genome.fa.s2.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  76  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22965752--22965783	6	5.5	6	92	7	57	15	50	0	34	1.45
22974386--22974432	16	2.9	16	81	6	51	68	6	6	19	1.34
22974996--22975278	148	1.9	148	84	5	385	45	8	3	42	1.51
22976023--22976054	16	2.0	16	100	0	64	43	18	0	37	1.51
22976075--22976114	16	2.5	16	87	0	53	82	2	2	12	0.87
22983864--22983983	3	40.0	3	94	0	213	65	0	32	0	1.04
22983981--22984024	21	2.1	21	100	0	88	52	0	20	27	1.47
22985206--22985310	53	2.0	53	84	3	140	20	18	31	30	1.96
22991533--22991613	40	2.0	40	87	0	117	19	18	29	32	1.96
22996853--22996894	18	2.3	18	100	0	84	47	4	42	4	1.45
23003372--23003424	21	2.5	21	84	0	70	56	0	39	3	1.17
23004480--23004526	9	5.2	10	73	21	50	74	0	23	2	0.93
23004480--23004526	17	2.7	18	90	9	71	74	0	23	2	0.93
23005641--23005672	16	2.0	16	100	0	64	18	12	25	43	1.85
23022629--23022704	38	2.0	39	84	2	100	64	6	22	6	1.41
23046683--23046738	26	2.2	26	78	12	62	30	10	7	51	1.63
23050811--23050893	34	2.4	34	97	2	157	54	2	32	10	1.48
23064728--23065033	23	13.3	23	87	2	427	34	4	14	46	1.64
23075359--23075701	52	6.6	52	86	3	449	35	22	14	27	1.93
23076242--23076277	18	2.1	16	90	10	54	30	16	0	52	1.44
23081977--23082048	7	10.4	7	77	3	74	36	23	22	18	1.95
23081977--23082048	21	3.5	21	90	5	103	36	23	22	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23082016--23082055	14	2.9	14	92	3	64	35	20	22	22	1.96
23088235--23088283	20	2.5	20	82	0	62	38	34	16	10	1.82
23088247--23088288	20	2.1	20	95	0	75	35	28	23	11	1.91
23092692--23092751	24	2.5	24	86	0	84	41	25	8	25	1.83
23103113--23103139	5	5.4	5	100	0	54	62	0	0	37	0.95
23104149--23104187	19	2.1	19	100	0	78	25	20	15	38	1.92
23104616--23104671	29	1.9	29	100	0	112	32	17	16	33	1.92
23112793--23112822	11	2.7	11	100	0	60	46	16	0	36	1.47
23115827--23115914	38	2.3	38	77	9	92	34	13	22	29	1.93
23116553--23116617	6	10.8	6	77	12	71	41	4	0	53	1.21
23116542--23116616	17	4.6	17	81	9	93	40	4	1	54	1.27
23116558--23116616	31	1.9	31	96	0	109	40	5	0	54	1.23
23116624--23116656	12	2.8	12	86	4	50	57	3	0	39	1.14
23117330--23117380	12	4.2	13	78	12	54	60	1	1	35	1.19
23118418--23118655	30	8.0	29	77	6	206	36	19	3	40	1.69
23118406--23118655	60	4.2	60	87	1	342	36	20	3	40	1.69
23118428--23118655	90	2.5	90	85	3	291	35	20	3	41	1.68
23118629--23118769	59	2.4	59	89	2	212	35	26	2	35	1.69
23118406--23118720	30	10.6	29	75	10	194	36	22	2	38	1.69
23119021--23119202	96	1.9	96	82	8	228	28	18	15	38	1.91
23121452--23121483	16	2.0	16	93	0	55	28	18	0	53	1.45
23127034--23127165	23	5.7	23	83	0	174	32	5	14	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23127034--23127165	69	1.9	69	87	0	192	32	5	14	47	1.66
23130537--23130719	23	8.0	23	88	0	267	32	6	15	45	1.72
23134293--23134335	16	2.6	16	88	3	59	81	0	2	16	0.79
23134293--23134350	15	3.7	15	80	13	55	77	1	5	15	1.02
23135099--23135175	30	2.7	29	78	9	86	62	5	0	32	1.17
23137891--23137941	21	2.4	21	93	0	84	27	13	15	43	1.85
23137902--23137948	21	2.2	21	84	0	58	34	12	17	36	1.87
23143687--23143863	50	3.4	52	76	9	184	32	23	15	28	1.95
23150282--23150346	3	22.7	3	78	12	66	0	27	1	70	0.96
23150284--23150339	18	3.5	17	81	18	75	0	25	0	75	0.81
23150282--23150346	21	3.2	20	81	16	73	0	27	1	70	0.96
23152118--23152165	24	2.0	24	84	12	62	70	6	8	14	1.31
23166747--23166833	24	3.6	24	88	0	129	24	11	10	54	1.67
23175909--23175974	34	1.9	35	96	3	125	27	4	25	42	1.74
23180988--23181046	31	1.9	31	85	0	82	42	13	8	35	1.75
23185945--23185996	24	2.1	26	89	10	83	17	3	13	65	1.41
23189044--23189081	19	2.1	19	85	5	51	57	2	5	34	1.35
23190170--23190215	21	2.2	21	92	0	74	13	30	26	30	1.93
23208022--23208062	21	2.0	20	85	4	55	82	0	14	2	0.76
23208022--23208062	10	4.0	10	84	6	55	82	0	14	2	0.76
23213000--23213227	37	6.2	37	86	0	303	13	21	30	34	1.92
23218333--23218604	134	2.0	134	97	0	508	34	16	22	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23219432--23219574	37	3.9	37	87	0	196	14	23	30	30	1.95
23219546--23219590	16	2.8	16	96	0	81	20	33	26	20	1.97
23219511--23219620	53	2.1	53	82	0	130	16	22	31	29	1.96
23226978--23227013	17	2.1	17	94	0	63	52	13	11	22	1.72
23237995--23238044	24	2.1	23	85	10	66	14	8	12	66	1.45
23247054--23247104	6	8.5	6	91	0	75	47	0	31	21	1.51
23251746--23251932	51	3.6	51	82	2	214	31	13	24	31	1.94
23258963--23259030	28	2.4	27	76	11	66	52	25	1	20	1.54
23269375--23269443	20	3.5	20	75	11	79	50	0	0	49	1.00
23269365--23269448	39	2.2	39	93	2	143	51	1	0	47	1.08
23269395--23269448	9	6.7	9	69	30	50	55	0	0	44	0.99
23269809--23269850	22	2.0	21	90	4	66	42	4	11	40	1.63
23271073--23271124	21	2.5	21	75	12	61	25	15	26	32	1.95
23275950--23276052	50	2.1	50	88	0	152	31	14	4	49	1.64
23276270--23276325	26	2.2	26	90	0	85	26	5	5	62	1.39
23276788--23276821	16	2.0	18	88	11	54	38	14	17	29	1.90
23282550--23282722	44	3.9	44	90	0	247	37	9	21	31	1.85
23284130--23284188	27	2.2	27	84	0	73	23	20	22	33	1.97
23288275--23288331	29	2.0	29	89	6	89	19	8	21	50	1.74
23305432--23305618	58	3.3	58	83	9	201	44	2	1	51	1.25
23305531--23305593	26	2.4	28	76	10	69	46	3	0	50	1.17
23306116--23306153	18	2.0	20	85	10	53	42	15	13	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23306403--23306434	14	2.3	14	94	0	55	43	15	21	18	1.87
23310694--23310747	21	2.7	19	78	16	56	51	5	0	42	1.25
23311899--23311955	3	19.0	3	96	0	105	0	31	0	68	0.90
23312813--23312881	14	5.1	13	70	15	50	43	1	1	53	1.18
23313108--23313134	14	1.9	14	100	0	54	59	0	40	0	0.98
23313517--23313552	18	2.1	18	89	5	56	41	0	25	33	1.55
23315541--23315602	30	2.1	30	87	6	90	46	0	32	20	1.51
23315744--23315785	21	2.0	21	86	9	59	40	0	38	21	1.53
23320294--23320349	21	2.7	21	77	5	60	32	26	12	28	1.93
23320979--23321044	25	2.6	26	80	4	73	27	25	19	27	1.99
23321050--23321098	25	2.0	25	87	0	71	34	26	20	18	1.95
23327702--23327745	3	14.3	3	85	4	61	38	2	0	59	1.10
23327705--23327742	19	2.0	19	89	0	58	39	2	0	57	1.12
23327701--23327746	22	2.1	22	91	0	74	41	2	0	56	1.11
23328566--23328608	22	2.0	22	86	4	61	46	2	0	51	1.13
23328569--23328630	30	2.0	32	90	6	101	50	1	1	46	1.20
23329188--23329686	147	3.4	146	88	5	727	41	2	10	45	1.54
23330703--23331171	239	2.0	238	90	1	751	36	7	14	42	1.73
23343176--23343760	42	13.9	42	87	2	825	20	18	24	36	1.95
23344221--23344255	3	11.7	3	100	0	70	34	31	0	34	1.58
23344254--23344285	3	10.7	3	100	0	64	34	0	0	65	0.93
23344816--23345086	148	1.8	149	87	6	408	44	2	8	44	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23345602--23345674	25	2.9	23	80	13	58	23	10	4	61	1.46
23346078--23346557	239	2.0	237	90	1	764	36	6	15	41	1.73
23347571--23347611	19	2.2	19	95	0	73	14	17	21	46	1.84
23357470--23357644	27	6.5	27	85	2	235	22	16	24	37	1.94
23366895--23366995	46	2.2	46	82	3	114	20	12	14	51	1.75
23375346--23375471	30	4.2	29	69	9	74	34	20	2	42	1.65
23375594--23375636	18	2.4	18	80	7	52	32	6	2	58	1.38
23380166--23380335	80	2.1	81	86	4	238	38	16	16	28	1.90
23380769--23380828	7	8.7	7	73	10	52	80	0	18	1	0.80
23380784--23380829	19	2.5	19	89	3	67	80	0	19	0	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135