genome.fa.s2.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  38  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9751658--9751703	24	2.0	24	91	4	76	47	10	17	23	1.79
9751659--9751717	12	5.0	12	79	2	66	42	10	16	30	1.82
9754157--9754189	9	3.7	9	95	0	57	12	21	0	66	1.23
9758485--9758544	28	2.1	28	82	14	70	66	5	11	16	1.40
9759311--9759398	30	3.0	30	88	3	135	36	25	1	37	1.63
9763250--9763295	12	3.8	12	79	2	56	56	15	17	10	1.67
9771576--9771647	37	1.9	37	88	0	108	38	20	18	22	1.93
9771528--9771691	82	2.0	82	83	6	204	40	16	20	23	1.91
9773594--9773761	28	5.8	27	72	15	106	33	25	4	36	1.75
9773778--9773810	16	2.1	15	94	5	57	6	9	0	84	0.76
9775604--9775698	47	2.0	47	85	0	127	28	12	18	40	1.88
9776456--9776513	30	1.9	31	86	10	84	41	5	8	44	1.57
9776458--9776524	30	2.2	31	82	10	77	38	8	7	44	1.64
9781429--9781516	46	1.9	46	86	4	124	56	11	6	25	1.58
9782078--9782468	197	2.0	198	89	1	604	27	26	15	30	1.96
9792421--9792467	21	2.2	21	80	0	58	23	31	21	23	1.98
9794177--9794218	17	2.4	18	84	11	61	38	0	7	54	1.28
9794189--9794252	17	3.8	17	71	17	53	46	3	3	46	1.34
9796111--9796191	29	2.8	29	82	14	87	34	23	7	34	1.83
9796147--9796609	58	7.9	59	88	4	600	32	27	3	35	1.75
9796295--9796444	29	5.1	29	64	21	71	34	28	2	35	1.71
9796147--9796609	117	4.0	117	87	3	594	32	27	3	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9796524--9796630	30	3.6	29	68	18	69	29	23	4	42	1.74
9796147--9796609	59	7.9	58	87	5	585	32	27	3	35	1.75
9796179--9796659	117	4.1	116	84	6	471	32	26	4	36	1.76
9796147--9796609	176	2.6	171	85	6	592	32	27	3	35	1.75
9808786--9809436	200	3.3	199	92	0	1050	35	22	23	19	1.96
9809770--9809811	17	2.4	18	84	11	61	38	0	7	54	1.28
9809782--9809845	17	3.8	17	71	17	53	46	3	3	46	1.34
9811771--9812050	30	9.5	29	66	26	110	34	28	1	35	1.68
9811743--9812050	59	5.2	59	87	1	413	34	27	2	35	1.70
9812498--9812662	28	5.7	29	72	14	117	27	18	6	47	1.72
9812478--9812662	57	3.2	56	79	10	187	27	17	6	48	1.72
9812478--9812671	29	6.8	28	77	6	149	27	18	6	48	1.71
9813474--9813839	127	2.9	127	83	2	459	27	23	16	32	1.96
9814290--9814314	13	1.9	13	100	0	50	28	0	8	64	1.22
9829661--9829704	15	2.9	15	83	6	52	4	20	0	75	0.98
9830490--9830597	43	2.5	44	83	7	130	61	5	23	10	1.49
9834891--9834949	12	4.9	12	76	13	59	74	0	25	0	0.82
9834925--9834956	15	2.1	16	94	5	57	71	0	28	0	0.86
9835087--9835136	18	3.0	17	74	8	50	8	4	16	72	1.24
9849972--9850000	14	2.1	14	100	0	58	41	13	6	37	1.72
9854226--9854277	24	2.2	24	86	6	70	21	7	51	19	1.71
9855190--9855234	10	3.6	13	75	22	51	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9859478--9859836	30	12.1	30	72	13	194	34	23	4	37	1.74
9859481--9859872	60	6.6	61	80	9	347	34	23	4	37	1.76
9859478--9859872	119	3.3	119	78	11	361	34	24	4	37	1.76
9859478--9859889	59	7.0	58	81	9	259	34	23	4	37	1.76
9859700--9859866	29	5.7	30	71	16	109	34	23	5	36	1.79
9861585--9861792	107	1.9	107	94	0	362	32	17	23	26	1.96
9868280--9868345	32	2.1	32	100	0	132	31	30	15	22	1.95
9869377--9869425	22	2.2	22	92	0	80	28	20	28	22	1.98
9871399--9871438	15	2.7	15	88	0	62	47	32	5	15	1.66
9871501--9871531	13	2.4	13	94	0	53	19	16	16	48	1.81
9872580--9872617	3	13.0	3	94	5	69	31	0	0	68	0.90
9872674--9872724	22	2.2	24	77	19	56	23	5	17	52	1.66
9878498--9878531	15	2.3	15	100	0	68	47	35	5	11	1.65
9879634--9879672	5	7.4	5	85	8	51	23	0	2	74	0.94
9882793--9882820	2	14.0	2	100	0	56	50	0	0	50	1.00
9886385--9886449	29	2.2	30	86	8	89	43	6	3	47	1.43
9892852--9892894	15	2.9	14	80	10	50	20	0	2	76	0.89
9896056--9896091	17	2.1	17	94	0	63	47	13	8	30	1.73
9898115--9898182	33	2.1	33	83	5	84	64	23	5	5	1.38
9899682--9899813	60	2.2	61	83	4	160	25	16	11	46	1.80
9900082--9900137	29	1.9	29	85	7	78	51	7	16	25	1.69
9899967--9900158	31	6.4	30	64	18	85	42	14	19	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9901318--9901382	15	4.2	15	75	11	60	30	0	0	69	0.89
9903259--9903430	59	2.9	60	87	2	222	48	12	16	23	1.79
9904222--9904282	32	1.9	31	83	9	79	24	19	8	47	1.76
9905064--9905114	20	2.5	20	90	0	84	68	15	5	9	1.36
9906120--9906147	2	14.0	2	100	0	56	50	0	0	50	1.00
9908257--9908441	41	4.5	41	87	0	244	25	23	10	40	1.86
9909283--9909330	22	2.2	21	77	3	51	35	14	0	50	1.44
9910609--9910681	28	2.9	23	68	26	58	43	0	1	54	1.08
9910609--9910658	11	4.3	12	78	16	52	44	0	2	54	1.11
9910611--9910685	6	13.0	6	73	18	70	45	0	1	53	1.08
9911076--9911155	36	2.2	36	100	0	160	61	18	5	15	1.51
9912308--9912574	29	9.1	30	77	11	243	37	25	0	36	1.61
9912312--9912578	59	4.6	58	81	8	274	38	24	0	35	1.61
9912495--9912628	59	2.3	59	81	2	153	39	29	1	29	1.66
9918203--9918284	17	4.5	17	72	21	60	80	3	10	4	0.99
9919455--9919738	99	2.9	99	85	4	342	39	21	23	16	1.92
9919960--9920034	39	1.9	38	84	7	98	25	24	24	26	2.00
9919979--9920124	78	1.9	78	85	2	204	24	27	20	27	1.99
9920231--9920841	206	3.0	206	92	0	988	34	19	23	22	1.96
9921173--9921282	6	19.0	6	69	20	74	42	1	1	53	1.22
9921173--9921296	17	7.2	17	80	6	133	42	2	1	53	1.23
9922935--9923018	28	3.0	28	79	10	98	39	23	1	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9922917--9923076	58	2.8	56	83	9	198	37	23	2	36	1.69
9922921--9923086	29	5.8	29	77	10	153	37	23	2	36	1.68
9922978--9923198	59	3.8	57	80	8	205	34	24	3	37	1.73
9923034--9923263	59	3.9	58	78	11	202	34	25	3	36	1.74
9923124--9923284	30	5.4	30	68	18	79	34	24	4	36	1.76
9923153--9923285	59	2.3	59	84	6	164	36	24	3	35	1.73
9927107--9927163	22	2.5	22	88	2	78	38	26	22	12	1.89
9927079--9927205	23	5.5	22	78	15	98	40	21	26	11	1.88
9927103--9927205	46	2.3	45	77	14	113	40	22	26	10	1.86
9931710--9931761	17	3.1	16	75	8	50	78	1	11	7	1.02
9952056--9952122	29	2.3	29	87	2	91	64	10	1	23	1.34
9952793--9952853	24	2.5	24	86	0	86	52	11	11	24	1.70
9954745--9954807	24	2.6	24	89	0	99	50	11	14	23	1.74
9954965--9955034	35	2.0	35	100	0	140	57	17	2	22	1.53
9954968--9955026	19	3.3	19	64	22	54	59	15	3	22	1.51
9957110--9957236	23	5.4	23	74	14	84	41	21	22	14	1.89
9959284--9959369	45	1.9	45	87	0	127	48	3	5	41	1.44
9959935--9959970	18	2.0	18	88	0	54	25	5	13	55	1.60
9960078--9960369	61	4.8	62	84	5	353	32	20	13	33	1.91
9960079--9960377	123	2.5	120	82	9	363	31	21	13	34	1.91
9964212--9964569	165	2.2	166	88	5	528	38	5	4	51	1.45
9964212--9964569	83	4.3	82	91	3	513	38	5	4	51	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9966434--9966525	30	3.1	30	83	9	91	26	5	5	63	1.38
9967433--9968032	62	9.9	60	76	10	469	36	15	20	28	1.93
9967419--9968032	177	3.4	174	77	11	442	36	16	19	27	1.93
9967424--9968032	61	10.1	60	76	12	479	36	16	19	27	1.93
9983844--9983887	21	2.0	23	86	8	65	29	4	2	63	1.26
9990025--9990049	9	2.8	9	100	0	50	68	12	12	8	1.40
9991929--9992246	30	10.7	30	78	9	192	36	26	2	33	1.71
9991929--9992244	60	5.3	59	77	9	220	37	26	2	33	1.71
9991930--9992302	59	6.3	58	75	11	210	35	27	4	32	1.76
9991958--9992260	29	10.2	30	75	12	177	36	26	3	33	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135