genome.fa.s2.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  86  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26650626--26650672	22	2.2	21	84	3	58	70	2	8	19	1.24
26651484--26651526	19	2.3	19	84	8	52	58	4	0	37	1.19
26651867--26651915	20	2.5	20	75	0	53	46	8	18	26	1.76
26655705--26655740	17	2.1	17	100	0	72	44	16	22	16	1.86
26659735--26659785	22	2.4	21	80	6	68	68	5	0	25	1.12
26662664--26662712	3	16.3	3	100	0	98	34	0	0	65	0.93
26663040--26663105	29	2.2	28	78	19	64	39	0	7	53	1.30
26663091--26663137	18	2.7	17	80	6	58	40	2	2	55	1.24
26664766--26664808	22	2.0	22	81	9	52	46	4	9	39	1.57
26666121--26666247	57	2.2	59	87	8	179	52	11	10	25	1.69
26669258--26669299	22	1.9	22	85	0	57	21	19	28	30	1.97
26679788--26680071	30	9.5	30	65	17	119	34	2	28	34	1.69
26679788--26680155	59	6.2	58	86	8	426	35	1	28	35	1.67
26679933--26680183	29	8.6	28	72	17	174	35	1	27	35	1.65
26680257--26680590	162	2.1	162	85	4	442	44	12	16	26	1.83
26680790--26680815	11	2.4	11	100	0	52	15	7	0	76	0.99
26681112--26681156	25	1.9	23	82	13	56	31	17	0	51	1.46
26681117--26681164	25	1.9	25	83	8	62	31	22	2	43	1.65
26681165--26681196	16	2.0	16	93	0	55	40	18	21	18	1.91
26681446--26681533	16	5.1	16	72	20	61	42	1	1	55	1.14
26681448--26681533	13	6.7	13	69	16	54	41	1	1	55	1.14
26681448--26681517	7	10.3	7	77	14	67	42	1	1	54	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26681447--26681523	19	4.2	19	75	20	65	42	1	1	54	1.16
26681510--26681540	16	1.9	16	93	0	53	35	0	3	61	1.12
26682248--26682303	15	4.0	13	72	22	51	41	1	0	57	1.09
26684271--26684297	2	13.5	2	100	0	54	51	48	0	0	1.00
26684451--26684489	6	6.2	6	88	11	60	48	2	15	33	1.58
26696277--26696321	21	2.1	21	100	0	90	24	4	22	48	1.68
26696674--26696702	4	7.5	4	92	7	51	48	0	0	51	1.00
26699315--26699365	23	2.2	23	96	0	93	21	11	39	27	1.88
26700571--26700606	15	2.4	15	100	0	72	47	19	22	11	1.80
26702975--26703013	15	2.6	15	91	0	60	25	20	28	25	1.99
26730247--26730292	20	2.3	20	88	3	67	41	19	2	36	1.64
26730280--26730513	23	9.9	23	75	11	118	43	15	4	36	1.67
26730267--26730400	49	2.8	49	91	2	218	41	18	2	38	1.63
26730383--26730515	69	1.9	69	83	3	169	47	12	5	34	1.64
26730383--26730515	23	5.8	23	84	3	151	47	12	5	34	1.64
26730582--26730647	10	6.6	10	83	0	87	43	21	1	33	1.62
26730581--26730647	20	3.3	20	85	0	98	43	20	1	34	1.61
26730722--26730856	66	2.1	64	85	10	177	42	28	10	17	1.82
26731093--26731277	36	5.1	36	91	1	291	37	24	8	28	1.85
26731749--26732044	148	2.0	148	95	0	538	43	18	6	31	1.76
26733368--26733459	36	2.6	36	94	0	166	38	20	16	25	1.93
26736653--26736680	14	2.0	14	100	0	56	42	14	0	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26740873--26740918	18	2.6	18	82	0	65	36	19	19	23	1.95
26761376--26761448	25	2.9	25	81	0	92	23	19	23	34	1.97
26761376--26761466	25	3.6	25	81	0	83	20	20	23	35	1.96
26764070--26764146	27	2.8	28	90	6	120	29	6	6	57	1.49
26767863--26767914	25	2.1	25	89	7	79	25	23	21	30	1.99
26769532--26769556	13	1.9	13	100	0	50	72	16	0	12	1.13
26769547--26769594	20	2.4	20	82	0	60	56	27	4	12	1.54
26769669--26769698	15	2.0	15	100	0	60	46	26	0	26	1.53
26771421--26771691	23	12.0	23	83	5	347	35	5	15	43	1.70
26772817--26772857	3	13.7	3	100	0	82	65	0	0	34	0.93
26773113--26773208	49	2.0	49	85	0	129	37	18	16	27	1.92
26776345--26776482	71	1.9	72	88	4	208	21	13	11	54	1.69
26777009--26777046	17	2.2	17	86	9	51	31	2	2	63	1.22
26778859--26779289	43	10.0	43	79	6	401	28	26	17	27	1.98
26778855--26779216	127	2.8	129	81	5	410	28	25	17	27	1.98
26778847--26779283	170	2.5	171	80	5	533	28	26	17	27	1.98
26784726--26784754	15	1.9	15	100	0	58	34	13	24	27	1.93
26785348--26785380	14	2.4	14	95	5	59	36	0	6	57	1.23
26785276--26785789	121	4.2	121	92	1	861	41	2	5	51	1.36
26785581--26785789	66	3.3	64	67	17	152	43	2	4	49	1.36
26785276--26785789	243	2.1	242	93	1	877	41	2	5	51	1.36
26787285--26787412	43	3.0	43	81	2	141	35	30	11	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26788410--26788444	18	1.9	19	88	11	56	54	0	14	31	1.40
26793513--26793778	114	2.3	118	86	5	380	42	1	7	47	1.41
26794056--26794222	82	2.0	82	96	0	307	39	12	16	31	1.86
26795165--26795202	14	2.7	14	88	8	51	44	34	7	13	1.72
26797341--26797426	40	2.2	40	89	4	129	20	22	17	39	1.92
26798384--26798670	40	7.3	39	80	5	190	32	25	16	26	1.96
26798402--26798671	79	3.4	77	78	10	194	32	25	17	25	1.97
26798402--26798630	39	5.8	39	81	2	226	31	25	17	25	1.97
26799292--26799463	66	2.6	66	88	3	260	43	0	4	52	1.22
26800501--26800637	61	2.2	60	87	5	186	37	24	5	32	1.79
26800484--26800637	30	5.1	30	77	6	150	35	24	6	33	1.81
26803696--26803786	37	2.5	37	81	0	101	18	19	29	31	1.96
26803753--26803809	21	2.7	21	74	15	55	21	22	29	26	1.99
26814863--26814925	32	2.0	32	90	0	99	26	4	7	60	1.45
26815088--26815508	223	1.9	223	95	0	770	26	28	6	38	1.81
26815317--26815671	163	2.2	163	95	0	638	26	27	5	39	1.79
26815629--26815731	29	3.5	29	66	10	91	16	33	9	40	1.81
26815094--26815856	386	2.0	386	96	0	1409	26	28	6	38	1.81
26822203--26822229	13	2.1	13	100	0	54	44	7	7	40	1.60
26822445--26822507	32	2.0	32	90	0	99	26	4	7	60	1.45
26829934--26829967	7	4.9	7	92	0	59	17	0	41	41	1.50
26833026--26833081	3	18.7	3	79	20	64	64	0	32	3	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26833026--26833081	24	2.3	24	85	11	71	64	0	32	3	1.11
26850662--26850783	30	4.1	30	81	7	142	35	3	23	37	1.72
26854412--26854463	21	2.5	21	76	17	54	28	15	26	28	1.96
26855004--26855033	13	2.3	13	94	0	51	20	0	16	63	1.31
26855059--26855190	58	2.3	55	83	11	160	53	5	0	40	1.29
26863117--26863211	20	4.9	20	73	16	76	38	1	1	58	1.12
26863113--26863220	29	3.8	29	73	12	91	37	1	0	60	1.14
26863113--26863211	19	5.1	18	73	15	65	38	1	1	59	1.11
26864750--26864795	25	1.9	23	86	8	65	36	4	4	54	1.40
26871694--26872018	50	6.6	50	85	4	403	33	16	28	21	1.95
26871758--26872018	24	10.7	24	75	4	162	32	17	30	19	1.95
26871694--26872018	99	3.3	99	88	2	442	33	16	28	21	1.95
26872584--26872728	71	2.0	71	95	0	263	23	13	26	36	1.92
26878895--26879149	50	5.1	50	81	5	311	34	17	26	21	1.95
26878973--26879171	24	8.1	24	70	3	101	34	17	27	20	1.95
26878895--26879147	98	2.6	99	87	5	359	35	16	26	21	1.95
26880540--26880586	17	2.8	17	76	0	58	40	4	4	51	1.41
26894586--26894655	11	5.9	12	73	17	58	7	24	0	68	1.14
26895172--26895221	7	7.4	7	77	8	59	16	24	26	34	1.95
26895177--26895201	13	1.9	13	100	0	50	16	24	24	36	1.94
26895172--26895221	20	2.5	20	96	0	91	16	24	26	34	1.95
26895197--26895225	13	2.1	14	93	6	51	13	17	20	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26897105--26897141	17	2.1	17	90	5	56	72	8	0	18	1.08
26900026--26900631	202	3.0	202	96	0	1113	33	17	12	35	1.88
26907057--26907177	19	6.4	19	66	14	70	24	23	22	28	1.99
26911621--26911738	38	3.1	38	82	4	123	23	22	23	30	1.99
26912406--26912608	104	2.0	104	100	0	406	30	23	18	28	1.98
26914124--26914151	11	2.5	11	100	0	56	42	14	10	32	1.80
26919436--26919523	41	2.1	41	100	0	176	43	6	11	38	1.67
26919867--26919932	20	3.4	19	80	14	71	42	15	7	34	1.75
26934295--26934330	18	1.9	19	88	5	56	16	27	25	30	1.97
26938617--26938641	13	1.9	13	100	0	50	16	16	20	48	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135