genome.fa.s2.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  134  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41410957--41411019	27	2.2	29	78	10	69	52	0	3	44	1.17
41418944--41419058	31	3.7	31	75	2	106	40	7	13	38	1.73
41427513--41427571	31	1.9	31	89	0	91	40	5	5	49	1.47
41428044--41428135	29	3.1	28	70	14	78	34	15	15	34	1.89
41428042--41428173	59	2.2	59	86	1	174	34	13	15	36	1.87
41441360--41441419	29	2.1	29	100	0	120	33	6	16	43	1.74
41442484--41442518	3	11.7	3	87	0	52	60	0	0	40	0.97
41442483--41442522	6	6.7	6	94	0	53	57	0	0	42	0.98
41442483--41442522	12	3.3	12	89	0	62	57	0	0	42	0.98
41448057--41448090	15	2.3	15	100	0	68	50	11	5	32	1.63
41453894--41454012	60	2.0	60	93	0	202	31	29	10	28	1.91
41454946--41454981	18	2.0	18	94	0	63	11	0	19	69	1.18
41466113--41466142	7	4.3	7	100	0	60	30	13	30	26	1.94
41466415--41466609	104	1.9	104	97	0	372	34	17	22	25	1.95
41466505--41466741	132	1.8	125	89	6	366	35	17	21	25	1.95
41473580--41473617	18	2.1	18	100	0	76	44	23	21	10	1.83
41475728--41475819	43	2.1	45	83	4	116	23	9	10	55	1.64
41481027--41481160	69	1.9	69	84	0	178	42	19	14	23	1.88
41485235--41485276	14	2.8	15	89	7	59	42	0	0	57	0.99
41494012--41494071	30	2.0	31	86	3	86	50	3	1	45	1.28
41505459--41505500	4	10.5	4	84	0	57	23	4	26	45	1.73
41509659--41509702	15	3.1	15	87	9	58	25	45	0	29	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41522533--41522573	18	2.4	17	80	11	57	63	0	4	31	1.15
41522539--41522573	18	1.9	18	94	0	61	62	0	5	31	1.18
41523073--41523115	18	2.5	17	77	7	50	72	4	0	23	1.04
41523600--41523657	30	1.9	30	89	0	89	12	0	39	48	1.40
41524284--41524335	18	2.9	18	75	16	54	25	1	3	69	1.16
41524810--41524881	29	2.5	29	72	20	69	54	1	0	44	1.08
41524818--41524857	21	1.9	21	89	0	62	60	0	0	40	0.97
41532475--41532549	39	1.9	39	88	0	114	57	5	1	36	1.30
41536795--41536834	13	3.1	13	88	0	53	37	22	7	32	1.82
41538866--41538948	31	2.6	30	79	9	94	32	10	3	53	1.53
41539724--41539757	18	1.9	17	88	5	50	35	0	2	61	1.11
41542793--41542859	29	2.3	30	87	7	102	49	2	2	44	1.32
41546453--41546486	16	2.1	16	88	0	50	35	17	17	29	1.93
41551457--41551520	28	2.3	28	100	0	128	32	25	21	20	1.97
41563315--41563354	21	2.0	20	85	5	53	32	0	0	67	0.91
41567765--41567823	2	29.5	2	100	0	118	49	0	0	50	1.00
41569847--41569878	15	2.0	17	88	11	50	3	28	12	56	1.51
41571614--41571672	30	1.9	32	86	13	88	49	0	0	50	1.00
41573221--41573335	52	2.2	53	82	7	135	40	5	16	37	1.71
41596133--41596269	31	4.6	30	71	12	93	41	15	10	32	1.82
41609885--41609910	13	2.0	13	100	0	52	38	7	0	53	1.30
41610905--41610959	28	1.9	29	85	3	76	49	10	1	38	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41612623--41612668	3	15.3	3	100	0	92	32	0	0	67	0.91
41615824--41615934	33	3.4	32	82	5	116	47	9	38	3	1.54
41615857--41615937	33	2.3	36	83	12	123	48	8	40	2	1.47
41615851--41615963	33	3.4	33	85	2	120	53	10	33	2	1.50
41619626--41619824	84	2.4	84	91	1	328	27	13	12	47	1.78
41620929--41620978	18	2.8	18	78	0	55	16	36	26	22	1.94
41623731--41623759	4	7.2	4	100	0	58	51	24	0	24	1.48
41626124--41626163	21	1.9	21	84	0	53	30	15	37	17	1.90
41630287--41630320	18	2.0	17	88	11	52	50	0	5	44	1.26
41634332--41634537	107	1.9	107	97	0	394	33	13	15	38	1.86
41643570--41643611	22	1.9	22	85	0	57	38	14	2	45	1.58
41653850--41654007	78	2.0	78	100	0	316	37	26	7	27	1.83
41669722--41669762	17	2.4	17	83	0	55	53	0	2	43	1.13
41670710--41670735	13	2.0	13	100	0	52	84	0	15	0	0.62
41672895--41672922	6	4.7	6	100	0	56	14	0	50	35	1.43
41673960--41673984	13	1.9	13	100	0	50	84	0	16	0	0.63
41676942--41677019	41	1.9	41	100	0	156	33	6	14	46	1.70
41677220--41677253	13	2.8	12	90	4	50	73	2	0	23	0.97
41691240--41691271	7	4.4	7	96	4	55	40	18	40	0	1.51
41691241--41691280	17	2.4	17	87	8	55	40	17	42	0	1.49
41691299--41691323	2	12.5	2	100	0	50	52	0	0	48	1.00
41693162--41693204	18	2.4	18	88	7	61	27	0	4	67	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41693145--41693223	43	1.9	40	87	7	113	29	0	3	67	1.08
41719601--41719658	23	2.5	24	77	8	66	46	6	0	46	1.29
41720801--41720861	25	2.4	25	100	0	122	47	4	9	37	1.58
41737971--41738011	6	6.8	6	97	0	64	39	0	60	0	0.96
41742363--41742401	20	1.9	21	89	5	62	43	10	10	35	1.73
41746338--41746366	6	4.8	6	100	0	58	51	0	34	13	1.42
41748894--41748944	24	2.1	24	100	0	102	45	7	11	35	1.70
41749659--41749720	31	2.0	31	100	0	124	38	29	3	29	1.73
41767598--41767627	6	5.0	6	100	0	60	0	66	0	33	0.92
41767835--41767877	8	5.4	8	78	10	52	69	0	0	30	0.88
41773288--41773346	21	2.7	23	81	7	68	38	6	5	49	1.52
41773303--41773346	23	2.0	21	86	8	61	40	4	2	52	1.34
41781771--41781823	2	26.5	2	100	0	106	49	0	0	50	1.00
41782844--41782876	6	5.5	6	100	0	66	33	51	0	15	1.43
41789104--41789164	23	2.7	22	82	5	68	29	3	0	67	1.07
41791022--41791073	16	3.2	16	73	10	52	13	21	1	63	1.39
41793415--41793457	20	2.0	22	91	8	72	55	6	0	37	1.27
41793487--41793516	15	2.0	15	93	0	51	30	0	6	63	1.20
41794549--41794593	19	2.4	18	85	3	54	51	6	2	40	1.41
41795018--41795058	21	2.0	22	85	9	59	56	0	19	24	1.42
41795016--41795064	21	2.3	22	75	13	57	55	0	20	24	1.44
41795678--41795745	31	2.2	32	82	15	90	44	19	13	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41797347--41797413	30	2.2	31	86	7	93	17	13	19	49	1.80
41802434--41802769	168	2.0	168	100	0	672	41	20	13	23	1.88
41805727--41805770	23	1.9	23	85	0	61	54	0	6	38	1.27
41806268--41806309	21	2.0	21	95	0	75	40	16	9	33	1.81
41807195--41807233	16	2.5	15	88	12	53	43	2	0	53	1.14
41816446--41816640	94	2.0	96	88	4	288	28	12	11	47	1.75
41826729--41827300	286	2.0	286	100	0	1144	43	13	15	28	1.84
41830278--41830302	2	12.5	2	100	0	50	48	0	52	0	1.00
41833986--41834012	4	6.8	4	100	0	54	74	0	0	25	0.83
41853504--41853535	16	2.0	16	100	0	64	50	18	18	12	1.78
41853449--41853526	23	3.2	24	79	15	81	46	19	25	8	1.79
41853477--41853665	23	8.5	22	75	12	163	43	21	23	11	1.85
41853534--41853666	48	2.8	46	82	8	144	39	22	25	12	1.88
41860904--41860929	9	2.9	9	100	0	52	34	0	0	65	0.93
41866679--41866707	2	15.0	2	92	7	51	48	0	0	51	1.00
41882159--41882196	3	12.7	3	100	0	76	65	0	34	0	0.93
41888532--41888604	31	2.3	31	85	4	101	49	4	2	43	1.36
41897975--41898438	229	2.0	229	100	0	928	28	17	21	31	1.96
41902744--41902816	31	2.3	31	85	4	101	49	4	2	43	1.36
41916766--41916838	31	2.3	31	85	4	101	49	4	2	43	1.36
41920780--41920805	3	8.7	3	100	0	52	34	0	30	34	1.58
41931958--41932021	10	6.6	10	71	7	51	65	0	4	29	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41931959--41932025	19	3.6	18	74	13	55	64	0	4	31	1.14
41932005--41932051	13	3.4	14	80	13	53	59	0	4	36	1.17
41932005--41932059	13	4.2	13	76	15	51	58	0	3	38	1.16
41932035--41932079	11	4.2	11	74	25	51	53	0	2	44	1.13
41932034--41932088	20	2.8	21	86	13	73	52	0	3	43	1.18
41932052--41932139	19	4.4	20	72	17	67	52	1	3	43	1.25
41932383--41932431	21	2.3	21	92	0	80	36	4	4	55	1.38
41932420--41932496	10	7.6	10	72	7	66	38	3	0	57	1.17
41932442--41932543	41	2.5	40	84	9	125	42	4	0	51	1.29
41932552--41932597	22	2.1	21	84	11	58	36	0	2	60	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135