genome.fa.s2.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  105  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32307883--32307926	15	2.9	15	83	12	63	43	6	6	43	1.57
32319460--32319517	3	18.7	3	92	7	98	65	3	0	31	1.09
32320541--32321000	29	15.8	30	77	8	339	36	25	3	34	1.73
32320541--32320945	59	7.0	57	76	10	322	36	26	3	34	1.73
32327294--32327664	50	7.5	49	84	4	388	35	16	31	16	1.92
32327259--32327655	149	2.7	150	83	6	461	35	16	30	17	1.92
32327246--32327677	199	2.2	197	79	4	467	34	16	31	17	1.92
32328032--32328106	39	1.9	39	86	5	107	22	32	21	24	1.98
32328447--32328476	13	2.3	13	94	0	51	66	0	23	10	1.21
32329987--32330025	6	6.5	6	87	0	51	46	0	30	23	1.53
32331073--32332182	208	5.3	208	83	3	1180	36	17	22	22	1.95
32331113--32332182	415	2.6	415	81	5	1165	36	17	22	22	1.95
32332951--32333002	24	2.1	25	85	3	70	51	19	11	17	1.75
32333188--32333239	3	16.7	3	84	15	70	65	3	0	30	1.10
32334265--32334394	29	4.4	29	74	10	79	39	26	3	31	1.72
32334293--32334364	29	2.5	30	82	11	87	41	25	2	30	1.69
32334356--32334444	30	3.0	29	82	11	92	40	21	1	37	1.61
32337830--32337859	11	2.6	12	94	5	53	26	0	0	73	0.84
32339097--32339186	29	3.1	30	82	4	103	44	16	4	34	1.68
32350824--32350951	50	2.6	50	82	2	141	33	19	25	21	1.97
32351009--32351136	39	3.2	40	82	6	154	28	27	19	25	1.99
32351187--32351308	50	2.4	49	84	10	149	37	18	23	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32351236--32351333	50	2.0	50	81	4	117	37	19	22	20	1.94
32351808--32351837	11	2.6	12	94	5	53	26	0	0	73	0.84
32351834--32351883	16	3.1	16	75	18	50	72	4	2	22	1.12
32353076--32353162	30	2.9	30	83	8	115	42	14	4	37	1.67
32355387--32355543	72	2.2	72	97	0	296	33	21	12	32	1.91
32356055--32356088	12	2.7	13	90	4	52	35	8	5	50	1.58
32357671--32357711	20	2.0	21	86	13	59	51	0	2	46	1.14
32358247--32358283	13	2.8	14	84	12	51	40	0	2	56	1.13
32371704--32371779	40	1.9	40	94	0	134	34	13	14	38	1.85
32371706--32371790	40	2.1	40	82	0	98	34	17	14	34	1.90
32391216--32391273	30	1.9	30	89	0	89	41	1	5	51	1.34
32391174--32391432	143	1.8	141	86	6	380	42	3	9	44	1.52
32391866--32391903	11	3.5	11	89	3	60	44	0	0	55	0.99
32391965--32392025	6	10.0	6	81	10	61	0	54	0	45	1.00
32391969--32392022	18	2.9	18	86	2	72	0	55	0	44	0.99
32392804--32392839	11	3.4	11	88	3	56	55	0	0	44	0.99
32393680--32393731	12	4.2	12	83	13	61	0	51	0	48	1.00
32393698--32393731	6	5.5	6	86	6	50	0	58	0	41	0.98
32395707--32395818	30	3.7	31	73	13	108	29	25	21	24	1.99
32395826--32395903	33	2.4	33	89	4	113	28	19	23	29	1.98
32399137--32399196	19	3.2	19	97	0	111	23	25	18	33	1.97
32401033--32401062	15	2.0	15	100	0	60	46	6	26	20	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32401595--32401653	14	4.0	15	73	8	50	57	0	6	35	1.25
32405424--32405472	3	16.3	3	100	0	98	32	0	0	67	0.91
32410161--32410354	99	2.0	99	89	0	298	22	30	9	37	1.86
32410958--32410999	20	2.0	22	90	9	70	52	0	0	47	1.00
32410949--32411005	20	3.0	20	74	23	59	47	1	0	50	1.11
32411276--32411316	21	2.0	21	90	0	64	34	0	2	63	1.08
32420591--32420648	24	2.4	25	85	2	73	20	0	18	60	1.36
32421371--32421402	15	2.1	15	100	0	64	40	0	40	18	1.51
32439380--32439417	14	2.5	15	87	8	51	44	0	5	50	1.24
32442811--32442875	33	2.0	33	96	0	121	30	7	16	44	1.76
32446384--32446427	18	2.5	18	81	3	54	52	0	2	45	1.13
32447101--32447147	3	15.7	3	100	0	94	31	0	0	68	0.90
32449156--32449183	5	5.6	5	100	0	56	0	82	0	17	0.68
32451782--32451814	14	2.5	13	90	9	50	0	90	0	9	0.44
32453471--32453543	26	2.6	28	73	14	71	38	2	5	53	1.39
32457590--32457623	17	2.0	17	100	0	68	47	0	52	0	1.00
32457589--32457626	2	19.5	2	94	5	69	50	0	50	0	1.00
32458153--32458190	19	2.0	20	89	5	60	57	0	0	42	0.98
32458900--32458938	20	1.9	20	84	5	51	41	20	5	33	1.74
32464035--32464128	26	3.6	26	79	0	89	19	15	29	35	1.93
32464123--32464383	110	2.4	110	80	0	306	24	18	26	30	1.98
32466447--32466476	15	2.0	15	93	0	51	63	0	13	23	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32467246--32467294	22	2.2	22	82	13	57	40	20	12	26	1.87
32471509--32472047	268	2.0	272	94	1	942	26	17	20	35	1.95
32479947--32480013	15	4.8	15	73	17	54	64	10	1	23	1.34
32480479--32480541	21	2.8	22	73	17	58	42	26	6	23	1.78
32484907--32484949	22	2.0	22	85	0	59	25	41	13	18	1.88
32485902--32485985	26	3.0	29	74	10	77	23	5	7	63	1.43
32486995--32487368	59	6.4	57	79	9	348	37	3	26	32	1.73
32487041--32487547	29	17.3	29	68	21	111	37	2	25	34	1.68
32486995--32487368	58	6.4	59	79	7	356	37	3	26	32	1.73
32487033--32487522	116	4.2	117	78	7	426	37	2	26	34	1.69
32487057--32487523	59	8.0	58	75	10	260	37	2	26	34	1.68
32487348--32487562	89	2.4	88	86	3	288	36	0	25	36	1.63
32487318--32487585	30	9.1	30	76	11	207	36	1	25	36	1.65
32487348--32487575	59	3.9	60	77	12	188	36	0	24	38	1.62
32489383--32489472	6	15.3	6	70	13	62	54	2	2	41	1.25
32489387--32489474	17	5.1	17	76	10	88	54	2	2	40	1.25
32493289--32493372	38	2.2	37	82	14	93	36	1	0	61	1.04
32493214--32493384	54	3.2	53	74	17	140	37	1	2	59	1.18
32502756--32502805	19	2.6	19	80	0	55	46	20	8	26	1.78
32503148--32503269	39	3.4	38	70	20	134	44	19	3	32	1.67
32503131--32503269	69	2.0	69	100	0	278	43	20	2	33	1.66
32503554--32503604	19	2.8	18	76	5	57	27	17	17	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32504113--32504151	20	2.0	19	85	5	51	41	0	10	48	1.37
32505964--32506025	31	2.0	31	87	6	90	30	12	9	46	1.74
32506363--32506754	43	9.2	43	79	5	400	27	26	16	29	1.97
32506363--32506754	86	4.6	85	82	6	443	27	26	16	29	1.97
32506363--32506758	128	3.1	126	81	4	452	28	26	16	29	1.97
32507029--32507161	66	2.0	66	82	5	162	13	25	19	41	1.88
32514933--32515023	40	2.2	40	82	1	101	16	17	17	48	1.82
32514959--32515072	40	2.8	40	82	0	147	21	18	20	40	1.92
32519395--32519437	18	2.4	18	88	7	61	53	0	0	46	1.00
32519716--32519765	19	2.5	20	77	9	57	22	2	6	70	1.20
32523965--32523994	15	2.0	15	93	0	51	36	23	6	33	1.81
32531795--32531866	37	1.9	37	100	0	144	38	27	16	16	1.90
32533685--32533723	20	2.0	20	94	0	69	71	2	7	17	1.21
32549878--32549944	31	2.2	31	84	10	84	40	0	4	55	1.20
32550755--32550801	21	2.2	22	92	3	78	12	10	4	72	1.25
32552875--32552914	21	1.9	21	94	0	71	42	12	17	27	1.85
32553889--32553918	12	2.5	12	100	0	60	23	0	23	53	1.46
32560111--32560140	14	2.1	14	93	0	51	16	6	3	73	1.18
32560910--32560967	21	2.7	22	86	7	66	12	12	3	72	1.24
32560921--32560967	21	2.2	22	92	3	78	12	10	4	72	1.25
32566525--32566581	21	2.7	21	94	2	96	63	0	0	36	0.95
32569589--32569636	21	2.3	21	86	13	64	29	4	4	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32572925--32572996	27	2.7	27	71	16	69	55	2	37	4	1.34
32574140--32574243	39	2.5	40	76	7	102	45	2	5	46	1.42
32574137--32574211	21	3.7	19	74	10	60	48	4	5	42	1.44
32574245--32574292	24	2.0	24	87	4	69	62	0	2	35	1.07
32574281--32574354	29	2.6	29	76	8	71	63	2	2	31	1.22
32574309--32574355	19	2.5	19	80	10	60	57	2	4	36	1.30
32574580--32574623	18	2.5	17	82	17	54	79	0	0	20	0.73
32574583--32574627	17	2.6	18	82	6	58	80	0	0	20	0.72
32574594--32574630	9	3.9	10	82	10	51	81	0	0	18	0.70
32574580--32574630	19	2.8	19	82	8	61	78	0	0	21	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135