genome.fa.s2.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  125  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37834819--37834844	12	2.2	12	100	0	52	38	0	0	61	0.96
37837625--37837667	23	1.9	23	90	4	70	11	16	2	69	1.28
37841775--37841839	30	2.2	30	97	0	121	23	3	15	58	1.51
37842174--37842218	23	2.0	23	82	8	56	51	2	2	44	1.26
37842186--37842228	23	1.9	23	90	4	70	53	0	2	44	1.13
37851187--37851379	96	2.0	96	100	0	386	33	20	23	22	1.97
37861822--37861876	25	2.2	25	81	9	60	45	0	1	52	1.11
37861828--37861876	25	1.9	25	84	12	64	44	0	2	53	1.12
37861801--37861881	43	1.9	43	80	14	98	48	1	1	49	1.17
37861851--37861881	16	1.9	16	93	0	53	51	0	0	48	1.00
37861820--37861898	43	1.9	41	82	10	99	44	0	3	51	1.19
37877099--37877168	28	2.6	27	82	8	88	34	24	10	31	1.88
37877204--37877263	22	2.7	22	76	0	66	31	31	18	18	1.95
37879228--37879339	58	1.9	58	81	3	136	50	14	7	27	1.68
37879287--37879398	61	1.9	58	81	5	134	51	12	7	28	1.65
37880723--37880763	15	2.6	16	84	7	57	36	2	0	60	1.10
37900945--37900991	25	1.9	24	95	4	85	53	8	0	38	1.32
37900948--37900989	13	3.3	13	75	18	52	54	9	0	35	1.33
37917409--37917581	79	2.2	79	96	2	319	35	10	9	44	1.72
37923715--37924262	278	2.0	278	94	0	961	25	23	19	31	1.98
37924558--37924664	55	1.9	55	98	0	205	25	23	16	34	1.95
37925159--37925210	19	2.6	19	82	11	59	50	0	5	44	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37925199--37925238	20	2.0	21	90	5	64	57	0	12	30	1.36
37925266--37925302	11	3.5	11	79	20	51	59	5	0	35	1.20
37925267--37925320	21	2.8	20	88	8	76	59	5	0	35	1.21
37925157--37925320	9	16.3	9	66	21	53	55	2	5	36	1.36
37925587--37925657	10	7.1	10	81	9	74	63	0	2	33	1.09
37925587--37925653	19	3.3	20	80	14	75	61	0	2	35	1.12
37925587--37925653	30	2.2	30	87	12	93	61	0	2	35	1.12
37926169--37926363	107	1.8	107	89	0	309	41	7	16	34	1.77
37927373--37927397	11	2.3	11	100	0	50	32	8	0	60	1.26
37927521--37927609	35	2.5	35	75	13	85	42	28	3	25	1.71
37932752--37932785	17	2.0	17	100	0	68	52	17	5	23	1.66
37942522--37942580	30	1.9	31	86	10	86	40	3	1	54	1.27
37948521--37948549	14	2.0	15	93	6	51	24	0	6	68	1.13
37950517--37950599	42	1.9	44	80	9	100	50	13	9	26	1.72
37953135--37953208	32	2.3	33	81	6	89	41	5	9	43	1.60
37958393--37958423	9	3.4	9	100	0	62	41	0	0	58	0.98
37960487--37960696	94	2.2	94	86	0	294	26	19	29	25	1.98
37964604--37964650	17	2.7	18	93	6	80	21	0	2	76	0.89
37964593--37964650	17	3.2	19	88	9	70	18	3	3	74	1.11
37964604--37964650	8	5.6	8	83	16	60	21	0	2	76	0.89
37964611--37964651	9	4.6	9	90	9	66	19	0	2	78	0.87
37966678--37966910	28	8.0	29	78	12	194	33	3	27	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37966658--37966873	57	3.8	57	81	8	210	31	3	28	36	1.73
37966655--37966872	116	1.9	116	83	5	289	32	3	27	36	1.75
37966681--37966902	88	2.6	85	85	7	288	33	2	27	36	1.69
37966680--37966902	57	3.9	57	81	8	231	33	2	27	36	1.70
37968700--37968778	17	4.6	17	80	1	86	48	1	1	49	1.17
37968700--37968778	11	6.8	12	74	8	74	48	1	1	49	1.17
37968700--37968778	6	13.7	6	73	7	74	48	1	1	49	1.17
37970229--37970270	21	2.0	21	81	13	50	33	0	2	64	1.07
37971118--37971149	16	2.0	16	93	0	55	46	0	0	53	1.00
37973574--37973621	11	4.4	11	75	0	51	62	8	8	20	1.49
37976750--37976912	77	2.2	73	84	8	204	47	7	14	31	1.71
37977504--37977554	18	2.9	16	83	11	57	68	0	1	29	1.00
37982924--37982962	20	1.9	21	94	5	71	46	0	2	51	1.14
37985592--37985636	12	3.5	13	90	9	58	42	37	20	0	1.52
38003728--38003812	40	2.1	40	84	2	107	37	18	28	15	1.91
38003785--38004081	41	7.3	41	86	3	368	29	20	31	17	1.96
38003785--38004064	122	2.3	122	87	3	395	29	20	32	17	1.96
38007849--38007905	23	2.5	23	97	0	96	49	1	0	49	1.11
38009070--38009100	16	1.9	16	93	0	53	48	9	6	35	1.62
38009270--38009315	20	2.3	20	88	3	67	39	0	8	52	1.33
38009281--38009319	20	2.0	20	100	0	78	35	0	7	56	1.28
38014476--38014529	20	2.7	20	85	0	63	27	11	31	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38015199--38015242	21	2.1	21	84	12	56	38	2	0	59	1.10
38015452--38015483	17	2.0	17	88	11	50	43	0	0	56	0.99
38017002--38017045	21	2.0	22	83	12	56	47	0	6	45	1.29
38017085--38017109	9	2.8	9	100	0	50	20	0	0	80	0.72
38022093--38022122	14	2.1	14	93	0	51	10	20	40	30	1.85
38029242--38029280	17	2.3	18	86	8	55	58	10	0	30	1.31
38033373--38033435	8	9.3	7	76	23	64	38	0	4	57	1.20
38033373--38033434	20	3.1	20	100	0	124	38	0	4	56	1.21
38033373--38033436	14	4.7	14	76	18	64	37	0	6	56	1.25
38033384--38033435	6	8.0	6	76	16	50	38	0	3	57	1.17
38040924--38040978	29	2.0	29	85	7	78	47	7	1	43	1.41
38042595--38042980	123	3.2	120	85	2	483	17	20	32	29	1.95
38057533--38057557	12	2.1	12	100	0	50	24	8	24	44	1.80
38065101--38065131	12	2.6	12	94	0	53	19	0	0	80	0.71
38068012--38068167	76	2.1	76	87	2	224	35	9	9	44	1.70
38074776--38074800	13	1.9	13	100	0	50	64	0	0	36	0.94
38075214--38075287	29	2.5	30	79	12	75	41	8	10	39	1.70
38082038--38082077	12	3.3	12	85	0	53	0	12	2	85	0.71
38082031--38082077	19	2.4	19	85	3	58	0	12	2	85	0.70
38093111--38093163	5	10.6	5	76	15	56	79	1	15	3	0.96
38093112--38093186	14	5.1	14	72	22	55	73	1	20	5	1.10
38093237--38093270	17	1.9	17	88	5	50	44	14	11	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38094929--38094982	27	2.1	25	93	6	90	40	0	38	20	1.53
38096036--38096076	20	2.3	19	80	19	52	68	2	0	29	1.03
38112967--38113006	20	2.0	20	90	0	62	47	7	7	37	1.60
38123348--38123390	17	2.6	16	85	10	59	34	0	0	65	0.93
38123881--38123933	22	2.4	23	75	6	56	47	0	1	50	1.12
38133191--38133235	22	2.0	23	86	8	65	48	2	6	42	1.41
38143353--38143411	31	1.9	31	85	0	82	35	10	10	44	1.72
38152523--38152568	23	2.0	23	82	0	56	50	2	2	45	1.26
38154358--38154419	30	2.1	29	87	3	88	51	1	9	37	1.45
38154976--38155017	21	2.0	22	85	4	59	47	2	45	4	1.36
38155435--38156065	210	3.0	210	95	0	1138	36	12	31	19	1.89
38170106--38170152	6	7.8	6	79	9	51	17	46	2	34	1.59
38170106--38170155	24	2.1	24	84	0	64	18	46	2	34	1.60
38178187--38178227	18	2.4	17	83	4	55	34	17	7	41	1.77
38182202--38182291	22	4.0	22	92	1	135	43	24	21	11	1.85
38191213--38191327	57	2.0	57	100	0	230	27	19	15	37	1.92
38196977--38197017	15	2.5	17	80	11	59	65	0	0	34	0.93
38197209--38197254	25	1.9	25	86	8	69	36	4	0	58	1.18
38199800--38199842	4	10.8	4	100	0	86	23	0	51	25	1.49
38199975--38200039	29	2.2	29	84	13	80	44	4	4	46	1.44
38205636--38205661	6	4.3	6	100	0	52	30	0	69	0	0.89
38223676--38223731	28	2.0	28	86	6	78	23	7	8	60	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38226440--38226477	18	2.1	19	85	5	51	39	7	13	39	1.73
38226959--38227029	32	2.2	32	84	0	88	46	9	14	29	1.76
38227385--38227429	16	2.8	16	86	3	63	51	8	6	33	1.59
38232628--38232697	29	2.4	29	83	7	88	28	7	12	51	1.66
38233760--38233802	20	2.2	20	86	0	59	34	6	23	34	1.82
38233819--38233862	16	2.7	15	83	13	52	59	0	2	38	1.10
38234188--38234229	21	2.0	21	90	0	66	42	0	0	57	0.99
38234184--38234292	9	11.7	9	68	16	53	41	1	1	55	1.21
38234260--38234284	11	2.3	11	100	0	50	32	0	8	60	1.26
38236594--38236635	16	2.7	15	78	7	57	50	2	0	47	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135