genome.fa.s2.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  96  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29844718--29844869	79	1.9	79	82	0	187	28	16	23	31	1.96
29845000--29845109	50	2.2	50	93	0	184	16	26	23	33	1.95
29845000--29845131	50	2.6	49	86	4	167	17	26	21	34	1.95
29866574--29866816	30	8.1	30	76	4	186	37	4	21	36	1.75
29866574--29866811	90	2.7	89	83	5	259	37	5	20	36	1.75
29866778--29866845	30	2.2	31	86	5	102	35	4	25	35	1.76
29867862--29867898	9	3.8	10	83	16	51	75	0	0	24	0.80
29870909--29871084	88	2.0	88	90	0	280	26	20	19	33	1.97
29889020--29889089	28	2.5	29	81	9	74	67	0	12	20	1.23
29889152--29889176	2	12.5	2	100	0	50	52	0	0	48	1.00
29891763--29891814	25	2.1	25	85	7	70	42	0	3	53	1.19
29893392--29893459	31	2.2	30	85	10	93	44	14	5	35	1.70
29893981--29894044	30	2.1	31	83	11	80	64	6	1	28	1.27
29894167--29894217	24	2.1	25	81	3	59	62	1	13	21	1.40
29901705--29901945	30	8.1	30	79	10	156	36	26	3	33	1.74
29901740--29902038	29	10.1	29	76	12	200	36	26	2	33	1.71
29901733--29901908	88	2.0	89	84	3	230	37	26	3	31	1.75
29911487--29911570	6	13.3	6	78	16	73	78	2	19	0	0.86
29911481--29911584	7	14.1	7	72	14	68	76	1	20	0	0.93
29911482--29911572	31	3.1	29	79	16	100	79	2	18	0	0.84
29911482--29911583	44	2.3	42	82	12	118	78	1	18	0	0.90
29912540--29912789	99	2.5	99	83	1	295	33	16	31	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29913178--29913576	39	10.3	39	74	2	255	26	30	16	26	1.97
29913169--29913541	78	4.8	78	82	2	428	25	30	17	26	1.97
29913097--29913344	117	2.1	117	78	2	257	22	31	18	27	1.97
29914189--29914247	26	2.2	25	80	16	66	64	6	8	20	1.44
29928428--29928457	15	2.0	15	93	0	51	43	13	16	26	1.85
29929306--29929392	30	2.8	30	73	13	79	36	0	4	58	1.19
29932613--29932638	9	2.9	9	100	0	52	57	0	0	42	0.98
29935826--29935867	19	2.3	19	87	4	59	73	2	0	23	0.94
29937181--29937211	16	1.9	16	93	0	53	48	0	9	41	1.36
29937199--29937230	15	2.2	14	94	5	55	56	0	0	43	0.99
29939299--29939381	40	2.1	39	88	2	121	34	12	15	37	1.85
29939419--29939460	9	4.7	9	80	11	50	42	19	9	28	1.82
29941929--29942288	194	1.9	195	86	0	515	28	17	27	26	1.98
29946638--29946692	22	2.5	22	87	0	74	20	7	9	63	1.47
29946781--29946810	15	2.0	15	93	0	51	43	0	0	56	0.99
29953575--29953617	13	3.3	13	84	15	54	0	32	16	51	1.45
29953889--29953934	21	2.1	22	84	11	60	0	32	0	67	0.91
29968612--29968643	9	3.6	9	95	0	55	46	25	0	28	1.53
29968886--29968954	36	1.9	36	88	5	104	33	13	1	52	1.49
29972558--29972630	36	2.0	36	100	0	146	30	16	13	39	1.87
29974834--29974885	22	2.3	23	93	3	88	48	9	28	13	1.74
29978121--29978160	16	2.4	17	87	4	55	52	5	32	10	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29989536--29989596	26	2.2	28	77	11	72	49	3	8	39	1.49
29989918--29989984	19	3.5	19	82	10	66	55	5	0	38	1.25
29989918--29989975	18	3.1	18	82	7	71	53	5	0	41	1.23
29989972--29990062	38	2.3	40	83	5	107	63	4	0	31	1.14
29991263--29991288	5	5.2	5	100	0	52	61	19	0	19	1.35
29992491--29992533	17	2.5	17	88	0	59	20	18	25	34	1.96
29995213--29995237	13	1.9	13	100	0	50	0	24	8	68	1.16
30003300--30003340	20	2.0	20	85	0	55	48	9	17	24	1.76
30004657--30004689	15	2.1	16	88	5	50	60	3	12	24	1.46
30010252--30010529	81	3.6	76	81	7	335	46	10	12	30	1.75
30017604--30017633	11	2.7	11	100	0	60	60	0	0	40	0.97
30018762--30018813	22	2.3	22	83	9	61	55	3	1	38	1.29
30026160--30026379	41	5.3	41	80	2	192	24	25	14	35	1.93
30026160--30026383	82	2.7	81	78	5	234	24	25	13	36	1.93
30026257--30026320	21	3.1	21	64	28	55	20	26	14	39	1.90
30031847--30032090	122	2.0	122	96	0	452	27	18	30	23	1.98
30032660--30032713	21	2.6	21	85	5	74	31	25	11	31	1.91
30032781--30032828	24	2.0	24	91	0	78	39	22	10	27	1.87
30033348--30033436	40	2.2	40	84	6	108	32	24	10	32	1.89
30033369--30033451	40	2.1	39	88	6	123	32	25	9	32	1.88
30035956--30036175	23	9.6	23	87	0	278	34	6	13	46	1.68
30035966--30036171	69	3.0	69	91	0	340	33	6	13	46	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30036281--30036367	36	2.4	36	96	0	156	25	16	24	34	1.95
30037587--30037894	58	5.3	58	84	3	377	35	2	28	32	1.71
30037616--30037894	59	4.7	59	86	4	368	35	2	29	32	1.70
30037858--30038071	30	7.2	30	80	4	204	37	3	21	37	1.70
30037581--30037951	117	3.2	117	81	6	414	34	2	29	33	1.73
30037858--30038071	60	3.6	59	81	5	245	37	3	21	37	1.70
30039252--30039310	12	5.5	11	80	12	54	35	3	1	59	1.24
30039914--30039971	17	3.5	17	76	11	66	53	3	1	41	1.28
30046011--30046065	21	2.7	21	77	8	60	32	25	16	25	1.96
30046726--30046776	24	2.1	24	86	13	70	25	23	21	29	1.99
30047104--30047156	21	2.5	21	85	11	65	32	22	13	32	1.92
30054236--30054285	21	2.4	20	81	15	57	32	26	14	28	1.94
30067901--30068118	79	2.8	78	82	4	242	31	15	11	41	1.83
30068577--30068624	19	2.6	19	86	3	62	39	10	16	33	1.83
30068597--30068719	31	3.9	31	80	2	147	38	6	17	37	1.76
30068597--30068720	63	2.0	62	85	1	167	37	7	17	37	1.78
30073928--30073969	18	2.3	18	91	4	66	0	33	0	66	0.92
30073928--30073968	9	4.4	10	79	14	52	0	31	0	68	0.90
30081002--30081046	18	2.6	17	76	16	56	71	4	8	15	1.28
30080986--30081317	163	2.0	165	91	1	542	50	18	13	18	1.78
30085533--30085557	12	2.1	12	100	0	50	40	0	0	60	0.97
30088479--30088558	42	1.9	42	94	0	142	26	22	8	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30090631--30090662	14	2.3	14	100	0	64	25	12	34	28	1.92
30090693--30090882	49	3.9	49	76	2	166	35	14	22	27	1.93
30090694--30090879	98	1.9	98	84	0	246	35	14	22	27	1.93
30091178--30091251	37	2.0	37	97	0	139	52	5	9	32	1.56
30098749--30098812	19	3.3	19	77	16	60	37	3	1	57	1.24
30098756--30098816	19	3.2	20	79	13	65	34	1	1	62	1.15
30099423--30099482	30	2.0	31	86	3	86	35	11	13	40	1.81
30103372--30103407	17	2.1	18	94	5	65	33	2	22	41	1.68
30104186--30104215	13	2.3	13	94	0	51	60	3	0	36	1.14
30104540--30104601	31	2.0	31	100	0	124	22	16	19	41	1.89
30104596--30105506	76	12.0	76	92	0	1364	32	17	16	33	1.92
30104596--30105499	226	4.0	226	92	2	1425	33	16	16	33	1.92
30116901--30116997	6	16.2	6	73	16	85	55	1	2	41	1.18
30116910--30116961	11	4.9	11	72	9	54	55	0	3	40	1.18
30116904--30116984	17	4.9	17	76	13	89	56	0	2	40	1.12
30116968--30116997	13	2.3	13	94	0	51	60	3	0	36	1.14
30119951--30119977	14	1.9	14	100	0	54	22	7	18	51	1.70
30123774--30123927	28	5.4	28	76	6	139	29	24	16	30	1.96
30123774--30123937	57	2.9	54	75	8	157	28	23	15	32	1.96
30127291--30127345	20	2.8	20	82	0	74	18	20	21	40	1.92
30131438--30131472	16	2.3	15	86	13	54	54	2	5	37	1.39
30131914--30131954	3	13.7	3	94	0	73	68	2	0	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30132742--30132824	30	2.8	31	73	14	86	56	0	6	37	1.24
30133346--30133378	12	2.7	12	95	4	57	57	0	0	42	0.98
30134130--30134161	14	2.2	15	94	5	57	62	6	6	25	1.42
30142357--30142384	14	2.0	14	100	0	56	42	0	14	42	1.45
30162721--30162761	22	1.9	22	90	5	66	17	19	4	58	1.56
30165081--30165119	19	2.1	19	85	9	53	2	20	0	76	0.90
30166152--30166191	18	2.2	18	86	0	53	0	32	2	65	1.06
30182024--30182049	13	2.0	13	100	0	52	30	15	7	46	1.74
30187985--30188129	39	3.7	39	81	3	123	41	18	13	26	1.87
30188002--30188129	39	3.3	39	83	0	139	40	17	14	27	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135