genome.fa.s2.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  94  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29277147--29277183	7	5.4	7	96	3	67	86	0	0	13	0.57
29279050--29279091	14	3.1	14	77	16	52	50	2	0	47	1.14
29280750--29280946	72	2.8	72	88	0	279	54	15	6	23	1.63
29280882--29281003	57	2.1	57	95	0	217	54	16	3	25	1.57
29280812--29281058	129	1.9	129	93	0	422	55	16	4	23	1.60
29285773--29285851	42	1.9	40	92	5	131	41	7	3	46	1.50
29287463--29287583	30	4.1	29	80	4	125	38	20	3	38	1.69
29287462--29287574	59	1.9	60	83	5	149	37	18	2	41	1.65
29292655--29292720	21	3.1	21	85	10	82	33	25	13	27	1.94
29298416--29298449	16	2.0	18	88	11	54	32	14	17	35	1.91
29310232--29310302	37	1.9	37	88	0	106	39	16	19	23	1.92
29310100--29310576	208	2.3	208	89	2	699	39	17	20	22	1.93
29310381--29310548	85	2.0	86	85	3	232	36	18	21	23	1.95
29314916--29314966	18	2.7	19	78	6	59	58	0	0	41	0.98
29314975--29315023	21	2.3	21	79	10	55	61	6	4	28	1.38
29319118--29319161	21	2.1	21	100	0	88	25	29	13	31	1.94
29319669--29319723	20	2.7	21	83	10	62	38	1	1	58	1.20
29319608--29319704	48	2.0	48	84	9	126	31	2	4	61	1.26
29319776--29319810	10	3.9	9	85	14	54	37	0	0	62	0.95
29319776--29319826	17	3.1	16	86	10	68	35	0	0	64	0.94
29319770--29319828	24	2.3	24	82	8	73	38	0	0	61	0.96
29319779--29319822	7	5.5	8	87	12	56	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29319776--29319826	8	6.2	8	80	15	52	35	0	0	64	0.94
29319883--29319922	20	2.0	20	90	0	62	15	0	7	77	0.98
29324186--29324223	14	2.6	15	80	19	53	36	0	10	52	1.36
29325855--29326024	38	4.4	39	79	3	184	31	18	15	34	1.92
29337836--29337882	9	4.9	9	76	23	51	46	10	0	42	1.38
29340877--29340910	12	2.8	12	90	0	59	76	0	11	11	1.02
29355012--29355045	17	2.0	17	88	0	50	0	35	5	58	1.22
29372465--29372703	125	1.9	125	92	1	399	31	23	19	25	1.98
29377314--29377379	24	2.7	25	83	6	91	24	27	21	27	1.99
29377318--29377414	24	4.0	24	78	2	88	26	22	22	27	1.99
29377318--29377414	48	2.0	48	84	4	124	26	22	22	27	1.99
29383052--29383299	125	2.0	125	86	0	352	33	22	18	24	1.97
29383740--29383767	2	14.0	2	100	0	56	50	0	0	50	1.00
29385988--29386173	92	2.0	92	97	0	354	34	19	17	28	1.95
29387559--29387686	23	5.9	21	68	26	72	67	0	8	23	1.17
29387544--29387654	37	3.2	36	68	27	105	70	0	7	21	1.17
29387564--29387653	17	5.4	17	70	19	66	70	0	6	23	1.11
29387535--29387683	66	2.3	66	97	0	280	68	0	7	23	1.19
29387568--29387664	19	5.7	19	70	23	65	70	0	7	22	1.12
29387571--29387681	32	3.2	38	71	24	134	67	0	8	24	1.17
29389102--29389136	16	2.2	16	90	10	54	62	5	0	31	1.18
29392235--29392554	162	2.0	163	94	0	570	28	12	18	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29399191--29399274	27	3.1	27	76	8	89	20	15	25	39	1.91
29401123--29401160	18	2.1	18	85	9	51	21	5	0	73	1.02
29401119--29401153	12	2.9	12	86	0	52	22	5	0	71	1.07
29401690--29401734	19	2.4	19	81	7	56	37	0	4	57	1.19
29402641--29402666	9	2.9	9	100	0	52	11	0	0	88	0.52
29402640--29402700	22	2.9	21	76	9	61	18	6	0	75	1.01
29403802--29404007	106	2.0	105	86	4	290	36	12	24	26	1.91
29404563--29404607	19	2.4	19	81	7	56	37	0	4	57	1.19
29405405--29405451	21	2.2	21	84	3	58	17	10	2	70	1.26
29406128--29406552	151	2.8	148	88	2	609	40	3	9	46	1.54
29405764--29406552	138	5.4	149	86	6	951	40	3	9	46	1.54
29412543--29412683	25	5.6	25	82	2	174	21	21	24	31	1.98
29417498--29417535	19	2.0	19	100	0	76	31	21	10	36	1.87
29418195--29418274	17	4.6	17	80	1	79	47	8	21	22	1.78
29433075--29433142	27	2.5	26	86	9	91	27	16	23	32	1.96
29446368--29446440	35	2.1	35	97	0	137	36	0	16	46	1.47
29451358--29451407	23	2.1	23	82	10	57	36	4	4	56	1.37
29459483--29459914	217	2.0	217	95	0	783	32	15	21	30	1.95
29461743--29461806	31	2.1	30	88	2	92	68	3	1	26	1.13
29461827--29461909	29	2.8	29	71	14	71	34	6	21	37	1.78
29463677--29464102	39	10.8	38	73	11	218	24	16	24	33	1.96
29463660--29464182	40	13.2	39	72	10	206	25	17	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29463677--29464188	79	6.5	79	84	0	583	25	16	24	33	1.96
29464186--29464285	40	2.5	40	88	0	146	32	11	21	36	1.88
29464578--29464761	49	3.8	49	76	4	183	19	29	17	33	1.95
29464586--29464787	98	2.1	98	84	3	264	19	28	17	34	1.95
29465675--29465726	21	2.5	22	81	15	65	1	23	0	75	0.91
29473030--29473131	53	1.9	53	95	0	186	39	13	15	31	1.87
29475702--29475729	11	2.5	11	100	0	56	60	28	0	10	1.30
29476639--29476708	29	2.4	28	81	11	70	68	5	2	22	1.24
29476730--29476827	30	3.3	30	85	0	133	35	5	21	37	1.76
29490308--29490344	15	2.5	15	95	0	65	51	8	27	13	1.69
29494439--29494476	14	2.7	14	91	0	67	18	2	28	50	1.61
29504451--29504482	16	2.0	16	93	0	55	34	12	15	37	1.85
29506846--29506891	25	1.9	25	86	8	69	32	4	6	56	1.45
29509432--29509477	24	1.9	23	86	8	65	56	6	4	32	1.45
29516283--29516328	21	2.2	21	88	0	65	67	4	8	19	1.35
29536777--29536821	18	2.4	18	88	3	63	4	13	2	80	0.97
29539758--29539816	29	2.0	29	83	6	75	52	6	1	38	1.38
29558190--29558504	114	2.8	112	79	5	303	36	19	11	32	1.87
29561810--29561881	20	3.6	21	68	17	64	41	1	1	55	1.17
29561831--29561892	10	6.2	10	71	14	56	41	1	0	56	1.09
29561825--29561888	19	3.3	19	73	16	67	42	1	1	54	1.19
29561803--29561917	40	2.9	40	90	0	176	43	0	1	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29561830--29561894	21	3.2	21	75	16	82	43	1	0	55	1.09
29562189--29562701	6	92.2	6	72	17	122	38	11	1	48	1.48
29562214--29562421	34	6.3	35	73	17	124	37	9	0	51	1.41
29562289--29562386	5	18.4	5	72	10	52	44	5	1	48	1.31
29562221--29562312	15	6.0	15	72	18	82	35	8	1	54	1.39
29562269--29562429	23	7.3	23	73	10	90	41	9	0	48	1.40
29562334--29562826	39	12.6	38	72	11	187	38	11	1	49	1.46
29562384--29562522	45	3.0	45	72	18	115	34	16	0	48	1.52
29562290--29562477	27	6.8	26	69	13	67	40	9	1	48	1.42
29562456--29562543	45	2.0	45	81	0	104	38	15	0	45	1.47
29562669--29562721	27	2.0	26	88	3	70	41	9	1	47	1.47
29562729--29562804	22	3.4	22	77	15	68	36	6	1	55	1.34
29562214--29562812	16	36.4	17	66	19	147	38	11	1	49	1.46
29562765--29562835	33	2.2	33	82	5	81	33	11	0	54	1.36
29562370--29562809	156	2.9	156	93	4	718	38	11	1	48	1.47
29569751--29569776	4	6.5	4	100	0	52	23	0	0	76	0.78
29569961--29570052	31	2.8	32	84	12	116	28	14	9	47	1.75
29570258--29570421	59	2.8	59	83	0	193	46	13	17	22	1.82
29570319--29570444	59	2.1	59	83	2	155	46	13	15	24	1.82
29589583--29589643	3	20.0	3	93	3	104	63	1	0	34	1.04
29590996--29591042	22	2.1	22	84	4	58	27	0	19	53	1.45
29591013--29591065	18	2.8	19	71	28	58	37	0	13	49	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29594452--29594544	46	2.0	46	82	0	114	27	17	21	33	1.96
29594618--29594786	76	2.2	75	83	3	214	21	20	17	40	1.91
29594696--29596914	123	18.0	123	85	2	2774	22	20	17	39	1.92
29594874--29594968	48	2.0	48	89	0	145	21	25	17	35	1.95
29594696--29596914	247	9.0	246	85	2	2748	22	20	17	39	1.92
29595490--29595583	48	2.0	48	85	4	127	28	20	10	40	1.86
29594696--29596914	371	6.0	370	85	3	2801	22	20	17	39	1.92
29595985--29596078	48	2.0	48	91	0	152	19	22	17	41	1.90
29596356--29596450	48	2.0	48	91	0	154	21	22	16	40	1.92
29596604--29596696	48	1.9	48	86	4	134	23	21	17	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135