genome.fa.s2.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  25  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6646241--6646290	5	9.6	5	76	23	50	80	2	18	0	0.82
6646241--6646290	16	3.2	16	81	18	61	80	2	18	0	0.82
6648189--6648611	49	8.6	49	79	5	379	34	16	29	20	1.94
6648231--6648611	99	3.9	98	79	9	398	34	16	28	20	1.95
6648224--6648620	148	2.7	147	84	3	492	34	17	28	19	1.95
6648189--6648617	99	4.3	98	78	9	379	34	16	29	19	1.94
6648288--6648657	49	7.5	49	75	7	273	35	16	28	20	1.94
6648454--6648673	99	2.2	99	79	3	228	36	18	27	18	1.94
6648682--6649127	49	9.1	49	68	5	202	34	17	26	20	1.95
6648632--6649171	98	5.5	98	83	0	576	35	16	26	21	1.94
6649415--6649490	40	1.9	40	88	0	116	28	32	17	21	1.95
6649975--6650016	17	2.5	17	84	3	50	54	4	0	40	1.21
6650062--6650130	35	2.0	35	83	11	88	46	39	1	13	1.52
6651679--6651751	29	2.5	30	80	8	89	30	10	23	35	1.89
6651722--6651978	59	4.4	58	79	10	240	35	2	25	36	1.70
6651758--6652008	29	8.5	30	85	6	266	36	1	24	37	1.65
6651759--6652027	59	4.6	56	80	9	227	36	1	24	36	1.67
6651759--6652022	30	8.9	29	84	7	243	35	1	25	36	1.67
6653831--6653889	10	5.9	10	74	21	61	54	5	0	40	1.23
6653851--6653891	17	2.4	17	92	8	66	51	2	0	46	1.14
6654965--6655174	100	2.2	98	84	5	282	26	14	2	56	1.51
6654955--6655243	100	2.9	95	78	9	271	25	14	2	57	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6654992--6655239	99	2.5	96	77	10	239	24	14	2	58	1.48
6655320--6655373	18	2.7	20	76	23	60	25	7	0	66	1.17
6657250--6657341	46	2.0	46	95	0	166	36	10	29	22	1.88
6659497--6659628	30	4.5	30	77	9	137	39	21	2	36	1.66
6659674--6659753	29	2.8	29	76	3	81	35	27	6	31	1.82
6659753--6659846	29	3.2	28	74	18	77	36	21	5	37	1.76
6670616--6671148	39	13.7	39	69	8	226	24	29	19	26	1.98
6670612--6671151	78	6.9	77	78	4	512	24	29	19	26	1.98
6670614--6671353	156	4.9	155	78	8	651	23	30	19	25	1.98
6671095--6671211	60	2.0	59	91	1	189	23	32	23	20	1.98
6671154--6671356	39	5.2	39	72	9	162	23	33	19	23	1.97
6671179--6671386	39	5.3	39	69	7	154	24	33	17	25	1.97
6671154--6671373	78	2.8	78	86	1	298	24	32	19	23	1.97
6674401--6674545	70	2.1	71	90	1	229	39	15	15	28	1.89
6674701--6674790	47	1.9	47	93	2	155	32	0	18	48	1.49
6675854--6675960	51	2.1	51	87	6	155	14	6	52	26	1.66
6682594--6682635	17	2.4	18	80	15	52	23	23	0	52	1.47
6683666--6683700	18	1.9	18	88	0	52	42	0	0	57	0.99
6684796--6684825	3	10.0	3	100	0	60	66	0	33	0	0.92
6687137--6687904	39	19.8	38	68	11	191	24	30	20	25	1.98
6687138--6687360	117	1.9	117	84	0	302	23	27	21	27	1.99
6687217--6687954	155	4.8	155	83	2	815	24	31	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6687256--6687943	39	17.7	39	69	9	368	24	31	19	24	1.98
6687217--6687965	78	9.6	77	80	4	693	24	30	19	24	1.98
6689869--6690084	30	7.2	31	80	7	225	36	23	3	37	1.71
6689869--6690209	60	5.8	61	74	12	225	36	26	3	34	1.74
6689869--6690084	89	2.4	90	79	8	244	36	23	3	37	1.71
6689985--6690112	30	4.2	31	83	6	131	35	32	1	30	1.67
6689869--6690115	119	2.1	120	80	8	272	36	25	2	35	1.71
6690121--6690183	28	2.2	28	85	2	90	33	33	6	26	1.82
6691562--6691706	70	2.1	71	93	1	247	40	15	15	27	1.88
6691861--6691950	47	1.9	46	91	6	146	32	1	17	48	1.55
6693013--6693280	45	6.2	45	74	15	190	15	6	47	30	1.72
6693067--6693182	36	3.1	36	68	16	92	18	7	44	29	1.77
6693101--6693347	90	2.8	86	67	15	189	17	6	45	30	1.72
6697551--6697828	45	6.3	43	68	18	167	13	7	47	30	1.72
6697560--6697689	39	3.2	39	78	12	134	14	8	45	31	1.75
6697701--6697830	39	3.2	39	78	12	134	14	8	45	31	1.75
6697549--6697840	141	2.1	141	100	0	584	14	7	48	30	1.71
6702487--6702581	34	2.8	34	82	3	93	42	17	12	27	1.86
6705282--6705406	30	4.1	30	90	3	162	35	23	4	36	1.76
6705560--6705619	30	2.0	30	83	9	77	21	16	8	53	1.69
6708433--6708462	14	2.1	15	93	6	53	40	0	13	46	1.43
6710716--6710814	23	4.3	22	70	13	65	50	1	1	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6711447--6711509	33	2.0	30	82	14	74	41	14	4	39	1.67
6712374--6712663	48	6.1	45	83	8	328	11	6	50	31	1.64
6712374--6713063	51	14.5	48	79	15	677	14	6	48	30	1.69
6712374--6713063	96	7.2	96	81	10	785	14	6	48	30	1.69
6712743--6713012	138	2.0	138	92	0	450	15	5	47	31	1.69
6712374--6713122	189	4.0	185	88	4	995	14	6	48	30	1.69
6713837--6713866	7	4.1	7	95	4	51	66	0	0	33	0.92
6717752--6717944	86	2.3	85	80	5	210	25	25	11	36	1.90
6717752--6717944	42	4.5	43	78	6	196	25	25	11	36	1.90
6719856--6720026	62	2.8	61	90	1	243	34	19	22	23	1.96
6721194--6721266	29	2.5	29	76	12	78	20	21	35	21	1.96
6723171--6723238	31	2.2	32	81	7	86	30	30	7	30	1.85
6723477--6723501	10	2.5	10	100	0	50	84	0	0	16	0.63
6723674--6723745	16	4.5	16	85	0	99	38	6	29	25	1.82
6723727--6723821	44	2.1	46	82	7	115	32	5	26	35	1.79
6723917--6724067	58	2.6	59	87	6	218	54	1	0	43	1.13
6727085--6727144	17	3.2	18	74	13	50	25	5	3	66	1.27
6727075--6727135	19	3.3	18	75	11	52	27	4	3	63	1.30
6727083--6727174	18	5.1	18	72	11	55	26	4	5	64	1.34
6729241--6729319	31	2.6	31	70	20	76	37	15	2	44	1.60
6732301--6732341	14	3.0	14	82	17	59	48	0	0	51	1.00
6732302--6732350	13	3.8	13	80	19	59	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6739217--6739264	24	2.0	24	91	0	78	25	12	12	50	1.75
6739380--6739454	23	3.2	23	80	12	82	34	12	12	41	1.79
6741015--6741054	13	3.3	12	86	10	55	25	2	0	72	0.97
6740989--6741031	20	2.2	20	83	8	52	18	2	2	76	1.00
6743082--6743123	18	2.5	16	88	7	57	16	4	0	78	0.91
6743082--6743124	5	7.8	5	90	10	50	18	4	0	76	0.95
6744058--6744101	21	2.1	21	86	0	61	75	0	11	13	1.06
6745136--6745181	25	1.9	23	86	8	65	36	2	6	54	1.39
6748209--6748266	30	1.9	30	83	16	75	55	10	13	20	1.68
6748359--6748459	28	3.5	28	72	20	91	36	4	25	32	1.78
6748347--6748519	59	2.9	59	91	1	267	35	5	27	31	1.79
6748358--6748518	29	5.5	29	68	24	99	36	4	27	32	1.77
6748588--6748916	160	2.0	161	90	4	522	43	15	17	24	1.87
6749673--6749716	15	2.8	15	86	6	52	47	0	0	52	1.00
6750509--6750590	6	13.8	6	76	12	80	56	1	2	40	1.20
6750516--6750591	11	7.0	11	75	14	77	57	0	2	39	1.12
6750510--6750573	17	3.9	17	84	12	89	56	1	3	39	1.25
6750524--6750551	14	2.0	14	100	0	56	57	0	7	35	1.26
6750510--6750568	31	1.9	31	92	0	100	55	1	3	38	1.26
6750510--6750591	17	5.0	17	80	12	82	57	1	2	39	1.20
6751088--6751164	19	4.1	19	80	9	79	62	2	0	35	1.09
6751108--6751171	19	3.3	19	84	8	76	57	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6756180--6756225	25	1.9	23	86	8	65	36	4	4	54	1.40
6757169--6757206	20	1.9	20	84	10	51	65	0	5	28	1.14
6761191--6761326	30	4.5	30	77	9	116	41	2	20	35	1.65
6763354--6763524	48	3.6	48	91	1	263	22	25	15	36	1.93
6763564--6763729	85	2.0	84	84	3	217	25	19	15	39	1.91
6763450--6764108	207	3.2	207	85	3	853	22	20	17	39	1.93
6763817--6763888	37	1.9	37	85	0	99	22	22	22	33	1.97
6763770--6763935	85	2.0	84	80	1	188	20	24	19	34	1.96
6763223--6764100	414	2.1	419	82	4	1056	22	21	17	39	1.93
6764122--6764377	81	3.1	81	77	7	241	28	17	26	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135