genome.fa.s2.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  42  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10792335--10792410	30	2.5	30	89	4	91	21	2	17	59	1.49
10792511--10792549	13	3.2	13	78	14	55	58	5	0	35	1.20
10792512--10792553	11	3.3	13	80	16	52	59	4	0	35	1.19
10793602--10793656	22	2.5	22	79	5	58	40	1	0	58	1.09
10799907--10799961	24	2.3	24	84	3	67	41	18	16	23	1.89
10807230--10807268	6	6.5	6	87	0	51	46	0	30	23	1.53
10808394--10808433	19	2.1	19	86	9	55	57	0	2	40	1.12
10814845--10814878	8	4.0	8	85	14	50	58	0	0	41	0.98
10816559--10817550	459	2.1	460	80	6	1108	31	8	27	32	1.87
10830656--10830689	12	2.8	12	86	0	50	73	0	14	11	1.10
10840767--10840807	21	1.9	22	85	5	57	60	4	21	12	1.50
10848787--10848829	19	2.5	17	85	14	61	79	0	0	20	0.74
10849156--10849185	12	2.5	12	94	0	51	76	0	10	13	1.01
10861858--10861933	17	4.5	17	75	15	68	42	1	6	50	1.37
10863538--10863875	162	2.1	162	96	0	613	27	17	11	43	1.84
10863949--10864215	29	9.2	29	71	19	175	34	27	2	35	1.71
10863948--10864302	59	6.1	59	85	7	456	33	28	3	34	1.75
10863949--10864292	29	11.8	28	68	23	160	33	28	3	34	1.74
10876315--10876722	51	8.4	50	76	16	419	36	18	18	26	1.94
10876360--10876850	92	5.3	92	69	18	300	35	18	18	27	1.94
10876209--10876815	143	4.3	143	95	1	1048	35	19	18	26	1.95
10876778--10877236	76	6.1	76	95	1	771	35	15	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10876778--10877236	151	3.0	151	94	1	796	35	15	16	32	1.90
10876778--10877236	227	2.0	226	92	1	767	35	15	16	32	1.90
10876950--10877224	38	7.3	38	64	19	135	34	14	17	33	1.90
10877497--10877586	17	5.3	16	71	7	54	44	1	5	48	1.33
10877497--10877586	6	15.8	6	67	19	50	44	1	5	48	1.33
10879266--10879485	29	7.5	28	69	19	87	35	26	2	35	1.69
10879236--10879592	59	6.1	59	87	5	499	34	29	3	33	1.73
10879556--10879630	38	2.0	38	81	0	87	30	24	8	37	1.84
10885050--10885093	17	2.6	17	77	0	52	18	25	29	27	1.98
10887240--10887277	19	2.0	19	94	0	67	36	7	21	34	1.82
10889673--10889779	43	2.3	50	75	23	147	32	25	15	26	1.96
10889688--10889989	43	7.1	43	81	9	264	31	28	14	25	1.95
10889688--10889981	86	3.5	87	83	8	356	31	27	14	26	1.95
10892903--10892942	18	2.2	19	86	8	57	47	2	2	47	1.29
10893372--10893414	21	2.0	23	86	9	63	41	18	0	39	1.51
10894365--10894756	41	9.6	41	85	1	466	17	31	21	29	1.96
10894571--10894680	24	5.2	24	63	28	77	14	34	23	27	1.94
10899306--10899467	67	2.4	67	82	0	180	15	29	24	30	1.95
10902055--10902149	40	2.3	40	90	1	145	31	4	17	46	1.68
10907190--10907342	75	2.0	75	98	0	297	31	18	8	41	1.80
10909934--10909982	27	1.9	25	84	12	64	22	24	0	53	1.47
10923173--10923236	30	2.1	30	82	5	76	62	10	6	20	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10929632--10929783	78	1.9	78	100	0	304	48	7	7	37	1.59
10929961--10930003	18	2.4	18	88	7	61	53	0	0	46	1.00
10930569--10930603	17	1.9	17	88	11	52	28	5	0	65	1.15
10931466--10931495	7	4.1	7	95	4	51	53	0	43	3	1.17
10936152--10936221	27	2.6	27	75	8	72	60	4	1	34	1.25
10942991--10943032	3	14.0	3	100	0	84	33	0	0	66	0.92
10950533--10950599	21	3.2	22	77	10	61	70	16	2	10	1.28
10950592--10950625	12	2.8	12	86	0	50	70	14	5	8	1.31
10951418--10951466	19	2.5	19	90	3	71	36	0	6	57	1.24
10957134--10957266	66	2.0	66	100	0	266	27	19	25	27	1.99
10960378--10960411	17	2.0	17	88	11	52	41	20	0	38	1.53
10963047--10963077	15	2.1	15	93	0	53	83	3	0	12	0.75
10975502--10975742	87	2.8	88	85	4	321	26	15	24	33	1.95
10982588--10982772	87	2.1	87	87	2	264	27	14	24	32	1.94
10986662--10986688	10	2.7	10	100	0	54	81	0	11	7	0.87
10986672--10986698	14	1.9	14	100	0	54	81	0	11	7	0.87
10996959--10997136	85	2.1	85	98	0	347	25	14	23	36	1.93
10997611--10997739	42	3.1	42	100	0	258	21	11	17	49	1.78
10998025--10998061	6	6.2	6	96	0	56	10	0	37	51	1.37
10999145--10999169	5	5.0	5	100	0	50	60	0	0	40	0.97
11000280--11000335	23	2.3	24	75	6	60	58	3	8	28	1.45
11002251--11002304	24	2.3	23	87	3	81	50	12	9	27	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11004394--11004448	22	2.5	21	80	13	67	10	29	14	45	1.79
11008935--11008993	31	1.9	31	96	0	109	45	6	8	38	1.61
11019942--11019984	14	2.9	14	78	21	52	48	4	0	46	1.22
11022061--11022116	27	2.1	27	100	0	112	39	14	3	42	1.63
11023508--11023645	72	1.9	70	94	2	240	28	5	28	38	1.78
11025203--11025264	6	10.7	6	87	6	74	54	4	0	40	1.22
11025203--11025264	17	3.6	17	84	4	72	54	4	0	40	1.22
11025203--11025264	29	2.1	29	87	0	88	54	4	0	40	1.22
11025239--11025281	18	2.4	18	80	3	52	60	9	0	30	1.28
11025588--11026258	209	3.2	209	92	1	1087	22	23	18	35	1.96
11034556--11034835	29	9.6	29	80	10	182	36	3	25	34	1.75
11034610--11034990	29	12.9	31	81	8	313	35	2	25	35	1.69
11034610--11034990	58	6.5	59	82	8	379	35	2	25	35	1.69
11036744--11036798	6	9.7	6	86	11	71	54	3	0	41	1.18
11036744--11036794	17	3.1	17	83	10	70	52	3	0	43	1.19
11036761--11036805	22	2.0	22	82	0	54	57	6	0	35	1.25
11044517--11044557	19	2.2	19	90	0	64	43	9	4	41	1.59
11055852--11055986	59	2.2	60	84	2	173	27	14	11	46	1.79
11057283--11057324	13	3.1	14	86	10	52	47	7	9	35	1.64
11059284--11059432	32	5.2	27	69	21	90	51	0	1	46	1.14
11059284--11059438	58	2.6	59	86	9	201	51	0	1	46	1.13
11059284--11059429	29	5.0	29	68	22	92	51	0	1	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11059403--11059453	24	2.1	24	82	10	59	56	0	5	37	1.23
11075079--11075132	8	7.6	7	78	17	58	79	0	20	0	0.73
11075079--11075132	21	2.6	21	85	5	74	79	0	20	0	0.73
11075079--11075134	27	2.0	27	89	6	85	76	0	23	0	0.78
11076058--11076233	50	3.5	50	86	3	221	37	17	23	21	1.94
11076094--11076255	50	3.2	51	79	8	181	38	19	20	20	1.93
11076288--11076698	80	5.2	80	90	0	610	32	21	18	27	1.96
11076288--11076859	119	4.8	121	76	8	497	33	21	17	27	1.96
11076288--11076739	159	2.8	158	86	3	613	32	21	18	27	1.97
11076629--11076983	80	4.4	80	86	2	428	32	20	18	28	1.96
11076412--11076978	279	2.0	278	89	1	859	32	20	17	28	1.96
11076288--11076779	239	2.1	239	84	5	620	32	21	17	27	1.96
11076509--11076921	199	2.1	198	87	2	594	34	20	18	26	1.96
11079009--11079046	19	2.0	19	85	10	51	60	0	2	36	1.11
11079009--11079064	28	2.0	27	83	10	69	60	0	1	37	1.07
11079009--11079064	27	2.0	28	83	10	71	60	0	1	37	1.07
11079377--11079418	22	2.0	21	86	13	61	73	0	2	23	0.94
11081898--11082280	28	13.7	28	78	8	368	27	18	21	32	1.97
11081897--11082280	84	4.6	84	80	6	411	27	19	21	32	1.97
11082413--11082554	37	3.8	37	80	5	144	38	21	19	19	1.93
11082413--11082574	37	4.4	36	78	9	132	37	20	20	21	1.95
11082413--11082574	74	2.2	74	83	2	200	37	20	20	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11084994--11085029	17	2.1	18	90	10	58	69	2	0	27	1.02
11085100--11085139	21	2.0	21	90	5	64	47	2	0	50	1.14
11085351--11085548	99	2.0	99	100	0	396	34	26	17	22	1.95
11088960--11089023	24	2.7	24	79	13	69	59	1	4	34	1.28
11089387--11089445	22	2.7	22	78	5	66	45	5	0	49	1.24
11091314--11091565	30	8.4	30	84	5	296	34	25	1	37	1.68
11091314--11091596	89	3.1	89	85	5	338	34	25	2	37	1.68
11091341--11091596	29	8.6	29	79	9	205	34	26	1	37	1.64
11096819--11097320	259	1.9	258	97	0	959	35	18	20	25	1.96
11097573--11097604	11	2.9	11	95	0	55	87	0	9	3	0.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135