genome.fa.s2.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  127  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38620711--38620849	55	2.5	57	77	10	160	10	5	15	68	1.37
38620802--38620914	44	2.6	44	77	5	120	11	4	16	67	1.38
38622034--38622091	31	1.9	31	82	10	75	36	15	8	39	1.78
38622692--38622785	49	1.9	49	91	0	152	45	9	13	30	1.76
38628329--38628353	2	12.5	2	100	0	50	0	0	48	52	1.00
38635115--38635166	26	2.0	26	92	3	88	48	3	19	28	1.66
38636033--38636103	27	2.8	25	80	14	74	28	7	43	21	1.78
38636052--38636103	27	1.9	27	92	0	86	28	5	46	19	1.73
38638696--38638882	52	3.6	52	91	2	304	37	24	12	25	1.91
38644684--38644719	17	2.1	17	100	0	72	50	0	0	50	1.00
38646779--38647008	29	7.8	30	71	18	162	34	3	27	33	1.74
38646747--38647156	59	7.0	59	85	4	476	33	3	29	33	1.75
38646749--38647124	30	12.8	29	66	18	181	34	3	28	33	1.76
38646937--38647167	30	8.0	28	69	12	94	32	3	30	34	1.73
38647227--38647561	163	2.1	162	90	2	528	41	13	18	26	1.87
38649246--38649326	6	13.8	6	75	19	82	54	0	1	44	1.08
38649246--38649326	25	3.5	22	78	8	90	54	0	1	44	1.08
38649247--38649347	16	6.3	16	85	8	125	56	0	0	42	1.06
38649248--38649342	17	5.9	17	85	9	119	56	0	1	42	1.06
38649248--38649337	47	1.9	47	90	4	146	56	0	1	42	1.06
38653225--38653581	29	12.4	29	73	14	151	33	3	29	33	1.75
38653232--38653501	57	4.7	57	77	5	244	33	3	29	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38653260--38653533	86	3.2	84	80	12	274	33	4	28	32	1.77
38653232--38653574	57	6.0	57	74	11	215	33	3	29	32	1.76
38653313--38653590	86	3.2	87	82	6	235	33	3	29	33	1.76
38653517--38653581	30	2.2	30	91	0	103	40	1	24	33	1.65
38653524--38653600	30	2.6	30	87	4	102	38	1	22	37	1.62
38654716--38654750	10	3.5	10	88	0	52	34	0	0	65	0.93
38661982--38662029	17	2.7	17	80	6	51	33	4	4	58	1.36
38665729--38665760	2	16.0	2	100	0	64	50	0	0	50	1.00
38667852--38667880	2	14.5	2	100	0	58	51	0	0	48	1.00
38667880--38667912	2	16.5	2	100	0	66	51	0	48	0	1.00
38668137--38668170	17	1.9	18	88	5	52	20	0	38	41	1.53
38671784--38671818	18	1.9	18	94	0	61	28	8	5	57	1.52
38675418--38675478	23	2.7	22	82	5	77	49	0	3	47	1.18
38675452--38675520	31	2.3	30	82	12	79	43	0	5	50	1.26
38699374--38699414	18	2.2	19	83	12	50	29	12	19	39	1.88
38700313--38700361	15	3.1	16	79	8	55	61	2	8	28	1.36
38700531--38700563	14	2.4	14	90	5	50	48	0	0	51	1.00
38700577--38700611	16	2.1	17	89	5	54	51	5	8	34	1.56
38702941--38702983	22	2.0	22	85	0	59	34	4	2	58	1.32
38702951--38703004	18	3.1	17	73	7	54	46	1	1	50	1.23
38704925--38705039	30	3.9	29	85	4	140	37	24	3	34	1.73
38705011--38705208	59	3.4	57	76	6	200	28	30	4	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38709878--38709971	47	2.0	47	100	0	188	23	6	23	46	1.75
38712022--38712072	24	2.1	24	100	0	102	56	7	11	23	1.61
38713722--38713764	9	4.8	9	80	11	52	62	2	0	34	1.08
38713734--38713769	18	2.0	18	100	0	72	66	0	0	33	0.92
38713725--38713770	11	4.8	10	82	15	53	63	2	0	34	1.07
38713731--38713774	18	2.5	17	89	7	70	61	0	0	38	0.96
38713718--38713769	27	2.0	26	85	7	70	65	1	0	32	1.04
38713962--38714001	21	1.9	21	85	10	55	47	7	10	35	1.65
38717927--38718019	45	2.1	45	100	0	186	41	19	19	19	1.90
38718173--38718239	34	1.9	34	82	14	84	38	14	13	32	1.86
38718505--38718548	3	15.3	3	81	9	56	0	29	0	70	0.88
38719717--38719766	21	2.4	21	86	6	66	42	0	12	46	1.41
38720685--38720752	23	2.9	24	80	8	77	54	2	1	41	1.24
38727641--38727666	13	2.0	13	100	0	52	38	0	15	46	1.46
38729557--38729660	37	2.7	38	74	5	93	32	26	18	22	1.97
38740511--38740555	23	2.0	23	100	0	90	35	26	20	17	1.95
38745312--38745372	31	2.0	31	86	0	86	42	9	11	36	1.74
38745750--38745929	59	3.0	61	72	16	144	27	11	9	51	1.68
38752468--38752909	224	2.0	224	93	0	760	44	9	15	30	1.79
38755057--38755479	220	1.9	221	89	1	652	28	19	23	28	1.98
38779094--38779289	9	21.0	9	67	15	80	62	1	5	31	1.24
38779468--38779536	20	3.5	20	80	7	86	34	0	2	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38779468--38779524	10	5.6	10	83	10	71	35	0	0	64	0.93
38779468--38779573	40	2.7	40	81	7	117	37	0	1	59	1.15
38780130--38780159	15	1.9	16	93	6	53	56	0	3	40	1.16
38780120--38780201	41	2.0	43	85	4	114	47	1	13	37	1.51
38787361--38787402	18	2.3	18	87	0	57	9	26	33	30	1.88
38806068--38807110	216	4.8	215	86	2	1274	28	25	14	31	1.95
38810829--38810936	29	3.7	29	75	14	112	25	13	13	47	1.80
38810864--38810965	31	3.4	31	76	15	122	24	16	12	46	1.82
38810832--38810965	60	2.2	60	94	0	232	25	15	13	45	1.83
38811362--38811408	24	2.0	25	87	8	71	76	2	8	12	1.09
38830126--38830155	15	2.0	15	100	0	60	40	6	13	40	1.71
38831401--38831549	62	2.4	62	93	1	246	30	18	26	24	1.98
38831403--38831516	31	3.7	31	76	14	128	30	16	27	25	1.97
38832916--38832971	25	2.3	25	82	11	64	23	5	3	67	1.27
38836540--38836574	18	1.9	18	88	0	52	48	2	11	37	1.54
38844322--38844389	6	11.5	6	78	9	50	26	25	0	48	1.51
38844341--38844389	18	2.7	18	87	6	73	22	28	0	48	1.50
38844343--38844385	12	3.5	13	87	9	56	23	30	0	46	1.52
38849577--38849648	31	2.4	29	80	11	76	25	6	2	65	1.31
38852247--38852307	31	2.0	31	90	0	95	44	8	8	39	1.64
38860481--38860512	16	2.1	15	94	5	55	71	0	0	28	0.86
38865604--38865628	2	12.5	2	100	0	50	0	0	52	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38867891--38867915	2	12.5	2	100	0	50	52	0	0	48	1.00
38872443--38872473	6	5.2	6	96	0	53	51	32	3	12	1.56
38875907--38875961	23	2.4	24	78	9	60	61	5	0	32	1.19
38877717--38877867	77	2.0	76	85	1	203	35	14	14	35	1.87
38878872--38878916	18	2.5	18	85	7	56	44	2	0	53	1.13
38888805--38888835	2	15.5	2	100	0	62	0	48	0	51	1.00
38897521--38897547	9	3.0	9	100	0	54	66	0	0	33	0.92
38903546--38903615	36	1.9	36	88	0	104	41	7	20	31	1.79
38903582--38903724	61	2.3	61	84	2	189	39	11	16	33	1.84
38905037--38905090	26	2.1	26	92	0	90	42	7	14	35	1.74
38909842--38909905	29	2.3	27	81	8	65	56	0	3	40	1.15
38916752--38916781	16	1.9	15	93	6	51	30	6	16	46	1.73
38932657--38932695	18	2.1	19	85	9	53	43	15	10	30	1.80
38932927--38932955	14	2.0	15	93	6	51	48	0	3	48	1.18
38950971--38951021	27	2.0	25	88	7	75	45	5	15	33	1.71
38956757--38956788	3	10.7	3	100	0	64	68	0	0	31	0.90
38957141--38957184	9	4.9	9	81	10	54	9	6	0	84	0.79
38957140--38957179	13	3.0	13	82	7	53	12	5	0	82	0.82
38957141--38957176	10	3.9	10	82	17	51	11	5	0	83	0.80
38957141--38957174	17	1.9	18	94	5	61	11	5	0	82	0.83
38966879--38966904	10	2.6	10	100	0	52	42	0	0	57	0.98
38968878--38968933	27	2.0	30	86	10	82	42	5	7	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38968909--38968958	22	2.4	22	83	6	68	42	6	4	48	1.46
38976374--38976418	18	2.5	18	88	0	63	6	0	17	75	1.01
38976386--38976428	18	2.4	18	88	0	59	4	2	23	69	1.18
38976422--38976541	12	9.9	12	69	10	57	8	3	18	70	1.27
38976428--38976499	21	3.5	20	83	9	83	9	2	15	72	1.22
38976428--38976505	40	1.9	42	86	5	115	8	3	16	70	1.28
38976454--38976510	21	2.8	20	73	19	55	12	3	14	70	1.30
38976671--38976748	39	2.0	39	82	7	95	28	0	7	64	1.21
38980764--38980797	17	2.0	17	94	0	59	44	5	0	50	1.26
38982527--38982583	19	2.9	19	80	17	64	40	0	5	54	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135