Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  135  of  135  ( 16151 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41939433--41939463
15
2.1
15
93
0
53
67
0
0
32
0.91
41950979--41951030
6
9.0
6
93
4
81
0
17
11
71
1.15
41961564--41961643
33
2.4
35
81
10
87
47
0
2
50
1.14
41961565--41961643
17
4.8
17
84
3
90
46
0
2
50
1.14
41963533--41963667
29
4.7
29
70
18
102
35
25
2
36
1.71
41963534--41963787
58
4.3
58
80
6
280
34
26
2
36
1.71
41963534--41963684
29
5.2
28
70
12
90
36
24
2
36
1.70
41963631--41963723
29
3.2
29
73
13
91
34
22
2
40
1.66
41974457--41974930
98
4.8
98
90
2
679
38
19
24
17
1.93
41974459--41974939
49
9.8
49
71
9
320
38
19
24
17
1.93
41975365--41975430
17
3.8
17
85
2
78
40
0
1
57
1.08
41975392--41975437
23
2.0
22
87
4
65
41
0
0
58
0.98
41975362--41975437
34
2.3
34
84
11
95
42
0
1
56
1.07
41977259--41977330
30
2.4
30
86
4
92
33
23
4
38
1.74
41977584--41977640
19
3.0
19
82
5
71
38
0
1
59
1.08
41978669--41978975
29
10.6
28
72
17
193
33
26
3
36
1.73
41978758--41979097
29
11.5
30
69
20
166
32
26
5
35
1.78
41978674--41979086
59
7.1
59
81
8
418
33
26
4
35
1.76
41978669--41979067
29
13.6
31
68
20
152
33
26
3
36
1.73
41991288--41991340
24
2.3
23
87
6
72
67
0
0
32
0.91
41992184--41992234
12
4.2
12
75
12
50
43
11
13
31
1.80
42000253--42000291
20
2.0
20
85
10
53
30
20
12
35
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42002059--42002289
115
2.0
115
99
0
453
35
13
12
37
1.83
42004318--42004343
2
13.0
2
100
0
52
50
0
0
50
1.00
42006719--42006743
6
4.2
6
100
0
50
68
0
0
32
0.90
42006793--42006834
17
2.5
17
96
0
75
59
16
0
23
1.37
42007990--42008078
14
6.4
14
90
0
133
37
26
21
14
1.92
42007990--42008083
7
13.4
7
73
0
80
36
26
22
14
1.93
42008082--42008124
22
2.0
22
85
0
59
27
27
20
23
1.99
42008108--42008151
22
2.0
22
86
0
61
29
22
25
22
1.99
42010953--42011012
30
2.0
30
100
0
120
23
36
10
30
1.87
42013904--42013944
14
3.2
13
80
12
50
60
0
2
36
1.10
42015138--42015164
14
1.9
14
100
0
54
37
22
18
22
1.95
42015131--42015198
21
3.3
20
82
10
75
39
19
19
22
1.92
42015199--42015260
22
2.8
22
73
9
63
29
24
22
24
1.99
42018439--42018465
3
9.0
3
100
0
54
33
0
0
66
0.92
42018464--42018498
3
11.7
3
87
0
52
0
5
31
62
1.18
42018464--42018498
12
2.9
12
95
0
61
0
5
31
62
1.18
42020407--42020444
11
3.5
11
88
0
58
44
2
28
23
1.67
42031131--42031156
2
13.0
2
100
0
52
50
50
0
0
1.00
42037062--42037427
183
2.0
183
98
0
714
26
18
15
39
1.91
42041868--42041903
19
1.9
19
94
5
65
19
11
16
52
1.73
42043553--42043596
21
2.1
21
87
4
63
2
25
4
68
1.20
42045891--42045944
26
2.1
26
92
0
90
22
25
14
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42046069--42046259
95
2.0
95
100
0
382
20
25
29
25
1.99
42047357--42047401
19
2.2
21
88
7
67
37
15
15
31
1.89
42048247--42048272
12
2.2
12
100
0
52
15
23
0
61
1.33
42050551--42050602
14
3.8
13
80
12
52
9
0
40
50
1.35
42050621--42050676
7
7.9
7
78
11
51
8
1
46
42
1.45
42050620--42050680
14
4.3
14
76
12
70
8
1
50
39
1.42
42050639--42050693
28
2.0
28
85
7
76
5
7
50
36
1.53
42050614--42050717
21
4.9
21
75
15
81
4
7
49
38
1.53
42050749--42050830
27
3.1
25
75
8
67
2
17
56
24
1.53
42050656--42051247
7
84.9
7
78
6
162
3
11
50
33
1.57
42051183--42051292
29
3.8
29
74
8
91
6
2
49
41
1.42
42051180--42051284
7
14.9
7
80
9
79
6
1
50
40
1.39
42052043--42052078
19
1.9
19
94
5
65
19
11
16
52
1.73
42053728--42053771
21
2.1
21
87
4
63
2
25
4
68
1.20
42056067--42056120
26
2.1
26
92
0
90
22
25
14
37
1.93
42056245--42056435
95
2.0
95
100
0
382
20
25
29
25
1.99
42057533--42057577
19
2.2
21
88
7
67
37
15
15
31
1.89
42058422--42058447
12
2.2
12
100
0
52
15
23
0
61
1.33
42060717--42060768
14
3.8
13
80
12
52
9
0
40
50
1.35
42060790--42060848
14
4.1
14
82
4
73
10
0
44
45
1.37
42060786--42060858
21
3.5
21
78
12
78
8
1
50
39
1.41
42060787--42060894
7
16.0
6
74
14
54
5
6
48
39
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42060783--42060859
7
10.9
7
79
8
66
7
1
50
40
1.39
42060857--42060898
13
3.2
13
90
6
59
0
16
50
33
1.46
42060812--42060891
20
4.0
20
80
6
72
3
8
50
37
1.52
42060808--42060898
7
13.4
7
79
10
64
3
8
50
37
1.50
42060894--42061019
7
18.7
7
82
4
91
1
19
55
23
1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135

The End!