genome.fa.s2.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  78  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23762601--23762702	30	3.4	30	77	8	109	39	25	12	22	1.90
23762933--23762999	30	2.2	30	89	0	98	44	23	5	25	1.76
23765273--23765312	15	2.6	16	81	18	50	2	22	2	72	1.09
23765262--23765313	16	3.3	16	75	5	52	1	21	3	73	1.10
23765886--23765924	17	2.3	17	86	8	53	58	12	10	17	1.61
23781698--23781762	27	2.4	27	82	10	80	38	16	23	21	1.93
23781716--23781767	14	3.8	14	74	5	52	30	17	30	21	1.96
23781715--23781767	27	2.0	27	92	0	88	30	16	32	20	1.95
23783755--23783783	15	1.9	15	100	0	58	37	0	0	62	0.96
23803533--23803753	81	2.7	82	82	2	257	29	25	17	27	1.97
23808135--23808351	81	2.7	81	77	5	215	30	26	14	28	1.95
23814053--23814101	21	2.3	21	78	0	62	14	6	4	75	1.14
23815664--23815696	16	2.1	16	88	5	50	15	6	3	75	1.11
23816069--23816115	24	2.0	24	82	0	58	48	0	6	44	1.28
23818113--23818142	15	1.9	16	93	6	53	20	20	6	53	1.67
23844571--23844595	10	2.5	10	100	0	50	36	0	8	56	1.29
23844710--23844749	20	2.0	21	85	5	55	52	5	2	40	1.37
23848619--23848652	6	5.7	6	96	0	50	23	0	58	17	1.38
23848619--23848656	12	3.2	12	88	0	58	23	0	60	15	1.35
23850820--23850876	27	2.1	27	87	6	80	52	15	3	28	1.59
23868671--23868874	27	7.3	27	72	12	128	30	16	25	27	1.96
23868672--23868825	57	2.7	57	92	1	254	27	16	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23869566--23869606	3	13.7	3	85	10	57	68	0	2	29	1.03
23869571--23869602	16	2.0	16	100	0	64	68	0	0	31	0.90
23869565--23869601	19	1.9	19	94	0	65	67	0	2	29	1.04
23870674--23870705	11	2.8	12	86	13	50	25	28	28	18	1.98
23876257--23876328	27	2.7	27	87	6	103	27	13	27	30	1.94
23883261--23883360	50	2.0	50	92	0	164	28	32	15	25	1.95
23886361--23886471	57	1.9	57	83	3	143	34	12	17	36	1.87
23886375--23886498	57	2.2	57	81	10	146	33	12	16	36	1.87
23891676--23891713	18	2.1	18	85	9	51	47	15	15	21	1.82
23892269--23892314	22	2.0	22	83	4	56	32	6	13	47	1.68
23897678--23897721	5	8.8	5	94	0	61	20	72	0	6	1.07
23899160--23899186	2	13.5	2	100	0	54	0	48	0	51	1.00
23901254--23901305	26	2.0	26	92	0	86	50	9	11	28	1.70
23904461--23904509	2	26.0	2	78	12	50	48	4	0	46	1.20
23913165--23913698	45	11.9	44	80	4	489	26	17	25	30	1.97
23924673--23924714	21	2.0	21	85	4	57	64	11	9	14	1.50
23926130--23926172	16	2.7	16	77	0	50	6	6	16	69	1.32
23927464--23927490	10	2.7	10	100	0	54	77	0	0	22	0.76
23929002--23929062	24	2.7	24	77	10	65	44	24	8	22	1.80
23938367--23938398	16	2.0	16	93	0	55	31	12	3	53	1.54
23942311--23942375	21	3.0	21	71	20	62	4	33	0	61	1.16
23945499--23945551	27	2.0	26	82	14	63	13	7	20	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23947395--23947462	27	2.5	27	83	4	75	29	25	20	25	1.99
23947444--23947520	27	2.9	28	80	7	97	28	31	18	22	1.97
23947390--23947611	81	2.8	80	75	4	212	25	31	19	22	1.98
23947457--23947545	27	3.3	27	81	6	90	22	30	21	25	1.99
23947557--23947642	27	3.2	27	83	1	111	24	34	19	20	1.96
23947600--23947648	27	2.0	24	84	15	64	26	34	14	24	1.94
23948282--23948307	9	2.9	9	100	0	52	65	11	11	11	1.48
23949263--23949287	13	1.9	13	100	0	50	44	16	0	40	1.47
23960306--23960339	18	1.9	18	88	5	52	44	2	8	44	1.50
23960277--23960607	147	2.3	144	82	8	418	41	4	9	45	1.56
23960534--23960577	19	2.3	19	88	0	61	45	2	2	50	1.27
23973193--23973679	246	2.0	246	93	1	825	41	14	13	29	1.85
23973849--23973895	21	2.2	21	84	0	58	31	12	10	44	1.77
23976569--23976650	21	3.9	21	76	7	85	34	7	18	40	1.78
23979574--23979616	22	2.0	22	81	9	52	34	0	13	51	1.42
23981447--23981896	225	2.0	225	99	0	882	28	16	24	30	1.97
24002172--24002226	24	2.3	24	84	6	67	54	9	14	21	1.68
24004114--24004173	24	2.5	24	91	0	93	48	6	16	28	1.71
24006486--24006573	43	2.0	43	86	0	122	30	9	18	42	1.81
24006486--24006573	21	4.1	22	80	5	108	30	9	18	42	1.81
24020930--24020970	21	2.0	21	90	0	64	39	2	12	46	1.54
24027106--24027148	2	21.5	2	100	0	86	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24028170--24028305	36	3.8	36	80	0	164	36	11	27	25	1.90
24030367--24030597	108	2.1	108	96	1	428	38	12	16	32	1.86
24030617--24030670	21	2.6	21	81	0	63	33	31	5	29	1.80
24033029--24033186	78	2.0	78	92	0	262	25	28	14	31	1.95
24036690--24036728	18	2.2	18	86	9	53	25	5	5	64	1.35
24050697--24050752	19	3.0	19	81	2	60	28	28	17	25	1.98
24057087--24057142	18	3.1	18	87	7	69	25	30	21	23	1.99
24060298--24060402	27	3.9	27	87	0	156	33	24	17	24	1.96
24067363--24067516	27	5.7	27	83	3	193	30	22	20	25	1.98
24067363--24067516	54	2.9	54	88	3	220	30	22	20	25	1.98
24067362--24067520	81	2.0	81	91	2	257	30	22	20	25	1.98
24069515--24069568	24	2.2	24	87	6	74	35	1	25	37	1.67
24078887--24078963	37	2.1	37	85	4	102	24	24	20	29	1.99
24081312--24081388	36	2.1	36	82	0	91	35	25	9	29	1.87
24090868--24090905	19	2.0	20	84	5	51	60	5	34	0	1.19
24091339--24091398	17	3.5	17	82	11	61	21	26	10	41	1.85
24095849--24096631	392	2.0	392	93	0	1332	31	15	17	35	1.91
24097408--24097610	106	1.9	106	92	0	343	40	5	10	42	1.63
24097558--24097800	123	2.0	122	86	2	344	39	8	13	38	1.74
24100976--24101007	12	2.7	12	95	0	55	25	31	15	28	1.96
24105580--24105639	17	3.5	17	76	0	66	18	25	10	46	1.79
24121631--24121777	40	3.7	41	81	4	140	26	22	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24121618--24121858	80	3.0	80	81	2	252	27	22	17	32	1.96
24121678--24121858	40	4.5	40	84	0	227	27	22	17	32	1.97
24123924--24123967	23	2.0	23	86	4	63	38	9	0	52	1.33
24137437--24137463	13	2.1	13	100	0	54	51	0	14	33	1.43
24144396--24144463	22	3.1	21	74	4	64	63	10	7	19	1.49
24144402--24144463	11	5.6	11	72	0	52	64	9	6	19	1.45
24144427--24144474	22	2.2	22	84	0	60	64	14	8	12	1.49
24145032--24145072	14	2.9	14	85	7	57	34	21	0	43	1.53
24151402--24151487	26	3.3	25	82	6	100	27	27	16	27	1.97
24151423--24151505	26	3.2	26	87	0	103	28	24	14	32	1.94
24166270--24166404	26	5.2	26	80	1	137	26	22	15	34	1.94
24166247--24166392	52	2.8	52	82	4	161	25	23	17	33	1.96
24167349--24167410	30	2.0	31	96	3	117	32	19	3	45	1.66
24170355--24170398	19	2.1	21	84	12	56	20	18	34	27	1.96
24172166--24172443	61	4.7	59	80	5	310	35	0	26	37	1.60
24172187--24172450	30	8.9	28	80	8	215	35	0	26	37	1.60
24174869--24175379	39	13.1	39	74	6	401	22	19	33	24	1.97
24174869--24175362	78	6.3	78	84	1	587	22	19	33	24	1.97
24190320--24190357	7	5.6	7	84	6	51	34	26	23	15	1.95
24204412--24204585	43	4.0	43	79	3	152	33	18	19	28	1.95
24204439--24204604	86	1.9	86	82	0	206	33	18	19	28	1.95
24209428--24209515	20	4.4	20	77	9	81	39	20	22	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24209427--24209515	40	2.2	40	85	0	115	40	20	22	16	1.91
24209438--24209516	20	4.0	20	80	6	88	39	21	24	15	1.91
24214064--24214121	19	2.9	20	80	12	66	41	0	3	55	1.17
24218673--24218807	15	9.1	16	65	25	64	48	0	0	51	1.06
24218726--24218807	32	2.9	26	69	19	74	48	0	1	50	1.08
24218666--24218807	58	2.4	58	88	6	198	47	0	0	51	1.05
24218977--24219048	16	4.5	16	87	3	101	27	30	4	37	1.76
24219969--24220040	26	2.9	24	74	10	63	62	0	0	37	0.95
24222203--24222258	21	2.7	21	80	0	76	21	25	17	35	1.95
24224450--24224547	45	2.2	45	90	0	160	24	27	24	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135