genome.fa.s2.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  123  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37197594--37197653	22	2.7	22	97	2	111	43	0	8	48	1.33
37197671--37197735	30	2.1	32	83	11	82	35	1	4	58	1.28
37197729--37197768	16	2.6	15	84	7	53	40	0	2	57	1.12
37204736--37204851	35	3.3	35	100	0	232	36	22	14	26	1.93
37211656--37211690	7	5.0	7	89	0	52	22	0	0	77	0.78
37211659--37211690	14	2.3	14	100	0	64	21	0	0	78	0.76
37216179--37216341	29	5.5	30	81	5	172	35	3	22	38	1.72
37216160--37216342	88	2.1	87	84	4	233	32	4	24	37	1.77
37216179--37216341	59	2.8	58	82	6	186	35	3	22	38	1.72
37218069--37218093	12	2.1	12	100	0	50	60	0	16	24	1.36
37220674--37221077	206	2.0	207	92	0	675	36	18	22	23	1.95
37221408--37221483	17	4.5	17	83	8	84	38	1	3	56	1.26
37221426--37221483	23	2.5	23	80	0	62	37	0	3	58	1.15
37222097--37222140	22	2.0	23	82	8	56	31	13	4	50	1.62
37225698--37225747	16	3.1	16	78	15	50	46	2	0	52	1.12
37228873--37228908	6	6.0	6	96	0	54	16	11	0	72	1.12
37233908--37233941	15	2.3	15	89	0	50	38	2	0	58	1.13
37234161--37234211	20	2.6	20	84	3	59	27	5	0	66	1.14
37234179--37234220	20	2.1	20	82	8	50	28	9	0	61	1.27
37234207--37234254	22	2.3	22	85	7	64	37	2	0	60	1.09
37234168--37234239	29	2.5	28	73	13	74	31	5	0	62	1.18
37235447--37235471	3	8.3	3	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37237658--37237724	35	1.9	35	87	0	98	35	14	19	29	1.92
37237976--37238007	16	1.9	17	93	6	57	65	6	0	28	1.16
37243948--37243986	6	6.5	6	100	0	78	0	51	15	33	1.44
37244267--37244325	16	3.8	16	70	18	52	66	0	0	33	0.92
37244286--37244371	43	1.9	46	90	6	142	60	0	3	36	1.14
37246674--37246717	22	2.0	22	82	8	54	40	2	0	56	1.11
37261831--37261884	20	2.7	19	81	13	63	35	0	3	61	1.14
37261838--37261885	21	2.3	21	82	7	62	33	0	4	62	1.14
37262971--37263002	3	10.7	3	100	0	64	34	65	0	0	0.93
37272715--37272763	20	2.4	20	80	10	55	65	6	8	20	1.41
37273331--37273373	23	1.9	23	85	4	61	51	27	2	18	1.59
37273897--37273945	15	3.3	15	74	5	55	57	4	10	28	1.50
37275539--37275729	27	6.9	27	82	7	211	48	26	12	13	1.77
37275546--37275729	57	3.3	54	83	6	224	47	26	13	13	1.78
37275546--37275729	84	2.2	84	100	0	368	47	26	13	13	1.78
37277318--37277351	17	1.9	17	88	5	50	26	0	5	67	1.13
37277307--37277353	9	5.3	9	87	5	60	21	0	10	68	1.20
37280607--37280646	17	2.4	17	88	12	57	75	0	22	2	0.93
37283482--37283512	14	2.1	15	94	5	55	9	0	6	83	0.79
37284308--37284335	12	2.3	12	100	0	56	64	7	17	10	1.47
37292104--37292164	30	2.0	30	84	12	81	49	3	0	47	1.18
37292592--37292636	6	7.0	6	80	14	54	75	2	0	22	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37293980--37294015	18	2.0	18	100	0	72	66	11	0	22	1.22
37295907--37296040	59	2.3	59	89	1	216	30	0	18	50	1.53
37303043--37303091	24	2.1	24	85	7	66	40	2	2	55	1.23
37309007--37309066	28	2.1	29	84	9	79	51	1	0	46	1.10
37319917--37319955	17	2.3	17	95	0	69	48	25	12	12	1.77
37325527--37325567	21	2.0	21	95	0	73	24	9	31	34	1.88
37328575--37328657	41	2.0	41	100	0	166	45	9	20	24	1.80
37328969--37329017	23	2.1	22	81	7	53	38	4	4	53	1.39
37329711--37329739	2	14.5	2	100	0	58	48	0	0	51	1.00
37329940--37329969	13	2.2	14	94	5	53	33	3	26	36	1.73
37330241--37330410	85	2.0	85	97	0	322	20	22	21	34	1.97
37331140--37331192	25	2.1	26	86	10	74	33	1	11	52	1.48
37336796--37336844	24	2.1	24	85	7	66	40	2	2	55	1.23
37343555--37343614	23	2.6	23	82	15	63	25	0	8	66	1.19
37343564--37343631	23	3.0	21	79	16	66	32	0	4	63	1.14
37343583--37343630	22	2.2	22	85	10	64	33	0	2	64	1.05
37344894--37344932	17	2.2	19	86	9	55	5	17	0	76	0.96
37348786--37348840	11	5.1	11	74	12	51	67	0	3	29	1.08
37348797--37348858	30	2.0	31	82	17	76	69	1	4	24	1.17
37348752--37348898	10	15.7	9	69	17	61	62	2	4	30	1.28
37348796--37348849	21	2.7	20	80	11	65	70	1	3	24	1.13
37357919--37357971	27	1.9	27	88	3	79	30	1	5	62	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37359538--37359571	11	3.0	11	87	8	50	23	0	5	70	1.09
37359631--37359674	21	2.2	20	91	4	70	31	0	13	54	1.39
37360551--37360603	22	2.4	22	90	0	88	32	32	9	26	1.88
37361074--37361129	25	2.2	27	78	18	75	71	8	0	19	1.12
37361080--37361129	25	2.1	25	88	7	77	70	10	0	20	1.16
37363445--37363636	96	2.0	96	100	0	384	28	11	19	40	1.86
37366837--37367334	247	2.0	248	98	1	964	42	13	9	34	1.77
37368195--37368219	3	8.3	3	100	0	50	0	36	64	0	0.94
37369825--37369965	71	2.0	71	94	0	246	38	7	4	49	1.51
37370040--37370091	26	2.1	25	82	7	61	38	3	11	46	1.59
37378483--37378526	2	22.0	2	95	0	79	0	47	2	50	1.13
37383231--37383429	105	1.9	105	83	6	260	29	11	11	48	1.74
37383993--37384097	23	4.6	23	84	0	129	45	23	17	13	1.83
37388259--37388379	23	5.2	23	82	11	156	11	25	23	39	1.88
37388259--37388379	48	2.6	46	87	7	172	11	25	23	39	1.88
37388344--37388417	38	1.9	39	91	2	123	12	22	21	43	1.86
37396741--37396957	51	4.2	51	84	5	283	32	15	23	28	1.95
37396741--37396931	105	1.8	102	87	5	285	31	15	24	28	1.95
37396741--37396957	105	2.1	102	85	4	283	32	15	23	28	1.95
37396765--37396985	105	2.1	105	83	3	275	35	14	21	28	1.92
37403041--37403251	30	7.1	30	73	14	163	36	5	20	36	1.76
37403040--37403246	89	2.3	87	77	12	215	37	5	20	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37404448--37404485	13	2.9	14	80	11	53	44	7	0	47	1.32
37405141--37405214	30	2.5	29	82	2	94	51	5	1	41	1.33
37405144--37405220	6	13.0	6	73	13	61	49	6	1	42	1.36
37406254--37406298	22	2.1	21	83	4	54	37	4	28	28	1.77
37407236--37407332	51	1.9	51	95	0	176	30	13	25	29	1.94
37407238--37407350	51	2.2	51	87	0	163	33	14	23	29	1.93
37409189--37409233	18	2.5	18	92	0	81	33	15	17	33	1.92
37412311--37412746	29	14.9	28	65	25	126	35	4	29	30	1.77
37412312--37412774	59	7.9	59	86	4	594	34	4	30	31	1.76
37413522--37413553	15	2.1	15	94	0	55	28	15	18	37	1.92
37414577--37414694	17	6.9	17	74	5	103	50	4	1	44	1.31
37414577--37414687	6	19.3	6	70	12	72	49	4	1	44	1.33
37420886--37420939	25	2.1	25	86	6	72	40	1	7	50	1.41
37420884--37420939	27	2.2	25	76	14	62	39	3	7	50	1.47
37421858--37421909	16	3.3	15	76	12	50	65	0	0	34	0.93
37421856--37421914	25	2.3	24	80	13	57	64	0	0	35	0.94
37422471--37422513	21	2.0	22	86	4	61	32	0	2	65	1.06
37438374--37438402	12	2.3	13	94	5	51	0	24	3	72	1.00
37439400--37439458	29	2.0	29	100	0	118	50	10	0	38	1.36
37444249--37444335	41	2.1	42	93	4	149	42	13	10	33	1.79
37456330--37456366	18	2.1	19	90	10	60	48	2	0	48	1.15
37456660--37456707	21	2.2	23	85	7	64	50	2	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37486797--37486846	23	2.3	22	83	16	68	48	2	0	50	1.12
37486797--37486852	24	2.5	23	86	13	73	48	1	0	50	1.11
37486807--37486860	24	2.2	24	81	12	67	44	1	0	53	1.11
37487110--37487152	22	2.0	21	86	4	59	34	13	4	46	1.65
37488213--37488250	19	2.1	19	90	5	60	47	0	0	52	1.00
37489752--37489800	11	4.3	11	75	10	53	38	2	0	59	1.09
37489716--37489803	35	2.5	35	86	1	113	43	2	0	54	1.12
37491319--37491534	105	2.1	105	97	0	405	43	10	6	39	1.65
37494895--37495027	70	1.9	67	83	7	169	32	11	12	44	1.77
37504610--37504658	21	2.4	21	80	12	57	51	2	0	46	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135