genome.fa.s2.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  51  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13863970--13864003	16	2.2	15	89	5	50	67	5	0	26	1.13
13871937--13871984	17	2.8	17	77	0	51	52	8	16	22	1.71
13872388--13872448	24	2.4	27	81	15	76	1	29	0	68	0.99
13872388--13872449	30	2.0	32	87	12	94	1	30	0	67	1.00
13883964--13884003	19	2.1	19	85	0	53	25	40	22	12	1.89
13883989--13884032	18	2.4	18	88	3	61	34	40	11	13	1.81
13884034--13884143	7	16.0	7	75	3	53	20	20	20	38	1.94
13884059--13884130	28	2.6	28	84	0	90	23	23	18	34	1.96
13890560--13890712	54	2.8	54	86	0	216	32	16	26	25	1.96
13893594--13893785	57	3.4	56	77	7	190	34	17	20	27	1.95
13893688--13893777	29	3.2	29	64	25	66	35	16	21	26	1.94
13893620--13893776	56	2.8	57	79	6	158	35	17	20	26	1.95
13893808--13893880	30	2.4	29	82	6	92	28	13	26	31	1.94
13901692--13901749	23	2.4	24	82	8	64	25	0	25	48	1.52
13904720--13904800	26	3.1	26	92	3	128	38	4	11	45	1.61
13905078--13905136	31	1.9	30	86	3	82	44	11	0	44	1.41
13908660--13908694	18	1.9	18	88	0	52	5	28	8	57	1.52
13910456--13910506	22	2.3	23	86	10	70	49	1	7	41	1.43
13919202--13919751	29	18.9	28	74	11	163	33	5	28	33	1.79
13919222--13919441	87	2.5	87	90	1	343	31	8	27	32	1.86
13919202--13919828	59	10.7	60	76	9	419	33	4	27	33	1.79
13919308--13919828	88	5.9	85	81	7	381	34	3	28	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13919308--13919828	29	17.8	29	80	7	441	34	3	28	33	1.75
13919483--13919850	30	12.6	29	79	5	177	34	3	28	33	1.74
13921555--13921627	17	4.3	18	74	8	64	52	5	4	38	1.44
13922069--13922278	79	2.7	78	84	0	267	26	20	29	23	1.99
13922179--13922821	39	16.6	38	77	10	393	23	21	30	24	1.99
13922069--13922821	78	9.7	78	77	7	463	24	20	30	24	1.99
13922133--13922488	193	1.8	196	88	1	556	23	19	30	25	1.98
13922330--13922783	155	2.9	154	80	5	443	23	21	30	24	1.99
13922132--13922821	117	5.9	116	76	6	565	23	21	30	25	1.99
13927786--13927844	2	29.5	2	100	0	118	0	49	0	50	1.00
13928249--13928306	31	1.9	31	96	3	109	20	24	18	36	1.95
13935256--13935738	29	16.6	28	80	7	382	33	4	28	33	1.77
13935272--13935465	86	2.3	87	84	7	254	32	5	28	34	1.79
13935256--13935521	57	4.6	58	79	4	188	32	4	27	34	1.78
13935401--13935752	59	6.0	59	83	4	428	33	3	28	33	1.76
13935252--13935738	118	4.2	116	81	7	467	32	4	28	33	1.77
13938419--13938468	22	2.2	22	82	10	57	48	2	10	40	1.48
13941411--13941679	42	6.6	42	84	5	338	23	15	31	29	1.95
13941417--13941678	81	3.2	81	89	0	398	24	16	31	28	1.96
13943700--13943917	59	3.7	61	75	13	197	35	19	4	41	1.70
13943720--13943938	30	7.4	30	77	11	161	33	21	4	40	1.73
13943720--13943938	89	2.5	89	79	5	223	33	21	4	40	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13954547--13956279	576	3.0	576	98	0	3367	29	19	20	30	1.97
13966905--13967405	49	10.3	48	72	12	351	36	15	28	19	1.93
13966901--13967251	98	3.6	98	89	1	524	36	16	28	18	1.93
13967119--13967394	143	1.9	143	85	1	374	36	15	26	20	1.93
13972716--13972891	30	5.9	30	71	12	123	35	19	5	39	1.74
13977984--13978090	50	2.1	50	91	0	169	28	30	10	29	1.90
13978557--13978592	15	2.4	15	100	0	72	25	13	13	47	1.80
13978796--13978983	52	3.6	53	86	2	272	36	23	13	25	1.92
13986355--13986389	18	1.9	18	88	0	52	14	34	11	40	1.82
13986392--13986426	18	1.9	18	94	0	61	11	28	8	51	1.67
13987176--13987235	26	2.4	24	78	10	66	60	1	3	35	1.23
13991918--13992007	7	12.9	7	73	6	58	21	0	38	40	1.53
13991928--13992002	21	3.6	21	73	10	73	24	0	34	41	1.55
13991929--13992007	35	2.3	35	86	4	106	22	0	36	40	1.55
13998105--13998152	16	2.8	17	75	15	53	43	4	0	52	1.20
14018290--14018336	24	2.0	24	82	0	58	29	14	6	48	1.69
14020276--14020330	24	2.3	24	83	0	65	29	14	7	49	1.70
14024188--14024229	14	2.9	15	75	10	52	69	9	2	19	1.28
14024224--14024292	12	5.5	12	77	14	68	76	7	0	15	0.99
14024310--14024350	15	2.4	17	76	23	50	68	9	2	19	1.29
14024318--14024349	15	2.1	16	94	5	57	71	12	0	15	1.14
14024531--14024556	7	3.7	7	100	0	52	88	0	0	11	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14025273--14026003	49	14.9	49	77	5	537	17	22	18	40	1.91
14025255--14026003	98	7.6	99	77	6	596	18	22	18	40	1.91
14025290--14026027	147	5.0	147	80	2	703	17	23	18	40	1.91
14025271--14025951	196	3.5	196	79	4	680	18	23	18	40	1.91
14027112--14027207	45	2.1	47	88	3	142	15	19	14	50	1.79
14035135--14035170	15	2.4	16	90	9	58	75	5	0	19	1.00
14035126--14035315	96	1.9	97	83	11	242	65	6	6	22	1.39
14036196--14036239	23	1.9	23	86	9	63	56	4	0	38	1.20
14036536--14036582	16	2.9	16	83	0	58	31	21	2	44	1.64
14039522--14039563	21	2.0	21	85	0	57	66	7	4	21	1.35
14040393--14040469	32	2.4	32	86	4	102	32	18	14	35	1.91
14044690--14044827	40	3.4	41	84	6	183	52	6	20	21	1.69
14044800--14044871	24	3.0	24	83	0	90	51	5	23	19	1.68
14046642--14046674	16	2.1	16	100	0	66	30	0	21	48	1.50
14052832--14052935	41	2.5	40	84	3	145	50	2	19	27	1.62
14052836--14052935	40	2.5	39	83	8	128	50	3	19	28	1.62
14053383--14053427	13	3.5	13	84	6	56	46	0	11	42	1.39
14055076--14055106	16	1.9	16	93	0	53	22	16	0	61	1.34
14057296--14057350	24	2.5	22	80	13	67	50	7	16	25	1.70
14057303--14057357	24	2.2	24	93	3	92	49	7	16	27	1.72
14059945--14060026	3	27.3	3	87	9	123	0	31	0	68	0.90
14065719--14065765	15	3.4	14	83	13	53	14	34	6	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14065727--14065765	15	2.6	15	91	0	60	17	33	7	41	1.79
14067102--14067158	24	2.5	24	83	13	68	47	5	17	29	1.70
14068761--14068788	2	14.0	2	100	0	56	0	50	0	50	1.00
14069486--14069541	28	2.0	28	86	3	78	42	10	7	39	1.67
14071895--14071935	21	2.0	21	85	9	57	43	0	14	41	1.45
14072247--14072512	80	3.3	80	85	3	365	22	17	27	32	1.96
14080579--14080698	30	4.0	30	81	4	127	36	9	22	31	1.86
14081591--14081661	37	1.9	37	94	0	124	5	9	50	33	1.59
14082114--14082201	34	2.6	34	78	8	81	26	1	28	44	1.62
14082145--14082285	77	1.9	75	82	5	176	21	1	30	46	1.60
14100323--14100366	18	2.4	18	85	7	54	36	25	18	20	1.95
14108974--14109020	24	2.0	24	95	0	85	25	17	8	48	1.74
14119601--14119660	21	2.9	21	80	5	68	40	33	16	10	1.82
14123146--14123195	25	2.0	25	88	0	73	32	22	24	22	1.98
14127144--14127199	21	2.6	21	97	2	103	64	0	16	19	1.29
14127782--14127877	46	2.1	45	98	1	183	36	19	18	25	1.95
14128312--14128472	24	6.8	24	85	3	209	23	20	24	31	1.98
14128316--14128491	72	2.5	73	88	2	259	22	19	25	32	1.97
14136673--14136713	21	1.9	22	90	5	66	24	29	31	14	1.95
14144396--14144428	16	2.0	17	88	5	50	6	15	6	72	1.24
14149178--14149211	17	2.0	17	88	0	50	5	14	5	73	1.21
14149950--14149975	9	2.9	9	100	0	52	57	7	0	34	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14152479--14152521	16	2.8	16	80	20	56	11	6	6	74	1.21
14161922--14161974	21	2.5	21	81	0	61	33	15	20	30	1.93
14165744--14165775	6	5.3	6	96	0	55	31	34	12	21	1.91
14174261--14174299	18	2.2	18	90	0	60	10	10	5	74	1.21
14177029--14177106	19	4.3	18	72	22	65	60	1	1	37	1.13
14177024--14177105	20	4.6	18	70	19	57	60	1	1	36	1.12
14186772--14186834	30	2.1	31	82	8	76	50	7	0	41	1.31
14187563--14187596	9	3.7	9	96	4	59	55	20	0	23	1.43
14195052--14195105	7	7.7	7	91	0	90	18	0	37	44	1.50
14196612--14196647	17	2.1	17	89	0	54	2	13	13	69	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135