genome.fa.s2.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  63  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18491994--18492085	20	4.6	20	68	11	62	59	2	2	35	1.21
18493142--18493198	30	1.9	30	85	7	80	68	1	21	8	1.26
18493189--18493241	27	1.9	27	88	3	79	66	0	32	1	1.03
18494219--18494253	18	1.9	18	88	0	52	45	0	2	51	1.16
18494968--18495009	19	2.3	19	83	4	50	21	2	7	69	1.25
18496301--18496349	19	2.6	19	81	9	57	38	4	0	57	1.18
18497850--18497904	28	1.9	28	82	10	67	58	5	1	34	1.32
18503815--18503958	41	3.5	41	82	2	164	26	23	9	40	1.84
18504795--18504842	22	2.2	21	77	3	51	35	14	0	50	1.44
18510299--18510376	21	3.6	20	73	18	68	42	24	6	26	1.79
18510911--18511054	41	3.5	41	89	0	198	25	25	10	38	1.87
18511747--18511786	3	13.3	3	100	0	80	67	0	32	0	0.91
18518008--18518045	20	1.9	20	94	0	67	31	13	21	34	1.91
18522348--18522499	29	5.1	29	79	10	137	37	4	21	36	1.74
18522365--18522502	29	4.6	30	81	9	140	39	5	20	35	1.75
18529276--18529423	43	3.4	43	84	3	163	33	18	21	27	1.96
18529442--18529548	44	2.5	43	77	6	117	25	16	26	31	1.97
18531881--18532262	190	2.0	190	98	0	737	38	14	20	26	1.91
18534537--18534849	59	5.3	58	84	6	357	38	2	26	31	1.70
18534561--18534848	58	4.9	57	81	10	300	38	2	26	31	1.69
18534701--18534795	30	3.2	29	69	25	83	36	1	28	33	1.64
18534572--18534848	29	9.5	28	67	22	128	38	1	26	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18534747--18534868	29	4.1	30	74	13	110	39	3	25	31	1.72
18536875--18536922	17	2.8	17	84	6	53	54	6	2	37	1.38
18536907--18536931	13	1.9	13	100	0	50	52	8	0	40	1.31
18543567--18543606	21	1.9	21	85	10	55	37	7	0	55	1.29
18543595--18543648	12	4.4	12	86	9	65	40	1	0	57	1.09
18543911--18543966	16	3.5	16	90	0	94	39	5	28	26	1.78
18543948--18544041	44	2.1	44	86	7	127	30	5	26	37	1.79
18544124--18544220	26	3.6	25	71	22	79	52	0	1	46	1.07
18544122--18544264	57	2.5	57	87	8	202	51	0	0	47	1.05
18544156--18544263	16	7.3	15	69	13	71	50	0	0	49	1.00
18544256--18544306	24	2.1	24	82	10	59	56	0	5	37	1.23
18548885--18548941	23	2.5	22	83	10	71	15	5	5	73	1.19
18548886--18548943	26	2.2	27	84	9	75	17	5	5	72	1.22
18548904--18549088	4	43.8	4	68	23	62	21	5	5	68	1.31
18548904--18549056	18	8.6	18	68	20	65	18	6	5	69	1.30
18548929--18549084	76	2.0	74	80	10	172	21	5	5	67	1.33
18549169--18549217	16	2.8	17	80	14	55	28	0	4	67	1.09
18549168--18549209	19	2.2	19	83	8	50	30	0	4	64	1.14
18552585--18552755	27	6.3	27	84	2	227	32	23	18	25	1.97
18552585--18552813	54	4.2	53	79	5	217	33	24	18	24	1.97
18552761--18552814	28	1.9	28	84	0	72	37	22	18	22	1.95
18558818--18558847	14	2.2	14	94	5	53	30	23	10	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18564312--18564344	14	2.3	15	90	10	52	12	9	6	72	1.26
18564320--18564358	20	1.9	20	84	5	51	12	10	10	66	1.44
18567247--18567294	16	2.9	16	84	6	60	75	2	20	2	1.02
18567986--18568024	3	13.0	3	100	0	78	33	0	0	66	0.92
18574805--18574991	52	3.6	52	87	0	293	35	23	14	26	1.93
18574886--18574967	26	3.2	26	62	19	62	37	21	10	29	1.88
18575530--18575565	18	2.1	16	90	10	54	30	16	0	52	1.44
18579613--18579681	20	3.4	21	68	6	52	23	18	10	47	1.79
18579692--18579743	21	2.5	21	87	0	68	25	13	13	48	1.79
18580317--18580513	100	2.0	99	87	3	288	35	19	19	25	1.95
18580341--18580661	177	1.8	173	82	7	414	36	20	19	24	1.95
18580513--18580839	99	3.3	98	88	5	437	36	21	20	22	1.95
18582765--18582817	21	2.6	19	82	11	61	20	0	5	73	1.03
18582810--18582866	26	2.2	26	84	6	71	17	5	5	71	1.23
18582808--18583009	10	18.9	10	66	19	61	20	4	4	69	1.25
18582789--18582915	48	2.7	47	76	15	113	18	4	5	70	1.24
18582832--18583021	74	2.4	79	82	11	230	22	4	5	67	1.29
18588463--18588531	31	2.2	31	82	10	79	34	10	11	43	1.75
18591993--18592100	20	5.8	18	69	24	64	51	2	2	42	1.30
18592005--18592053	25	1.9	26	84	12	66	48	6	2	42	1.39
18591988--18592085	17	5.8	17	68	23	55	52	4	3	40	1.36
18595932--18595983	21	2.5	21	83	0	59	25	25	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18599472--18599534	25	2.5	26	84	5	83	30	26	22	20	1.98
18599463--18599534	25	2.8	25	80	2	81	31	25	20	22	1.98
18599494--18599565	26	2.8	26	82	2	83	27	23	16	31	1.96
18610913--18610937	13	1.9	13	100	0	50	48	8	4	40	1.51
18614070--18614131	18	3.4	18	84	0	79	6	30	11	51	1.63
18615026--18615079	25	2.2	25	80	9	67	66	0	5	27	1.13
18620288--18620443	62	2.5	62	79	5	174	33	19	15	32	1.93
18620392--18620629	52	4.6	52	87	3	354	36	24	13	24	1.92
18620392--18620629	103	2.3	104	89	2	372	36	24	13	24	1.92
18627171--18627213	18	2.4	18	80	0	50	18	18	23	39	1.92
18632273--18632417	56	2.6	55	80	6	148	23	20	21	35	1.96
18638332--18638615	141	2.0	141	97	0	532	38	16	20	24	1.93
18649914--18649961	24	2.0	25	87	4	71	27	8	14	50	1.71
18656797--18656821	13	1.9	13	100	0	50	24	24	32	20	1.98
18660275--18660362	45	1.9	46	90	2	142	32	23	15	27	1.95
18665931--18665993	21	3.0	20	75	11	56	65	3	1	30	1.18
18665932--18665998	22	3.1	21	75	12	64	65	2	1	29	1.16
18675203--18675260	27	2.2	25	81	6	71	24	0	5	70	1.07
18681144--18681189	21	2.2	21	96	0	83	32	0	13	54	1.39
18681464--18681503	19	2.1	19	95	0	71	42	5	12	40	1.64
18682428--18682527	43	2.3	42	84	1	137	28	11	15	46	1.79
18683442--18683550	14	7.8	14	68	11	71	27	2	21	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18683434--18683549	21	5.6	20	76	12	92	27	2	22	47	1.64
18683471--18683550	42	1.9	42	89	0	124	26	3	21	48	1.66
18683450--18683595	14	10.5	13	68	7	67	25	2	23	47	1.65
18686379--18686421	11	3.8	11	78	6	50	72	2	0	25	0.97
18704043--18704077	15	2.4	15	90	4	54	14	14	5	65	1.44
18706375--18706423	19	2.8	17	85	14	73	14	10	12	63	1.53
18713376--18713425	25	2.0	25	92	0	82	22	22	4	52	1.64
18715303--18715368	25	2.6	25	87	0	96	24	22	6	46	1.74
18716220--18716310	45	2.0	45	97	0	173	35	13	29	21	1.92
18740431--18740478	18	2.7	18	83	6	62	0	22	2	75	0.91
18740429--18740473	12	3.7	13	82	5	51	0	22	2	75	0.91
18745342--18745372	16	1.9	16	93	0	53	61	0	16	22	1.34
18747526--18747587	17	3.6	17	84	0	79	48	11	22	17	1.79
18750847--18750925	37	2.2	37	88	2	115	22	12	31	32	1.92
18785457--18786050	298	2.0	298	94	0	1046	28	26	14	30	1.95
18787746--18787778	17	1.9	18	88	11	52	15	6	12	66	1.42
18788358--18788399	10	4.0	10	84	9	57	80	0	19	0	0.70
18800184--18800225	17	2.6	16	82	14	50	78	0	19	2	0.86
18800184--18800225	11	3.8	11	75	12	50	78	0	19	2	0.86
18802174--18802757	40	14.6	40	85	1	695	24	14	25	35	1.93
18814075--18814118	17	2.6	17	81	0	52	15	6	11	65	1.44
18840050--18840084	17	1.9	19	88	11	56	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18840047--18840091	17	2.7	16	83	10	54	2	15	0	82	0.77
18847834--18848070	52	4.5	53	79	7	227	33	22	15	29	1.94
18847834--18848066	105	2.2	104	83	3	281	33	22	14	29	1.94
18856181--18856239	26	2.3	26	87	0	91	45	10	25	18	1.81
18860329--18860368	21	1.9	21	89	0	62	35	25	20	20	1.96
18868979--18869005	14	1.9	14	100	0	54	0	40	0	59	0.98
18870987--18871520	266	2.0	266	97	0	1014	26	26	11	35	1.91
18875689--18875792	37	2.7	38	77	5	93	30	25	20	23	1.98
18876644--18876681	14	2.6	15	87	8	60	0	39	0	60	0.97
18888593--18888710	39	3.0	39	98	0	227	27	18	16	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135