genome.fa.s2.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  82  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25332183--25332253	30	2.5	25	74	25	70	43	1	1	53	1.18
25333198--25333232	3	11.7	3	100	0	70	68	0	0	31	0.90
25333829--25333961	70	1.9	67	85	7	178	30	10	14	44	1.79
25335958--25336021	24	2.7	24	87	0	92	26	14	9	50	1.73
25337917--25337980	24	2.7	24	85	0	83	28	14	7	50	1.70
25346532--25346676	63	2.3	63	84	6	188	36	28	4	30	1.78
25346532--25346703	63	2.7	62	82	9	172	34	29	5	30	1.81
25347660--25347707	23	2.1	23	100	0	96	31	12	20	35	1.90
25359681--25359721	11	3.7	11	83	9	57	70	17	4	7	1.28
25359671--25359720	22	2.3	22	86	10	68	66	20	6	8	1.40
25360194--25360245	6	8.5	6	82	4	59	61	15	3	19	1.48
25360211--25360301	47	1.9	47	84	0	119	56	14	6	23	1.62
25363034--25363061	13	2.2	13	100	0	56	46	14	39	0	1.44
25374233--25374265	16	2.1	16	100	0	66	30	27	6	36	1.81
25374450--25374544	44	2.1	46	86	7	133	32	5	25	36	1.78
25374677--25374748	38	1.9	37	91	2	117	47	2	0	50	1.15
25374696--25374775	39	2.1	38	81	6	90	51	1	2	45	1.22
25377739--25377794	24	2.3	24	81	0	67	50	14	8	26	1.72
25382250--25382350	36	2.8	36	84	1	132	36	23	11	27	1.90
25382437--25383034	23	26.1	23	85	2	747	47	13	5	32	1.66
25384844--25384881	3	12.7	3	100	0	76	68	0	0	31	0.90
25386501--25386867	50	7.3	49	69	10	202	27	20	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25386501--25386926	101	4.2	101	84	3	520	27	19	17	34	1.95
25386543--25386910	51	7.3	51	70	6	230	27	20	17	34	1.95
25386526--25386931	202	2.0	202	87	3	577	27	19	17	35	1.94
25400294--25400348	3	18.3	3	100	0	110	67	0	0	32	0.91
25410168--25410200	15	2.1	16	88	5	50	60	21	0	18	1.36
25411132--25411204	28	2.7	27	73	12	76	45	2	2	49	1.31
25416713--25416786	26	2.9	25	86	6	96	31	25	4	39	1.74
25420136--25420185	12	4.2	12	81	0	55	62	0	36	2	1.07
25430982--25431021	21	1.9	21	100	0	80	37	15	7	40	1.75
25440364--25440397	17	2.1	17	88	5	52	50	14	0	35	1.44
25440726--25440819	38	2.5	37	77	8	100	28	26	15	28	1.96
25443996--25444037	16	2.7	15	85	10	50	80	0	14	4	0.86
25445410--25445440	16	1.9	16	93	0	53	22	16	0	61	1.34
25456136--25456189	27	1.9	28	88	7	83	51	1	7	38	1.41
25456223--25456254	12	2.7	12	95	0	55	56	18	0	25	1.42
25456378--25456437	30	1.9	33	86	10	90	65	3	8	23	1.36
25456445--25456536	4	23.8	4	69	20	54	75	4	1	19	1.04
25456427--25456536	11	10.3	10	71	20	55	73	4	1	20	1.10
25456443--25456491	19	2.6	19	87	6	73	81	4	0	14	0.83
25456441--25456529	46	2.0	43	85	10	117	75	4	1	19	1.04
25457415--25457439	6	4.2	6	100	0	50	32	0	0	68	0.90
25458316--25458439	50	2.4	51	79	9	146	29	12	20	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25458332--25458428	51	1.9	50	89	4	149	25	13	20	40	1.89
25458382--25458682	102	3.0	100	81	6	354	25	19	20	34	1.96
25458614--25458724	50	2.2	50	93	0	186	23	23	21	31	1.98
25458528--25458841	152	2.1	152	85	0	421	26	20	21	32	1.97
25459402--25459456	19	2.8	19	75	8	58	50	12	14	21	1.76
25459409--25459502	19	4.9	20	73	12	81	51	11	15	21	1.75
25459437--25459492	18	2.9	19	76	10	60	53	12	16	17	1.73
25459430--25459509	20	4.1	20	76	9	76	51	11	16	21	1.75
25464707--25464756	18	2.8	17	82	14	57	74	4	2	20	1.08
25464741--25464801	20	3.2	20	73	13	56	72	3	1	22	1.09
25464902--25464947	13	3.6	14	80	16	55	67	0	6	26	1.15
25466662--25466820	50	3.1	50	64	15	119	30	22	14	32	1.93
25466662--25467130	102	4.6	101	80	6	358	26	20	19	33	1.97
25466662--25467128	204	2.3	204	83	2	562	26	20	19	33	1.96
25466976--25467167	50	3.8	50	73	5	179	22	22	22	32	1.98
25466561--25467122	306	1.8	303	80	6	659	26	19	19	34	1.96
25466976--25467289	152	2.1	152	87	0	448	25	20	21	32	1.98
25467856--25467904	20	2.5	19	83	3	71	46	14	14	24	1.81
25468260--25468289	13	2.2	13	94	5	51	16	0	0	83	0.65
25471681--25471768	11	8.6	10	70	23	51	70	4	1	23	1.13
25482598--25482644	22	2.2	21	84	3	58	61	12	10	14	1.56
25483029--25483063	18	2.0	17	88	5	52	57	2	0	40	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25499527--25499677	71	2.2	70	88	5	218	32	8	13	45	1.75
25516133--25516327	42	4.6	42	82	4	171	27	26	10	35	1.89
25516181--25516327	43	3.5	42	85	4	174	26	26	10	36	1.89
25537114--25537188	18	4.4	17	74	15	57	72	2	4	21	1.14
25538251--25538786	100	5.4	100	72	10	319	27	17	17	37	1.93
25538221--25538772	200	2.8	197	80	6	587	26	17	17	38	1.92
25538155--25538814	50	13.2	50	66	11	201	26	18	18	36	1.94
25539003--25539027	9	2.8	9	100	0	50	36	0	32	32	1.58
25544872--25544926	22	2.5	22	79	5	67	69	5	0	25	1.10
25545722--25545954	113	2.1	113	97	0	439	30	3	22	43	1.69
25551013--25551040	2	14.0	2	100	0	56	0	0	50	50	1.00
25551801--25552035	84	2.8	81	81	5	299	28	12	11	47	1.77
25551801--25552035	83	2.8	84	82	6	300	28	12	11	47	1.77
25553227--25553322	7	13.9	7	71	5	52	20	19	23	35	1.96
25553227--25553321	14	6.9	14	73	10	63	21	18	24	35	1.95
25564936--25564968	15	2.1	16	88	5	50	60	21	0	18	1.36
25565900--25565972	28	2.7	27	73	12	76	45	2	2	49	1.31
25571480--25571553	26	2.9	25	86	6	96	31	25	4	39	1.74
25577285--25577391	37	2.9	37	80	6	112	49	7	10	32	1.65
25579507--25579539	11	3.0	11	90	0	57	33	0	3	63	1.10
25582864--25582911	4	12.5	4	79	16	57	22	4	0	72	1.01
25584353--25584385	11	3.0	11	90	0	57	33	0	3	63	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25587314--25587345	14	2.3	14	94	0	55	34	9	9	46	1.68
25587838--25587932	40	2.3	41	80	10	115	32	7	13	46	1.71
25587847--25587922	20	3.8	20	86	5	102	32	7	14	44	1.74
25590122--25590528	23	17.7	23	89	0	562	33	5	12	47	1.65
25590122--25590528	69	5.9	69	92	1	654	33	5	12	47	1.65
25600587--25600764	88	2.0	88	95	0	320	34	15	10	39	1.81
25602243--25602459	30	7.3	30	82	9	214	42	1	17	37	1.61
25602276--25602459	60	3.1	60	90	0	287	41	2	17	38	1.62
25602284--25602479	90	2.2	88	76	11	191	39	3	17	39	1.66
25603302--25603331	9	3.3	9	100	0	60	10	0	10	80	0.92
25604163--25604195	12	2.8	12	86	4	50	39	0	3	57	1.14
25604202--25604260	6	9.8	6	75	14	59	55	0	3	40	1.16
25604191--25604260	17	4.4	16	80	12	81	52	0	4	42	1.20
25604209--25604271	11	5.9	11	75	14	60	57	1	3	38	1.24
25604613--25604986	205	1.8	204	87	2	554	20	22	19	36	1.95
25604830--25605120	134	2.2	134	91	1	467	21	24	18	35	1.95
25604626--25605325	340	2.1	337	88	2	1021	21	22	19	36	1.95
25604964--25605416	205	2.2	206	88	2	660	20	21	20	36	1.95
25605799--25606157	49	7.2	49	79	6	303	12	27	21	38	1.90
25605799--25606157	98	3.6	98	80	5	346	12	27	21	38	1.90
25605924--25606266	101	3.4	99	84	1	407	12	26	22	38	1.90
25605826--25606259	50	8.7	50	78	4	335	12	27	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25607182--25607247	10	6.4	9	75	19	51	1	16	1	80	0.87
25607195--25607247	6	8.7	6	76	19	56	1	18	0	79	0.83
25607195--25607247	13	4.3	12	77	17	56	1	18	0	79	0.83
25607198--25607247	19	2.6	19	83	0	64	2	20	0	78	0.86
25607192--25607247	16	3.5	15	79	18	60	1	17	0	80	0.80
25607310--25607427	59	2.0	59	96	0	218	23	27	12	35	1.92
25612379--25612523	29	4.9	28	81	9	164	40	0	22	36	1.60
25612373--25612530	59	2.7	59	84	5	203	39	1	24	34	1.66
25612378--25612539	30	5.4	29	75	15	102	39	3	20	36	1.69
25614217--25614249	12	2.8	12	86	4	50	39	0	3	57	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135