Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  116  of  135  ( 16151 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34826577--34826611
17
2.1
17
88
0
52
74
0
0
25
0.82
34827018--34827062
12
3.8
12
81
0
54
20
17
13
48
1.80
34827142--34827217
12
6.3
12
73
10
66
30
14
13
42
1.84
34827153--34827239
23
3.7
23
87
4
122
32
12
14
40
1.84
34836505--34836533
2
14.5
2
100
0
58
48
0
0
51
1.00
34838809--34838848
17
2.3
18
91
4
64
40
0
2
57
1.12
34843485--34843536
22
2.4
22
84
15
65
67
3
0
28
1.08
34846255--34847270
339
3.0
338
93
0
1710
36
18
22
22
1.95
34850752--34850813
28
2.2
28
85
0
79
54
8
14
22
1.66
34856291--34856344
10
5.6
10
79
20
62
38
0
0
61
0.96
34856290--34856344
19
2.8
20
84
15
71
38
0
0
61
0.96
34856599--34856648
21
2.4
20
80
9
55
30
2
0
68
1.01
34856598--34856647
22
2.3
21
79
3
55
28
2
0
70
0.99
34858798--34858844
23
2.0
23
95
0
85
48
10
4
36
1.57
34858985--34859114
9
14.3
9
70
13
54
63
3
3
30
1.28
34858986--34859052
26
2.5
26
81
11
66
68
4
1
25
1.17
34859162--34859199
20
1.9
20
88
0
58
60
5
0
34
1.19
34859176--34859248
10
7.6
9
74
10
56
64
2
1
31
1.16
34863075--34863110
18
2.0
18
100
0
72
27
27
16
27
1.97
34871349--34871630
29
9.6
30
66
20
82
37
2
26
33
1.70
34871296--34871660
58
6.3
58
83
3
421
36
2
26
33
1.71
34871761--34872101
162
2.1
161
90
0
538
43
11
17
27
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34872638--34872668
16
1.9
16
100
0
62
38
25
22
12
1.90
34873656--34873759
17
6.4
17
83
9
119
56
0
0
41
1.12
34873656--34873759
6
18.0
6
74
16
87
56
0
0
41
1.12
34873656--34873759
11
9.0
11
73
16
86
56
0
0
41
1.12
34873658--34873752
37
2.5
37
79
19
99
57
0
1
41
1.05
34873645--34873760
17
7.4
16
71
20
75
56
0
0
42
1.11
34874022--34874761
76
10.1
76
90
5
1068
30
19
15
34
1.93
34874022--34874761
151
5.0
150
89
6
1092
30
19
15
34
1.93
34874252--34874748
75
7.0
69
87
8
660
30
19
15
34
1.93
34882597--34882647
24
2.0
27
81
11
63
43
11
23
21
1.85
34886545--34886578
15
2.2
16
89
5
52
64
5
5
23
1.38
34886722--34886811
28
3.1
29
68
17
78
32
2
28
36
1.70
34886683--34887165
58
8.3
59
84
1
544
36
3
27
33
1.73
34886870--34887077
31
7.1
29
65
18
92
36
3
26
33
1.73
34886683--34887165
29
16.5
29
67
20
186
36
3
27
33
1.73
34887267--34887613
162
2.1
161
89
0
532
43
12
17
27
1.84
34889137--34889251
11
9.7
13
74
18
56
52
0
0
46
1.06
34889157--34889260
6
18.0
6
73
18
87
55
0
0
42
1.12
34889157--34889260
17
6.4
16
81
11
104
55
0
0
42
1.12
34889157--34889248
17
5.7
16
86
11
125
56
0
1
42
1.06
34894389--34894483
49
1.9
50
86
2
138
24
9
28
37
1.86
34894889--34894923
18
1.9
18
100
0
70
31
11
11
45
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34895557--34895591
18
1.9
18
88
0
52
42
17
0
40
1.49
34896496--34896541
23
2.0
24
82
4
58
34
2
2
60
1.21
34897072--34897124
16
3.2
16
77
17
56
28
7
0
64
1.21
34897777--34897825
15
3.2
15
80
5
62
36
2
0
61
1.08
34898356--34898399
23
1.9
23
90
0
70
13
25
36
25
1.92
34904289--34904408
58
2.1
58
88
3
179
33
0
15
50
1.45
34904313--34904424
58
1.9
58
85
7
156
33
0
16
50
1.45
34915495--34915584
30
3.0
30
76
13
105
27
15
18
37
1.92
34918346--34918400
23
2.4
22
79
8
65
61
1
3
32
1.24
34929603--34929636
5
6.8
5
100
0
68
20
0
58
20
1.39
34937258--34937305
16
2.8
17
84
12
62
2
25
0
72
0.95
34937263--34937307
16
2.9
16
90
3
65
4
22
0
73
1.01
34937660--34937693
17
2.0
17
88
11
52
38
0
17
44
1.49
34942053--34942090
15
2.6
15
87
4
51
42
0
21
36
1.53
34942356--34942460
38
2.7
41
73
10
110
22
19
28
29
1.98
34944922--34944959
4
9.5
4
100
0
76
76
0
0
23
0.79
34946355--34946409
27
2.0
29
82
13
71
49
3
1
45
1.30
34946802--34946861
25
2.4
26
78
15
72
61
5
0
33
1.17
34946822--34946880
29
2.1
28
81
12
68
62
3
0
33
1.12
34946892--34946970
30
2.7
28
75
12
79
56
5
1
36
1.29
34946803--34946967
9
18.1
9
70
18
69
58
4
1
35
1.25
34948031--34948388
9
38.7
9
65
20
82
32
1
5
60
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34947950--34948101
10
15.5
10
69
10
57
39
1
5
53
1.32
34948258--34948315
26
2.3
25
80
14
66
31
0
1
67
1.01
34948867--34948919
19
2.8
19
75
16
56
67
0
5
26
1.12
34948864--34949120
10
28.0
9
65
20
72
61
4
1
32
1.24
34948926--34948971
16
2.7
17
86
10
67
67
2
0
30
1.03
34948913--34948977
16
4.1
16
80
11
64
66
3
0
30
1.07
34948940--34948986
15
3.1
15
81
9
51
65
4
0
29
1.11
34949058--34949120
19
3.4
18
76
12
65
61
6
0
31
1.21
34949056--34949107
9
5.9
8
79
16
50
61
5
0
32
1.20
34949288--34949346
31
1.9
31
100
0
118
18
18
10
52
1.73
34962353--34962419
30
2.3
30
84
2
82
50
5
1
41
1.36
34962383--34962455
36
2.1
36
82
7
87
46
2
4
46
1.36
34963238--34963306
24
2.9
23
91
6
111
50
20
10
18
1.75
34971408--34971460
7
7.6
7
79
8
54
28
0
26
45
1.54
34971408--34971460
14
3.8
14
82
0
70
28
0
26
45
1.54
34971407--34971460
21
2.6
21
80
8
74
29
0
25
44
1.54
34971725--34971815
45
2.0
45
93
0
155
18
18
31
30
1.95
34973717--34973765
16
3.2
16
72
21
59
30
0
8
61
1.25
34974082--34974122
21
2.0
21
95
0
73
56
12
0
31
1.36
34974405--34974433
12
2.3
13
88
11
51
65
0
0
34
0.93
34974441--34974516
4
18.0
4
74
17
57
0
31
0
68
0.90
34974441--34974514
17
4.5
17
76
15
50
0
32
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34974441--34974516
9
9.0
8
78
16
57
0
31
0
68
0.90
34977463--34977636
39
4.5
39
72
7
104
40
21
14
22
1.90
34978085--34978216
69
1.9
67
86
3
183
33
12
11
42
1.79
34983398--34983432
6
5.8
6
96
0
61
68
0
31
0
0.90
35000511--35000573
24
2.6
24
89
0
99
50
11
14
23
1.74
35002497--35002559
24
2.6
24
87
0
90
49
11
15
23
1.77
35009771--35009802
2
16.0
2
93
0
55
46
0
0
53
1.00
35012252--35012299
11
4.3
11
77
12
53
68
0
0
31
0.90
35014891--35014941
26
2.0
26
88
0
75
35
19
17
27
1.94
35020600--35020645
18
2.6
17
82
3
56
34
4
0
60
1.16
35039111--35039152
22
1.9
22
85
0
57
59
2
21
16
1.48
35040660--35040696
18
2.1
18
89
0
56
48
0
27
24
1.51
35046599--35046643
6
7.5
6
87
0
54
46
2
28
22
1.63
35049778--35049803
2
13.0
2
100
0
52
50
0
0
50
1.00
35056658--35056714
20
2.8
20
81
0
69
12
28
24
35
1.91
35060146--35060255
58
1.9
58
90
3
177
36
11
20
31
1.88
35061269--35061317
15
3.4
14
83
8
62
32
2
2
63
1.17
35061451--35061498
21
2.3
21
82
7
53
50
2
2
45
1.25
35061464--35061524
22
2.7
21
78
12
59
52
1
1
44
1.20
35063367--35063452
41
2.1
41
84
0
109
30
19
30
19
1.97
35063381--35063494
41
2.8
41
80
1
120
34
18
29
17
1.94
35067559--35067716
43
3.7
42
80
5
183
28
17
24
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35067722--35067858
47
3.0
46
75
10
147
32
14
27
25
1.95
35072927--35072951
13
1.9
13
100
0
50
72
0
0
28
0.86
35073585--35073632
24
2.0
25
87
4
71
18
0
10
70
1.15
35081601--35081768
81
2.1
81
100
0
336
24
12
16
47
1.81
35084893--35084986
46
2.0
46
100
0
188
37
28
8
25
1.85
35090381--35090413
16
2.1
16
88
5
50
57
0
3
39
1.14
35090484--35090544
28
2.1
28
91
8
97
29
13
1
55
1.47
35093546--35093605
28
2.1
29
84
3
77
53
8
8
30
1.60
35093546--35093605
29
2.1
28
84
6
77
53
8
8
30
1.60
35101143--35101252
54
2.0
54
98
0
211
40
10
20
28
1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135