genome.fa.s2.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  121  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36511323--36511385	21	2.9	22	75	15	60	53	1	1	42	1.19
36518820--36518901	19	4.5	19	72	16	66	41	2	1	54	1.21
36521462--36521520	31	1.9	31	85	0	82	52	1	20	25	1.56
36523155--36523275	23	5.2	23	84	11	165	11	24	23	40	1.88
36523155--36523275	48	2.6	46	88	7	181	11	24	23	40	1.88
36523240--36523314	39	1.9	39	89	5	116	13	22	20	44	1.86
36524141--36524301	87	1.8	88	89	4	254	32	26	4	36	1.76
36524142--36524279	29	4.8	29	70	15	97	31	28	4	35	1.77
36524152--36524323	87	2.0	86	81	4	202	30	28	6	33	1.84
36530004--36530038	18	1.9	18	88	11	54	45	2	34	17	1.63
36533473--36533506	16	2.1	17	88	5	52	52	5	0	41	1.25
36533569--36533602	3	11.3	3	100	0	68	32	0	0	67	0.91
36540461--36540485	3	8.3	3	100	0	50	32	0	0	68	0.90
36553166--36553213	12	3.6	14	73	21	50	62	0	0	37	0.95
36556229--36556254	5	5.2	5	100	0	52	38	0	0	61	0.96
36558986--36559024	18	2.1	19	85	4	53	51	2	5	41	1.38
36559783--36559858	30	2.6	29	79	6	82	31	7	3	56	1.46
36560792--36561138	191	1.8	191	87	0	523	27	24	16	32	1.96
36569828--36570085	121	2.1	121	91	0	417	31	22	27	19	1.98
36569809--36570206	41	9.8	41	81	4	308	31	21	27	19	1.97
36571677--36571757	40	2.0	40	100	0	162	23	2	12	61	1.42
36572069--36572120	8	6.5	8	81	0	59	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36572052--36572118	12	5.1	12	83	16	80	47	1	0	50	1.10
36572055--36572120	20	3.2	20	78	4	78	43	1	0	54	1.09
36571958--36572277	163	2.0	158	88	4	471	47	8	0	43	1.39
36572217--36572323	18	5.3	21	72	17	86	47	1	0	49	1.18
36572228--36572812	18	35.1	18	63	20	103	48	1	3	46	1.27
36572531--36572685	30	4.9	30	70	12	114	49	1	2	47	1.23
36572262--36572785	48	10.9	48	92	2	809	49	0	4	45	1.27
36578329--36578485	66	2.4	66	85	2	217	43	15	24	15	1.86
36578471--36578522	21	2.5	21	90	0	77	32	21	44	1	1.63
36578810--36578965	42	3.7	43	79	5	138	23	27	25	23	2.00
36603162--36603224	31	2.0	31	81	6	74	34	3	3	58	1.30
36605092--36605130	6	6.5	6	87	0	51	23	30	0	46	1.53
36606879--36606919	21	1.9	22	90	5	66	56	0	0	43	0.99
36606881--36606949	35	2.0	35	85	5	95	49	1	2	46	1.25
36607033--36607086	23	2.3	25	81	18	71	53	3	0	42	1.18
36611066--36611105	19	2.2	19	86	4	55	55	0	0	45	0.99
36611537--36611578	19	2.2	19	87	8	59	42	2	7	47	1.43
36623305--36623396	41	2.2	41	94	0	166	34	25	9	30	1.88
36625168--36625211	23	1.9	23	86	9	63	59	6	11	22	1.55
36626706--36626758	15	3.4	16	79	10	56	33	20	9	35	1.85
36627542--36627573	16	2.0	16	93	0	55	46	18	18	15	1.84
36637022--36637054	5	6.6	5	100	0	66	21	0	39	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36637260--36637293	2	17.0	2	100	0	68	50	0	50	0	1.00
36639593--36639649	26	2.2	26	84	15	73	26	1	5	66	1.22
36639593--36639650	25	2.2	27	85	11	77	27	1	5	65	1.23
36642459--36642497	19	2.1	19	85	9	53	35	2	0	61	1.10
36651575--36651601	3	9.0	3	100	0	54	66	0	0	33	0.92
36664538--36664571	18	1.9	18	88	5	52	23	8	0	67	1.18
36687653--36687686	14	2.4	14	85	0	50	32	2	0	64	1.08
36687794--36687839	25	1.9	25	82	8	60	39	0	6	54	1.26
36699697--36699779	29	2.8	28	75	15	87	55	1	1	42	1.15
36699886--36699931	18	2.6	17	87	12	67	23	2	4	69	1.17
36699886--36699944	17	3.4	18	78	19	63	28	1	3	66	1.18
36708585--36708664	31	2.6	30	82	7	99	47	3	0	48	1.19
36708606--36708671	31	2.2	31	86	2	89	43	3	3	50	1.33
36711521--36711562	20	2.1	20	86	0	57	28	11	2	57	1.47
36713313--36713380	25	2.6	26	88	6	102	32	19	23	25	1.97
36713403--36713455	27	2.0	27	88	0	79	18	22	26	32	1.97
36714249--36714294	21	2.1	21	84	8	56	41	8	4	45	1.55
36716873--36716901	2	14.5	2	100	0	58	51	0	0	48	1.00
36718159--36718409	24	10.5	24	79	3	263	29	26	21	22	1.99
36718407--36718467	27	2.3	27	91	0	95	34	18	18	29	1.94
36723977--36724009	6	5.5	6	100	0	66	0	36	0	63	0.95
36724135--36724224	6	15.3	6	93	4	157	14	51	0	34	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36724135--36724224	41	2.2	41	97	0	171	14	51	0	34	1.43
36727299--36727342	8	5.5	8	100	0	88	72	0	0	27	0.85
36731678--36731702	2	12.5	2	100	0	50	52	0	0	48	1.00
36734444--36734481	12	3.1	12	79	20	51	26	5	0	68	1.11
36735800--36735828	3	9.7	3	100	0	58	31	0	68	0	0.89
36745460--36745541	23	3.5	23	81	5	94	31	10	18	39	1.85
36745507--36745552	23	2.0	23	83	8	58	39	10	17	32	1.84
36746866--36746916	24	2.1	24	92	0	84	35	17	11	35	1.87
36749061--36749088	3	9.3	3	100	0	56	0	32	67	0	0.91
36750865--36750908	18	2.6	18	89	7	65	36	13	2	47	1.56
36750991--36751038	3	16.0	3	100	0	96	33	0	0	66	0.92
36751079--36751105	14	1.9	14	100	0	54	70	0	7	22	1.12
36753082--36753145	23	2.8	23	87	0	65	18	26	9	45	1.80
36753883--36753919	16	2.2	17	90	9	58	56	0	0	43	0.99
36754537--36754582	20	2.3	20	82	13	60	43	6	4	45	1.49
36758256--36758330	40	1.9	39	83	5	98	46	2	17	33	1.62
36761356--36761410	18	3.0	18	78	10	58	52	0	0	47	1.00
36766608--36766678	30	2.3	31	82	4	90	59	4	8	28	1.46
36774084--36774176	48	1.9	48	81	12	111	41	1	1	55	1.14
36779606--36779699	48	2.0	48	81	12	113	41	1	1	56	1.13
36782252--36782291	19	2.1	19	95	0	71	45	15	12	27	1.82
36783186--36783254	31	2.3	31	82	9	81	27	7	18	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36790281--36790341	31	2.0	31	96	3	115	52	3	0	44	1.17
36790291--36790369	33	2.5	31	79	10	79	54	3	1	40	1.26
36790457--36790505	19	2.5	19	84	15	57	46	2	0	51	1.12
36790521--36790609	14	6.5	13	68	28	51	50	3	0	46	1.18
36790525--36790561	16	2.3	16	86	13	58	59	0	0	40	0.97
36790523--36790609	28	3.1	27	75	18	74	50	3	0	45	1.18
36790520--36790643	13	8.4	15	70	23	70	50	3	0	46	1.17
36791701--36791732	2	16.0	2	100	0	64	50	0	50	0	1.00
36806616--36806662	24	1.9	25	83	12	62	63	2	23	10	1.37
36808744--36808769	8	3.2	8	100	0	52	23	0	0	76	0.78
36810930--36811003	30	2.4	29	72	16	69	50	8	9	32	1.64
36820618--36820665	19	2.5	19	83	6	62	41	2	0	56	1.11
36820652--36820712	8	7.2	8	76	10	50	31	3	0	65	1.09
36820652--36820717	25	2.6	25	80	2	78	33	3	0	63	1.10
36820831--36820880	3	17.0	3	95	4	93	66	0	0	34	0.92
36821422--36821460	3	13.0	3	100	0	78	33	0	0	66	0.92
36821743--36821786	24	1.9	23	86	9	63	54	4	6	34	1.47
36822808--36822848	22	2.0	20	85	9	55	39	9	7	43	1.65
36829577--36829618	21	2.0	22	85	4	59	33	11	14	40	1.82
36842653--36842716	32	2.0	32	87	0	92	23	10	25	40	1.87
36858054--36858102	20	2.4	21	83	10	66	32	12	26	28	1.92
36858306--36858345	20	2.0	20	90	0	62	27	2	37	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36858311--36858354	20	2.2	20	87	0	61	25	9	36	29	1.86
36864600--36864642	21	2.0	21	100	0	86	23	0	37	39	1.55
36876675--36876702	2	14.0	2	100	0	56	0	50	0	50	1.00
36890974--36891016	7	5.9	7	89	5	50	27	6	0	65	1.18
36893785--36893823	19	2.0	21	85	10	55	30	7	25	35	1.84
36904665--36904692	13	2.2	13	100	0	56	14	25	14	46	1.82
36911568--36911641	29	2.5	31	80	8	82	50	5	1	43	1.33
36911628--36911665	8	4.9	8	84	15	53	63	0	0	36	0.95
36911628--36911669	15	2.7	16	79	20	61	61	0	0	38	0.96
36911601--36911687	45	2.0	45	81	6	106	56	2	0	41	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135