genome.fa.s2.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  124  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37507022--37507077	6	9.5	6	77	11	53	28	21	0	50	1.49
37507041--37507077	18	2.1	18	94	0	65	24	24	0	51	1.49
37510853--37510891	17	2.3	17	90	0	60	61	0	2	35	1.10
37518065--37518090	12	2.2	12	100	0	52	23	0	19	57	1.40
37521851--37521894	3	14.7	3	100	0	88	68	0	0	31	0.90
37522719--37522774	30	1.9	30	86	13	82	42	0	0	57	0.99
37533811--37533865	18	3.1	18	84	2	58	65	0	1	32	1.03
37539588--37539624	13	2.5	15	83	16	51	51	2	2	43	1.30
37542361--37542401	20	2.2	18	87	12	57	58	0	4	36	1.20
37545341--37545420	29	2.6	30	84	5	99	43	15	7	33	1.74
37553687--37553719	2	16.5	2	100	0	66	51	0	0	48	1.00
37561222--37561254	16	2.0	17	88	5	50	54	15	9	21	1.68
37562468--37562500	3	11.0	3	100	0	66	0	33	0	66	0.92
37571542--37571568	2	13.5	2	100	0	54	48	0	0	51	1.00
37582557--37582586	3	10.0	3	100	0	60	66	0	33	0	0.92
37583084--37583135	15	3.5	15	81	7	52	36	0	5	57	1.23
37583100--37583135	14	2.4	15	90	9	56	41	0	8	50	1.33
37587060--37587112	20	2.7	19	72	18	54	52	1	0	45	1.11
37592134--37592164	3	10.3	3	100	0	62	67	0	32	0	0.91
37595437--37595556	58	2.1	58	85	3	161	34	0	17	48	1.48
37596129--37596225	50	1.9	51	85	10	137	36	6	9	48	1.60
37597237--37597294	21	2.8	21	84	5	64	63	3	1	31	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37606010--37606204	59	3.3	59	80	8	234	35	3	28	32	1.73
37606082--37606178	29	3.3	30	68	22	87	32	2	30	34	1.70
37606021--37606195	60	3.0	60	85	8	234	34	3	30	31	1.74
37606097--37606197	29	3.4	30	72	20	95	35	0	32	30	1.65
37607265--37607312	23	2.2	21	82	10	53	43	4	0	52	1.20
37608155--37608199	16	2.7	17	86	6	65	57	2	0	40	1.11
37608170--37608219	23	2.2	24	79	17	61	54	4	0	42	1.19
37608158--37608211	27	2.0	28	85	3	74	55	5	0	38	1.23
37608177--37608219	11	3.9	11	82	8	52	53	4	0	41	1.21
37610218--37610249	16	2.0	16	93	0	55	71	0	0	28	0.86
37612285--37612347	32	2.0	32	84	6	83	42	9	7	39	1.67
37616671--37616716	25	1.9	23	86	8	65	4	21	0	73	1.00
37618119--37618162	22	2.0	23	90	4	72	43	22	4	29	1.73
37618119--37618173	22	2.5	23	85	5	60	38	25	3	32	1.73
37623756--37623838	23	3.7	23	79	11	100	55	14	2	27	1.52
37623822--37624118	55	5.6	50	83	11	289	56	18	2	22	1.54
37623754--37623919	64	2.5	67	78	11	171	57	15	3	24	1.52
37623820--37624102	110	2.7	104	87	7	376	56	17	2	22	1.54
37623880--37624109	55	4.2	55	91	2	367	56	18	2	23	1.54
37624016--37624122	43	2.5	44	82	8	139	56	21	0	21	1.48
37624034--37624116	4	19.8	4	73	17	62	54	20	1	24	1.52
37623924--37624116	9	21.3	9	72	20	100	54	19	2	22	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37624232--37624302	37	1.9	37	85	5	99	61	4	7	26	1.40
37624295--37624387	32	2.8	33	86	3	134	66	13	8	10	1.44
37624563--37624673	54	2.1	54	89	3	170	43	8	27	20	1.80
37624959--37625013	28	2.0	28	85	0	74	43	10	21	23	1.84
37626040--37626071	16	2.0	16	100	0	64	43	12	6	37	1.68
37629985--37630036	22	2.3	22	83	6	59	53	1	1	42	1.23
37636844--37636883	4	10.5	4	84	10	57	22	2	0	75	0.93
37636897--37636932	3	12.0	3	100	0	72	33	0	0	66	0.92
37638084--37638249	29	5.7	29	76	14	144	37	4	25	31	1.75
37638080--37638379	59	5.0	59	80	11	249	37	3	25	33	1.74
37638227--37638379	61	2.5	60	88	4	236	37	1	24	35	1.67
37638109--37638376	30	9.0	29	72	13	161	38	3	23	34	1.72
37639471--37639540	19	3.5	19	67	21	54	34	2	1	61	1.20
37639459--37639536	16	5.1	15	71	19	56	37	2	1	58	1.20
37639451--37639568	48	2.4	48	83	5	130	34	4	1	59	1.27
37640257--37640298	17	2.4	17	92	4	66	54	4	0	40	1.21
37644647--37644703	29	1.9	30	92	3	98	33	3	10	52	1.53
37645796--37645886	30	3.0	30	71	9	85	36	9	3	50	1.52
37645801--37645886	31	2.9	28	77	14	75	36	10	3	50	1.54
37646978--37647054	21	3.8	20	76	10	77	64	0	3	31	1.11
37646963--37647052	39	2.2	41	82	7	105	63	2	4	30	1.26
37647072--37647110	18	2.2	18	86	9	53	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37649992--37650020	13	2.2	13	100	0	58	0	13	0	86	0.58
37649978--37650020	22	1.9	23	85	4	61	4	11	2	81	0.93
37652978--37653036	28	2.1	28	100	0	118	32	10	6	50	1.62
37656706--37656743	18	2.2	18	85	4	51	15	7	0	76	1.01
37658516--37658571	24	2.3	24	87	6	78	46	8	14	30	1.75
37660498--37660560	24	2.6	24	82	0	81	47	11	14	26	1.77
37661729--37661756	5	5.6	5	100	0	56	21	0	39	39	1.54
37667597--37667643	21	2.2	22	81	11	53	42	2	0	55	1.12
37669847--37669875	4	7.2	4	100	0	58	24	0	0	75	0.80
37670667--37670693	2	13.5	2	100	0	54	51	0	0	48	1.00
37677883--37678217	122	2.7	122	84	4	433	29	15	14	40	1.87
37677883--37678220	61	5.5	62	82	8	372	28	15	14	40	1.87
37682687--37682733	17	2.6	18	90	10	78	59	4	0	36	1.17
37692869--37692895	6	4.5	6	100	0	54	51	0	33	14	1.43
37694399--37694437	20	1.9	21	89	5	62	53	17	7	20	1.68
37697753--37697803	21	2.7	19	80	17	61	58	0	0	41	0.98
37699030--37699080	21	2.3	22	80	13	59	50	11	5	31	1.62
37699037--37699079	21	2.0	23	86	9	63	51	11	4	32	1.59
37698981--37699068	45	2.0	45	88	6	135	50	17	5	27	1.68
37704395--37704453	27	2.2	27	84	0	73	6	74	3	15	1.16
37704391--37704450	15	4.0	15	76	8	59	6	75	5	13	1.18
37725595--37725623	2	14.5	2	100	0	58	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37725901--37725943	6	7.2	6	100	0	86	16	32	0	51	1.45
37727822--37727881	14	4.4	14	73	12	52	40	23	8	28	1.83
37728618--37728657	18	2.2	18	86	0	53	75	12	7	5	1.18
37730759--37730853	30	3.2	30	93	0	154	57	14	4	23	1.54
37730924--37730972	21	2.3	21	85	3	62	77	8	4	10	1.10
37731189--37731254	23	2.8	23	82	11	89	24	24	18	33	1.97
37731181--37731250	23	3.0	23	78	15	81	25	25	17	31	1.97
37743234--37743302	28	2.4	28	80	11	77	46	7	10	36	1.65
37743746--37743785	20	2.1	19	85	4	53	55	2	0	42	1.13
37743742--37743814	19	3.9	19	73	8	60	50	2	0	46	1.15
37743798--37743835	18	2.2	18	86	13	53	36	2	0	60	1.11
37762232--37762272	21	2.0	21	85	0	55	26	9	9	53	1.65
37764866--37764965	50	2.0	50	94	3	175	18	18	32	32	1.94
37768421--37768466	24	1.9	23	86	8	65	56	6	4	32	1.45
37785119--37785173	28	1.9	29	85	3	76	30	0	3	65	1.10
37791475--37791560	24	3.7	24	78	6	104	10	4	15	69	1.32
37791457--37791560	34	3.0	35	81	4	111	10	5	15	68	1.37
37791434--37791555	46	2.7	44	79	9	131	11	4	15	68	1.37
37791457--37791560	12	8.8	12	74	7	70	10	5	15	68	1.37
37791688--37791779	49	1.9	48	82	8	116	27	0	8	64	1.23
37801214--37801296	40	2.1	40	100	0	166	36	7	13	43	1.71
37816734--37816804	29	2.4	30	80	4	90	32	8	19	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37818220--37818626	61	6.8	58	77	12	373	31	20	15	32	1.94
37818222--37818583	117	3.1	114	80	10	365	31	20	15	32	1.94
37818221--37818626	179	2.3	179	84	5	534	31	20	15	33	1.93
37819250--37819402	57	2.6	61	83	9	201	30	13	22	33	1.93
37820990--37821019	15	2.1	15	93	6	53	0	6	10	83	0.81
37824970--37825047	41	1.9	40	82	7	95	52	1	11	34	1.46
37828024--37828112	31	2.9	32	80	6	112	42	6	21	29	1.78
37832729--37832775	25	1.9	24	91	4	76	36	2	0	61	1.08
37832728--37832783	25	2.2	26	81	9	71	37	1	0	60	1.07
37834460--37834506	19	2.5	19	82	6	51	55	8	4	31	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135