	5.1	96	88	1	642	21	19	20	39	1.93
37076536--37077190	192	3.5	189	85	4	843	20	18	20	40	1.92
37076951--37077106	81	1.9	81	86	2	224	19	18	21	40	1.92
37076855--37077259	177	2.3	177	91	2	661	20	18	21	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37077229--37077363	69	2.0	69	88	2	200	20	20	17	41	1.90
37077298--37077498	96	2.1	96	84	0	258	23	20	15	39	1.91
37088111--37088136	3	8.7	3	100	0	52	65	0	0	34	0.93
37090074--37090102	14	2.1	14	100	0	58	31	20	34	13	1.92
37109609--37109651	20	2.2	20	87	8	61	46	4	6	41	1.51
37116473--37116516	20	2.3	20	88	7	65	50	6	0	43	1.29
37116983--37117014	16	1.9	16	93	6	55	43	0	0	56	0.99
37117953--37118002	24	2.1	24	85	7	66	66	2	0	32	1.03
37121879--37121926	22	2.2	22	88	0	69	14	16	4	64	1.43
37124557--37124593	9	4.1	9	92	0	56	48	8	10	32	1.67
37126238--37126294	24	2.3	25	81	3	62	42	0	5	52	1.24
37131873--37132211	30	11.5	31	68	22	176	33	3	29	33	1.74
37131866--37132239	59	6.3	59	89	2	554	33	3	30	32	1.75
37134171--37134237	17	4.0	16	84	9	89	53	4	1	40	1.30
37134160--37134246	34	2.5	34	84	1	111	54	4	1	40	1.29
37144475--37144557	30	2.7	30	83	1	85	50	13	10	25	1.73
37144486--37144557	31	2.4	30	88	2	99	48	15	11	25	1.77
37144775--37144812	20	1.9	20	89	10	60	18	10	15	55	1.68
37149067--37149108	21	2.0	21	85	0	57	57	0	4	38	1.20
37149444--37149508	29	2.3	29	81	7	71	53	4	7	33	1.50
37149562--37149608	17	2.8	17	84	12	53	51	0	0	48	1.00
37150662--37150709	2	24.0	2	100	0	96	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37155651--37155685	5	7.2	5	87	6	54	34	0	0	65	0.93
37155651--37155692	14	2.8	15	85	10	59	30	2	0	66	1.04
37159027--37159149	52	2.3	52	83	5	149	34	23	13	27	1.93
37159075--37159240	85	2.0	85	87	2	244	34	21	12	31	1.90
37159156--37159260	52	2.0	52	96	0	192	32	22	13	31	1.93
37164913--37164980	28	2.4	29	76	14	70	38	4	1	55	1.29
37175854--37175904	3	17.3	3	77	4	50	66	0	29	3	1.09
37178695--37178745	24	2.2	23	82	10	59	37	0	0	62	0.95
37193759--37193794	11	3.3	11	88	0	54	22	5	8	63	1.43
37193960--37193992	14	2.3	15	85	15	52	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135