genome.fa.s2.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  49  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12965376--12965492	43	2.7	43	89	0	180	26	23	11	38	1.88
12967797--12967834	17	2.2	17	100	0	76	39	39	0	21	1.53
12968606--12968889	23	12.3	23	89	0	397	34	4	14	46	1.65
12982775--12982845	20	3.6	19	84	5	88	49	14	7	29	1.69
12982765--12982845	19	4.0	20	80	8	92	49	12	6	32	1.65
13002339--13002386	20	2.5	19	81	18	55	64	0	33	2	1.05
13003272--13003372	50	2.0	50	100	0	202	36	19	21	21	1.95
13009452--13009488	19	2.0	19	89	5	58	43	8	5	43	1.57
13011483--13011541	19	2.9	19	77	7	55	45	13	8	32	1.74
13013682--13013747	28	2.4	28	84	0	87	22	28	16	31	1.96
13014173--13014197	12	2.1	12	100	0	50	24	68	0	8	1.16
13020001--13020189	24	7.9	24	88	0	270	28	26	21	23	1.99
13023169--13023206	16	2.4	17	82	13	53	42	0	7	50	1.31
13023170--13023214	14	3.0	16	84	9	51	44	2	6	46	1.42
13029810--13030177	42	8.9	41	78	9	320	24	24	26	24	2.00
13029810--13030196	84	4.7	83	79	8	357	24	24	26	25	2.00
13032170--13032290	43	2.9	42	93	2	215	22	19	13	45	1.84
13035134--13035485	66	5.2	66	72	11	264	47	1	4	45	1.34
13035013--13035495	18	27.8	18	64	19	111	46	2	4	46	1.36
13035012--13035370	158	2.3	158	94	3	625	45	2	5	46	1.40
13035361--13035467	31	3.3	31	75	14	117	49	0	3	46	1.19
13035408--13035494	26	3.5	26	75	16	94	49	1	2	47	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13035102--13035424	49	6.3	49	76	15	289	47	1	5	45	1.35
13035134--13035944	274	3.0	272	87	9	1242	46	2	5	45	1.38
13035341--13035520	66	2.7	64	81	9	182	46	1	5	47	1.31
13035315--13035954	253	2.7	242	83	10	784	46	2	5	45	1.38
13035570--13035608	18	2.2	18	86	9	53	48	0	10	41	1.37
13035621--13035653	17	1.9	17	93	0	57	57	0	3	39	1.14
13035608--13035722	17	7.2	17	64	18	50	48	0	3	46	1.25
13035408--13035974	253	2.2	254	90	5	907	46	2	5	46	1.38
13035861--13035928	17	4.2	17	67	14	54	45	1	2	50	1.26
13035999--13036050	17	2.9	18	88	5	88	40	0	0	59	0.97
13035999--13036050	8	6.1	8	79	20	61	40	0	0	59	0.97
13041561--13041717	66	2.4	66	86	2	217	43	15	24	15	1.86
13041704--13041741	11	3.5	11	80	20	53	28	23	47	0	1.52
13041703--13041755	21	2.5	21	93	0	88	32	20	47	0	1.51
13045649--13045719	37	2.0	36	91	5	117	14	21	28	36	1.92
13047565--13047596	14	2.3	14	94	0	55	43	21	3	31	1.68
13049113--13049147	17	2.0	18	88	5	54	54	0	0	45	0.99
13050138--13050168	6	5.2	6	92	0	53	0	48	16	35	1.46
13052790--13052841	23	2.3	22	83	9	61	63	3	9	23	1.41
13056490--13056524	17	2.1	17	88	0	52	17	11	25	45	1.81
13057114--13057195	40	2.0	40	100	0	164	28	17	7	47	1.74
13059884--13059962	30	2.6	31	94	4	128	22	31	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13061626--13061836	56	3.8	55	75	8	196	23	16	25	35	1.95
13061650--13061836	56	3.4	56	79	5	218	22	15	25	35	1.94
13063537--13063735	56	3.6	55	82	3	213	24	15	25	34	1.94
13078261--13078314	22	2.5	22	96	0	99	16	22	12	48	1.80
13084742--13084887	58	2.5	58	85	11	192	47	2	0	50	1.18
13084806--13084887	32	2.9	26	69	19	74	50	0	1	48	1.08
13084971--13085075	46	2.5	44	82	13	114	37	25	5	31	1.80
13084982--13085075	44	2.1	44	86	7	127	37	26	5	30	1.79
13085057--13085096	16	2.5	16	91	0	71	27	32	5	35	1.79
13091972--13092010	20	2.0	20	90	10	62	15	7	12	64	1.49
13105886--13106005	27	4.5	26	78	9	116	26	26	15	30	1.96
13105872--13105986	54	2.1	55	80	7	137	29	22	16	31	1.96
13105885--13105987	54	1.9	54	86	4	145	28	25	16	30	1.97
13108109--13108143	12	2.9	12	91	0	52	17	5	0	77	0.96
13108109--13108143	17	2.1	17	89	10	54	17	5	0	77	0.96
13115535--13115569	12	2.9	12	91	0	52	17	5	0	77	0.96
13115535--13115570	17	2.1	17	90	10	56	16	5	0	77	0.94
13123610--13123658	21	2.2	24	85	10	68	44	16	4	34	1.66
13129205--13129262	25	2.3	25	100	0	116	18	27	25	27	1.98
13130536--13130590	3	18.0	3	89	10	85	0	32	0	67	0.91
13140717--13140765	21	2.2	24	85	10	68	44	18	4	32	1.68
13151455--13151513	18	3.3	18	78	4	66	30	23	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13158419--13158521	18	5.7	18	78	4	109	34	21	21	22	1.96
13158403--13158521	54	2.2	54	81	4	132	33	21	20	25	1.97
13160364--13160447	6	14.7	6	70	18	63	42	3	1	52	1.26
13160364--13160425	17	3.4	18	87	12	92	40	4	0	54	1.22
13160342--13160447	11	9.4	11	71	13	56	43	3	2	50	1.35
13161200--13161250	23	2.2	24	82	3	59	62	3	5	27	1.36
13161206--13161250	23	1.9	23	86	4	63	60	4	4	31	1.37
13162052--13162290	29	8.1	31	81	8	234	37	25	2	34	1.70
13162157--13162436	87	3.2	85	78	10	259	33	25	5	35	1.79
13172607--13173458	92	9.2	92	82	8	1019	32	16	19	31	1.94
13172614--13173441	188	4.4	186	83	9	1130	32	16	19	31	1.94
13172607--13173458	280	3.1	277	85	7	1154	32	16	19	31	1.94
13173723--13173803	17	4.6	17	79	11	83	40	1	1	56	1.15
13173723--13173806	6	14.7	6	70	18	54	42	1	1	54	1.15
13173756--13173806	11	4.7	11	76	11	52	47	1	1	49	1.24
13174622--13174661	21	1.9	21	85	10	55	47	0	5	47	1.24
13175640--13175949	58	5.3	59	83	5	324	35	27	3	33	1.75
13175640--13175995	58	6.1	58	80	7	310	34	27	4	33	1.77
13175640--13175949	29	10.5	30	82	7	289	35	27	3	33	1.75
13175713--13175993	87	3.2	87	78	11	272	35	27	4	32	1.77
13176071--13176130	28	2.1	28	84	6	77	35	30	6	28	1.83
13175954--13176263	146	2.1	146	81	5	342	30	24	8	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13175994--13176263	148	1.8	146	82	6	348	29	23	8	37	1.85
13185073--13185677	39	15.5	39	71	1	377	23	30	19	26	1.98
13185073--13185734	156	4.2	156	86	0	860	24	29	19	26	1.99
13185073--13185708	78	8.2	78	84	0	761	23	30	19	26	1.98
13187768--13187947	30	6.0	30	85	7	242	36	27	0	35	1.61
13189202--13189256	24	2.3	24	90	0	83	25	14	10	49	1.76
13191185--13191239	24	2.3	24	87	0	74	25	16	10	47	1.79
13201538--13201605	33	2.1	33	97	0	127	44	19	13	23	1.85
13205702--13205731	14	2.2	14	94	5	53	36	10	23	30	1.87
13216053--13216148	44	2.2	44	92	0	156	27	19	22	30	1.98
13216243--13216272	14	2.2	14	94	5	53	36	10	23	30	1.87
13221708--13221800	27	3.4	27	77	12	84	65	1	0	33	1.00
13221711--13221794	36	2.4	36	78	8	91	65	1	0	33	1.00
13223116--13223271	50	3.2	49	87	4	210	50	11	6	32	1.64
13224661--13224690	11	2.7	11	100	0	60	26	0	6	66	1.16
13224828--13224899	28	2.9	23	82	14	65	68	0	11	20	1.20
13227610--13227656	22	2.1	23	84	11	62	68	2	0	29	1.02
13231510--13231568	17	3.5	17	75	9	57	33	1	6	57	1.35
13247733--13247782	20	2.4	21	81	15	52	42	10	0	48	1.37
13250848--13250877	14	2.2	14	94	5	53	36	10	23	30	1.87
13253202--13253251	23	2.1	24	92	3	84	26	12	8	54	1.64
13256992--13257034	18	2.4	18	92	0	68	53	6	16	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13270438--13270479	21	2.0	22	85	4	59	35	11	21	30	1.90
13297050--13297092	9	4.7	9	82	5	59	0	30	0	69	0.88
13298740--13298786	24	2.0	24	84	16	62	70	6	8	14	1.32
13306436--13306489	23	2.4	22	76	11	56	25	24	7	42	1.80
13309334--13309369	6	6.0	6	86	0	54	30	2	33	33	1.72
13316711--13316759	17	2.9	16	82	8	62	18	12	14	55	1.69
13317810--13317866	26	2.2	26	77	0	60	31	22	21	24	1.98
13331849--13331888	15	2.6	15	88	4	62	65	0	35	0	0.93
13342733--13342775	22	1.9	23	85	4	61	48	6	6	37	1.57
13351803--13352209	203	2.0	203	97	0	762	35	26	13	24	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135