genome.fa.s2.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  108  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32891606--32891657	15	3.4	15	72	2	50	17	11	9	61	1.55
32891607--32891676	29	2.4	30	83	7	81	21	15	8	54	1.68
32891749--32891786	16	2.4	16	86	8	51	26	0	0	73	0.83
32914195--32914241	20	2.3	20	96	0	85	31	2	17	48	1.58
32922240--32922357	28	4.2	27	71	17	89	27	22	19	31	1.98
32922235--32922363	57	2.3	56	84	5	163	30	20	20	29	1.97
32924129--32924181	23	2.3	24	75	12	58	56	0	0	43	0.99
32924464--32924540	39	2.0	39	94	0	136	36	18	15	29	1.92
32930834--32930930	17	5.8	16	84	8	106	39	2	3	55	1.27
32930834--32930932	34	2.9	34	83	8	130	39	2	3	55	1.27
32930852--32930946	6	16.0	6	73	17	74	43	1	3	52	1.24
32930852--32930932	11	7.1	11	69	10	56	41	1	2	54	1.21
32931615--32931652	16	2.4	16	86	4	51	57	0	0	42	0.98
32932756--32932856	30	3.5	26	69	23	69	32	28	2	35	1.73
32932783--32932935	29	5.2	29	67	21	86	32	28	4	34	1.78
32932753--32932994	59	4.1	59	85	2	324	31	29	3	34	1.75
32932756--32932907	29	5.2	28	71	20	105	32	28	3	34	1.74
32932953--32933032	38	2.1	38	83	0	97	32	27	7	32	1.85
32933028--32933091	29	2.2	29	91	0	101	32	32	9	25	1.88
32945143--32945902	76	10.0	76	95	1	1325	33	16	18	32	1.92
32946189--32946240	17	3.1	17	85	0	77	36	0	5	57	1.23
32946947--32946988	16	2.7	15	85	7	57	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32948048--32948336	29	9.8	28	67	21	153	31	31	4	32	1.78
32948045--32948346	59	5.1	59	89	2	444	31	31	4	32	1.78
32948310--32948384	38	2.0	38	86	0	105	29	28	9	33	1.88
32948353--32948443	29	3.1	28	72	24	73	29	29	12	28	1.93
32949807--32949839	15	2.1	17	88	11	52	51	0	0	48	1.00
32950663--32950755	20	4.8	18	75	18	80	53	4	1	40	1.27
32950674--32950758	19	4.3	19	73	16	66	56	3	0	40	1.16
32950662--32950803	41	3.7	37	72	15	128	52	3	0	43	1.23
32950730--32950767	17	2.2	17	86	9	51	44	5	0	50	1.24
32950675--32950787	19	5.8	19	68	10	57	50	3	0	46	1.18
32950669--32950810	39	3.7	38	75	10	119	50	3	0	45	1.18
32955110--32955360	68	3.7	68	88	1	351	25	21	19	33	1.97
32957566--32957618	18	3.1	18	86	10	67	54	0	0	45	0.99
32958275--32958331	18	3.2	18	74	16	55	57	5	3	33	1.38
32978046--32978072	8	3.4	8	100	0	54	77	0	0	22	0.76
32983405--32983465	24	2.5	24	86	0	86	26	13	9	50	1.72
32985333--32985412	31	2.6	31	84	7	94	41	3	1	53	1.27
32985342--32985412	31	2.4	29	88	4	97	39	4	0	56	1.19
32985340--32985410	11	6.5	11	73	15	58	39	4	0	56	1.19
32985389--32985423	17	2.1	17	88	0	52	45	2	0	51	1.16
32985466--32985533	32	2.1	32	94	0	118	54	19	13	13	1.71
32985462--32985539	32	2.5	31	87	6	113	48	21	15	14	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32987082--32987421	162	2.1	163	95	1	612	25	16	12	45	1.83
32987553--32987749	58	3.4	59	90	4	292	32	29	4	33	1.76
32987539--32987711	29	5.9	29	71	10	138	32	28	4	34	1.78
32987603--32987742	30	4.8	28	69	21	90	33	29	2	35	1.70
32999865--33000710	68	12.0	69	89	5	1008	33	16	19	30	1.94
33000349--33000698	38	9.4	38	69	19	227	34	14	18	33	1.90
33001009--33001079	31	2.4	29	88	4	97	39	4	0	56	1.19
33001007--33001077	11	6.5	11	73	15	58	39	4	0	56	1.19
33001056--33001090	17	2.1	17	88	0	52	45	2	0	51	1.16
33001129--33001205	31	2.5	31	97	2	147	45	23	18	12	1.84
33001152--33001216	18	3.9	18	73	19	77	44	23	20	12	1.84
33002705--33003015	162	1.9	162	97	0	595	25	16	12	45	1.82
33003147--33003343	30	6.7	29	72	16	140	32	27	4	35	1.77
33003174--33003371	59	3.4	59	88	2	292	31	29	4	34	1.78
33003174--33003409	117	2.0	118	81	4	280	29	30	6	34	1.82
33005462--33005556	24	4.0	24	95	0	163	53	7	12	26	1.64
33005446--33005556	48	2.3	48	88	0	168	51	8	13	27	1.69
33006092--33006137	22	2.1	22	88	8	67	43	0	23	32	1.54
33008580--33008674	30	3.2	30	64	8	77	45	11	5	37	1.63
33008707--33008757	16	3.2	16	73	15	52	33	0	5	60	1.21
33019444--33019476	2	16.5	2	100	0	66	48	0	0	51	1.00
33025890--33025920	7	4.4	7	100	0	62	12	12	58	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33031645--33031749	52	2.0	52	94	0	183	37	18	8	36	1.81
33032421--33032466	23	2.2	19	85	14	56	34	2	4	58	1.30
33038782--33038850	27	2.4	27	81	11	68	49	23	2	24	1.64
33039054--33039086	16	1.9	18	88	11	52	39	0	0	60	0.97
33039405--33039828	223	1.9	226	85	4	599	38	7	7	46	1.60
33044615--33044883	30	9.1	27	70	24	131	35	2	29	32	1.70
33044574--33044925	59	6.0	59	85	3	433	34	3	29	32	1.76
33044615--33044925	117	2.6	117	88	2	446	35	2	28	33	1.71
33046835--33046921	11	8.0	11	75	20	60	57	0	2	40	1.11
33046834--33046928	6	16.0	6	72	17	74	55	1	2	41	1.18
33046834--33046921	17	5.4	17	75	15	78	56	0	2	40	1.11
33046832--33046934	29	3.5	29	84	7	118	57	0	1	39	1.16
33047193--33047721	76	7.0	76	82	8	421	33	17	15	33	1.91
33047276--33047517	115	2.1	114	92	1	403	32	17	14	35	1.90
33047203--33047726	191	2.8	191	94	2	914	33	17	15	33	1.91
33047467--33047712	115	2.1	115	96	0	449	34	17	13	34	1.90
33047649--33047821	92	1.9	90	89	2	265	28	17	17	35	1.93
33055193--33055261	34	2.0	34	100	0	138	20	24	17	37	1.93
33059936--33060005	28	2.5	28	86	4	88	30	10	27	32	1.89
33059992--33060168	88	2.0	90	89	2	277	35	2	28	33	1.72
33059992--33060123	59	2.2	58	89	7	196	35	3	27	34	1.72
33059992--33060183	29	6.5	28	71	21	126	34	3	27	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33060091--33060270	58	3.1	58	83	5	184	32	2	27	37	1.71
33060548--33060611	32	2.0	32	81	9	76	57	4	15	21	1.56
33062149--33062235	11	8.0	11	74	22	53	56	0	2	41	1.12
33062148--33062242	6	16.0	6	70	21	67	54	1	2	42	1.19
33062146--33062248	29	3.5	29	81	7	109	56	0	1	40	1.17
33062150--33062235	23	4.0	22	70	19	56	56	0	2	40	1.12
33063092--33063150	9	6.0	10	75	13	52	61	1	1	35	1.16
33072574--33072610	11	2.9	13	84	15	51	56	2	0	40	1.13
33074511--33074562	21	2.4	21	78	15	61	59	0	3	36	1.16
33079142--33079348	30	7.0	29	70	10	159	34	4	29	31	1.78
33079107--33079336	30	7.8	30	69	12	154	34	4	29	31	1.78
33079107--33079348	119	2.1	117	91	3	387	33	4	30	30	1.79
33079107--33079348	59	4.1	59	89	1	351	33	4	30	30	1.79
33079430--33079545	30	3.9	29	85	5	144	34	4	24	37	1.75
33079636--33079940	162	1.9	161	87	3	452	45	12	17	24	1.83
33079675--33080024	162	2.2	162	80	5	386	48	11	17	22	1.79
33081403--33081436	14	2.4	14	95	0	59	14	17	32	35	1.91
33081466--33081572	48	2.2	48	81	6	119	48	1	0	48	1.18
33081495--33081557	31	2.0	31	87	0	90	50	3	0	46	1.17
33081465--33081572	6	18.0	6	75	14	89	48	1	0	49	1.18
33081468--33081563	42	2.2	43	80	15	110	47	2	1	48	1.20
33081876--33082657	68	11.4	68	91	1	1224	27	19	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33081876--33082657	137	5.7	136	92	1	1240	27	19	18	34	1.95
33081876--33082653	205	3.8	205	96	0	1317	27	19	18	34	1.95
33094520--33094674	57	2.7	55	81	13	170	36	6	29	27	1.82
33094520--33094663	59	2.5	57	83	10	168	36	6	29	27	1.81
33094771--33094901	57	2.3	56	85	10	169	34	3	25	36	1.74
33094805--33094901	28	3.4	28	91	2	158	36	4	22	37	1.74
33095014--33095305	158	1.8	160	86	4	421	46	12	16	24	1.81
33095014--33095316	159	1.9	159	85	4	414	47	12	15	24	1.80
33102364--33102616	30	8.5	30	69	16	134	36	4	26	32	1.77
33102330--33102646	59	5.4	59	86	3	417	35	5	27	32	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135