genome.fa.s2.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  45  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11667595--11667843	53	4.7	53	90	0	374	33	23	15	27	1.95
11671320--11671360	12	3.3	12	80	6	55	73	2	2	21	1.07
11674471--11674503	3	10.7	3	93	6	57	33	0	0	66	0.92
11674897--11674933	20	2.0	20	89	10	60	21	10	27	40	1.86
11676109--11676176	33	2.1	33	94	0	118	23	11	30	33	1.91
11676817--11677088	139	2.0	139	94	0	481	30	11	26	31	1.91
11678317--11678355	15	2.5	16	83	4	53	51	7	7	33	1.59
11678960--11678996	17	2.1	18	90	5	58	62	8	5	24	1.44
11681833--11681903	18	4.3	18	72	20	73	11	32	11	45	1.75
11689531--11689569	15	2.5	16	83	4	53	53	12	2	30	1.52
11693840--11693966	43	3.0	43	80	0	155	32	7	20	39	1.81
11694155--11694213	28	2.1	28	87	0	82	23	15	11	49	1.77
11697505--11697538	13	2.6	13	85	0	50	58	11	0	29	1.33
11698446--11698510	19	3.3	20	77	14	64	49	0	33	16	1.47
11706534--11706586	20	2.7	19	75	16	54	67	15	7	9	1.39
11721347--11721601	43	5.9	43	74	6	115	34	24	14	27	1.94
11721345--11721601	86	3.0	84	72	7	212	33	25	14	26	1.94
11721512--11721709	104	1.9	104	81	4	238	31	24	12	30	1.92
11724469--11724580	37	3.0	37	100	0	224	56	16	5	21	1.60
11728377--11728613	41	5.8	41	81	6	225	19	26	17	35	1.94
11728377--11728613	82	2.9	82	82	3	255	19	26	17	35	1.94
11728895--11728959	32	2.1	32	85	8	89	66	0	3	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11728888--11728952	20	3.2	20	73	18	55	67	0	1	30	1.00
11735668--11735705	19	2.0	20	85	10	53	21	7	36	34	1.82
11740040--11740088	21	2.3	21	89	3	71	59	4	4	32	1.35
11743240--11743293	13	4.2	13	75	15	58	38	5	5	50	1.49
11743764--11743845	32	2.6	31	83	11	96	57	9	7	25	1.57
11743764--11743843	31	2.5	32	80	13	94	58	10	7	23	1.56
11745536--11745570	17	2.1	17	89	5	54	74	0	0	25	0.82
11746572--11746646	36	2.1	36	97	0	141	50	12	16	21	1.76
11751567--11751619	26	2.0	26	85	0	70	35	22	15	26	1.93
11751600--11751724	25	5.0	25	80	4	117	37	22	14	25	1.92
11751611--11751724	50	2.3	50	81	3	140	39	22	14	23	1.91
11754785--11754826	16	2.5	17	84	7	59	47	0	11	40	1.40
11758372--11758406	2	17.5	2	100	0	70	51	0	0	48	1.00
11759862--11759915	20	2.5	22	82	8	67	66	22	3	7	1.33
11759876--11759988	12	9.4	12	66	10	52	67	23	6	3	1.29
11759881--11759944	23	2.8	24	76	4	69	65	21	6	6	1.38
11759881--11759945	24	2.8	24	74	6	62	66	21	6	6	1.37
11761492--11761552	30	2.0	30	90	0	95	37	9	18	34	1.83
11763587--11764175	294	2.0	294	98	0	1133	31	15	23	29	1.96
11765424--11765479	17	3.3	17	92	0	85	21	12	21	44	1.85
11767791--11767860	18	3.9	17	69	12	50	41	2	0	55	1.14
11770893--11770928	15	2.4	15	85	0	54	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11773501--11773974	215	2.2	213	85	3	655	34	10	13	41	1.79
11779929--11780521	46	13.0	46	81	6	620	34	24	15	25	1.95
11779885--11780521	91	7.0	92	79	8	607	34	24	15	25	1.95
11782588--11782878	43	6.8	43	89	4	437	19	31	21	27	1.97
11783160--11783212	21	2.5	21	90	0	79	0	45	20	33	1.52
11783207--11783354	66	2.3	66	90	1	235	16	24	16	43	1.87
11788744--11788823	8	9.8	8	76	15	67	55	0	1	43	1.08
11788744--11788818	30	2.7	27	85	8	98	54	0	1	44	1.08
11788742--11788823	4	20.0	4	69	14	51	54	0	1	43	1.07
11788774--11788827	26	1.9	29	82	17	62	55	0	0	44	0.99
11788839--11788908	19	3.7	19	75	9	72	50	4	0	45	1.21
11788852--11789754	105	8.4	113	71	16	528	49	4	1	44	1.34
11789073--11789161	8	10.0	9	68	17	53	57	2	0	40	1.11
11789084--11789183	26	3.7	26	78	16	96	54	3	0	43	1.16
11789060--11789262	22	9.0	22	64	23	73	53	3	0	42	1.24
11788744--11789396	18	35.3	18	65	19	104	50	3	1	43	1.31
11789128--11789601	76	6.5	76	81	10	585	50	4	1	43	1.33
11789003--11789736	210	3.5	210	89	4	1002	49	4	1	43	1.33
11789009--11789601	286	2.1	288	92	1	994	50	4	1	43	1.32
11789009--11789829	286	2.9	284	84	9	981	49	4	1	43	1.33
11789721--11789817	26	3.5	26	78	17	90	53	3	0	43	1.16
11790085--11790133	18	2.7	18	80	0	71	48	2	0	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11790128--11790270	44	3.5	44	67	26	132	49	5	1	43	1.34
11790173--11790206	10	3.2	10	84	15	50	55	0	0	44	0.99
11789425--11790845	765	1.9	765	97	0	2700	43	6	7	41	1.60
11790120--11790364	76	3.2	76	94	2	422	51	5	1	41	1.34
11790255--11790613	135	2.6	137	87	3	517	49	4	2	43	1.35
11790486--11790582	26	3.5	26	78	17	90	53	3	0	43	1.16
11804589--11804632	23	1.9	23	85	0	61	65	2	2	29	1.16
11817489--11817555	23	2.9	23	77	0	71	44	20	20	13	1.85
11819176--11819226	21	2.4	21	86	0	66	31	25	13	29	1.94
11820401--11820580	42	4.3	42	86	8	217	40	8	24	26	1.84
11824080--11824154	21	3.6	21	78	3	71	26	14	25	33	1.94
11829874--11829919	23	2.0	23	86	0	65	43	8	15	32	1.77
11830306--11830468	86	1.9	87	98	1	319	34	12	11	42	1.78
11844643--11844823	32	5.7	32	83	2	220	37	16	16	29	1.91
11853374--11853524	23	6.6	23	89	0	221	45	17	4	31	1.69
11853513--11853697	25	7.4	26	78	16	185	43	18	7	30	1.76
11853504--11853697	50	3.9	51	89	4	218	44	18	7	30	1.76
11853513--11853679	75	2.2	76	84	7	216	44	19	6	29	1.76
11855870--11855911	17	2.6	16	85	7	57	23	0	0	76	0.79
11856483--11856563	32	2.6	32	81	16	98	30	18	9	40	1.83
11856449--11856614	91	1.8	91	81	2	208	25	15	11	46	1.79
11857424--11857556	70	1.9	67	86	7	187	32	11	12	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11870793--11870832	20	2.0	20	90	0	62	17	22	17	42	1.89
11877253--11877330	14	5.7	14	72	11	63	20	25	23	30	1.98
11877265--11877330	20	3.2	20	84	2	87	21	25	21	31	1.98
11877309--11877333	13	1.9	13	100	0	50	16	24	20	40	1.91
11877265--11877330	7	9.7	7	77	6	64	21	25	21	31	1.98
11881141--11881190	14	3.4	14	88	5	73	0	16	4	80	0.87
11881125--11881190	5	13.4	5	84	9	73	4	16	3	75	1.09
11883305--11883344	17	2.4	17	87	4	55	12	2	7	77	1.07
11883819--11883862	17	2.6	17	85	3	63	29	2	0	68	1.02
11894304--11894349	2	23.5	2	95	4	85	50	0	50	0	1.00
11897509--11897577	30	2.3	31	85	7	88	18	14	18	47	1.82
11899432--11899810	196	1.9	197	96	0	697	29	13	24	32	1.94
11900623--11900662	20	2.0	20	85	5	53	45	0	7	47	1.31
11901822--11901862	20	2.0	21	90	4	66	36	4	21	36	1.75
11910642--11910745	37	2.7	38	76	5	93	33	26	17	22	1.96
11911580--11911636	2	29.5	2	92	7	100	50	0	0	49	1.00
11911580--11911636	27	2.1	27	100	0	114	50	0	0	49	1.00
11914105--11914156	18	2.7	19	77	11	54	51	1	3	42	1.31
11914082--11914156	37	2.1	37	82	7	91	56	1	2	40	1.22
11920430--11920464	17	2.1	17	88	0	52	11	2	11	74	1.18
11921153--11921205	26	2.1	25	85	3	70	75	1	3	18	1.05
11921153--11921215	19	3.5	17	82	8	63	73	1	3	22	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11921247--11921320	8	8.4	9	72	20	59	68	2	0	28	1.03
11921336--11921383	20	2.3	21	75	3	53	62	10	2	25	1.38
11921947--11922006	29	2.1	28	84	9	77	40	0	0	60	0.97
11921955--11922018	29	2.3	29	82	17	82	39	0	1	59	1.07
11922004--11922049	11	4.3	11	86	2	58	28	0	8	63	1.24
11922037--11922070	9	3.7	9	88	7	50	29	0	2	67	1.05
11921934--11922062	10	12.9	10	69	19	58	36	0	3	59	1.16
11922037--11922079	10	4.6	9	88	8	50	27	0	4	67	1.10
11922037--11922120	20	4.2	21	72	13	54	30	1	5	61	1.27
11922123--11922160	2	19.0	2	100	0	76	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135