genome.fa.s2.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  37  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9459555--9459970	149	2.8	148	76	6	399	18	29	16	34	1.93
9459516--9459977	99	4.7	100	73	7	334	18	29	17	34	1.94
9460197--9460233	17	2.2	17	100	0	74	29	10	16	43	1.82
9486512--9486572	6	10.5	6	76	13	65	44	1	0	54	1.10
9486512--9486572	17	3.6	16	86	10	77	44	1	0	54	1.10
9486503--9486569	11	6.0	11	74	8	55	43	1	1	53	1.19
9487316--9487365	19	2.9	17	82	8	57	66	2	0	32	1.03
9487311--9487362	16	3.2	16	73	13	52	61	1	0	36	1.07
9487316--9487365	26	1.9	26	88	8	75	66	2	0	32	1.03
9488455--9488705	29	8.6	28	69	14	134	32	23	3	39	1.72
9488481--9488573	28	3.2	28	73	11	89	33	22	4	39	1.74
9488450--9488706	58	4.4	57	83	4	293	32	24	3	39	1.74
9488450--9488739	116	2.5	118	84	6	358	31	24	5	38	1.77
9488597--9488879	59	4.8	56	75	12	205	31	23	5	39	1.78
9491514--9491561	21	2.3	22	82	10	64	8	41	4	45	1.53
9521561--9521603	15	2.8	16	86	10	54	30	25	6	37	1.82
9528235--9528271	5	7.8	5	87	6	51	21	0	0	78	0.75
9528235--9528270	13	2.6	14	91	8	56	22	0	0	77	0.76
9528236--9528271	18	1.9	19	94	5	65	22	0	0	77	0.76
9548804--9548858	16	3.3	16	78	14	58	50	16	3	29	1.62
9552931--9552957	7	3.9	7	100	0	54	14	25	14	44	1.84
9553847--9553971	58	2.2	58	86	5	173	48	1	1	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9554141--9554178	16	2.4	16	90	0	58	31	28	0	39	1.57
9554550--9554692	73	1.9	74	81	8	175	35	12	5	46	1.65
9565510--9566171	332	2.0	332	95	0	1180	21	19	26	32	1.97
9568220--9568356	70	2.0	70	89	0	211	40	16	8	35	1.79
9569705--9569766	28	2.2	28	82	5	72	25	9	32	32	1.88
9569732--9569945	59	3.7	59	79	12	203	37	4	24	33	1.75
9569705--9569822	28	4.1	28	67	14	69	31	5	28	33	1.81
9569839--9570259	29	14.6	28	73	18	203	35	3	24	37	1.71
9569948--9570279	29	11.5	30	76	12	223	34	3	24	38	1.71
9569833--9570179	59	6.0	59	76	11	233	34	2	25	36	1.71
9570003--9570171	80	2.1	80	83	7	211	33	1	27	37	1.67
9569976--9570179	109	1.9	111	88	2	313	32	1	26	38	1.68
9570135--9570331	89	2.2	89	82	7	222	36	5	20	37	1.77
9570146--9570316	60	2.8	59	77	6	166	38	5	19	37	1.74
9572211--9572314	6	17.8	6	73	19	87	51	0	2	44	1.22
9572211--9572285	17	4.7	16	87	11	109	52	0	4	44	1.20
9572211--9572319	11	10.0	11	74	18	68	52	0	2	44	1.21
9572223--9572281	31	1.9	31	93	6	102	54	0	5	40	1.23
9572211--9572302	17	5.6	17	83	8	102	53	0	3	43	1.17
9572279--9572322	23	2.0	22	86	4	61	54	2	0	43	1.12
9573690--9573817	54	2.4	54	88	6	188	27	7	15	50	1.70
9576404--9576535	39	3.4	39	80	8	119	28	21	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9576520--9576625	39	2.7	39	88	0	158	19	15	23	41	1.89
9582575--9582825	24	10.5	24	78	0	187	36	15	26	21	1.93
9582532--9582832	72	4.2	72	82	0	323	36	14	25	23	1.93
9582532--9582832	48	6.3	48	80	2	284	36	14	25	23	1.93
9588970--9589010	3	13.7	3	100	0	82	68	31	0	0	0.90
9589009--9589053	3	15.0	3	100	0	90	66	0	0	33	0.92
9589410--9589608	24	8.3	24	75	5	170	35	14	28	22	1.93
9589398--9589608	48	4.4	48	83	3	255	35	14	27	22	1.93
9591940--9592175	52	4.5	52	96	0	427	25	15	23	35	1.94
9592124--9592249	62	2.0	62	81	6	148	31	15	20	31	1.94
9615723--9615760	19	2.0	20	94	5	69	13	10	0	76	1.02
9616213--9616245	15	2.2	15	89	10	50	66	0	0	33	0.92
9616819--9616907	20	4.2	20	72	18	74	57	2	0	40	1.11
9616819--9616955	9	14.8	9	70	13	73	56	2	2	38	1.23
9616819--9616910	44	2.2	43	83	11	111	55	2	0	42	1.12
9616819--9616938	64	1.9	64	81	13	149	55	1	2	40	1.23
9616817--9616954	10	13.6	10	68	20	56	57	2	2	38	1.23
9618316--9618374	24	2.5	24	83	5	66	30	5	8	55	1.51
9620306--9620368	24	2.6	24	79	0	72	23	14	12	49	1.78
9628931--9629304	49	7.7	48	70	9	231	40	18	22	17	1.91
9628935--9629368	98	4.4	97	82	2	478	41	18	21	18	1.91
9628935--9629368	196	2.2	195	84	3	541	41	18	21	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9643330--9643667	49	6.9	49	74	7	285	40	19	23	16	1.91
9643285--9643711	98	4.4	97	86	3	554	39	19	23	18	1.92
9659068--9659145	23	3.4	23	89	0	111	30	26	20	21	1.98
9662412--9662437	10	2.6	10	100	0	52	53	0	38	7	1.30
9671586--9671652	26	2.6	26	90	0	98	23	23	28	23	2.00
9671517--9671695	95	1.9	95	86	0	259	23	22	29	24	1.99
9671612--9671925	158	2.0	158	88	0	466	30	22	22	23	1.99
9674976--9675037	18	3.4	18	71	4	52	40	4	30	24	1.76
9676255--9676302	22	2.2	22	84	0	60	41	22	12	22	1.88
9687899--9687978	39	2.0	40	90	2	126	28	20	18	32	1.96
9692852--9692931	39	2.0	40	90	2	126	28	21	18	31	1.97
9701466--9701576	50	2.2	51	81	1	125	39	12	18	29	1.87
9701479--9701576	25	3.9	25	80	1	97	39	13	17	29	1.87
9701573--9701612	21	1.9	21	89	0	62	35	25	12	27	1.92
9701759--9701940	16	11.4	16	81	0	211	22	32	19	25	1.98
9701757--9701940	32	5.8	32	85	0	242	23	32	19	25	1.98
9701750--9701939	48	4.0	48	85	0	236	23	31	20	25	1.98
9701734--9701963	16	14.1	16	77	5	77	25	29	20	25	1.99
9703320--9703366	22	2.2	22	88	3	69	74	2	6	17	1.12
9703346--9703375	15	1.9	16	93	6	53	66	0	13	20	1.24
9705139--9705505	30	12.5	30	66	19	107	34	2	29	32	1.73
9705118--9705542	59	7.3	59	86	3	511	34	2	29	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9705118--9705542	117	3.6	116	86	4	534	34	2	29	33	1.71
9705499--9705555	30	2.0	28	86	13	80	35	1	28	35	1.68
9705465--9705569	30	3.6	29	73	20	78	34	2	27	35	1.72
9707326--9707398	6	12.8	6	69	21	50	53	1	1	43	1.17
9707327--9707395	17	4.1	16	83	12	77	53	1	1	43	1.18
9707343--9707398	11	5.0	11	82	4	67	55	1	1	41	1.21
9707329--9707395	34	2.0	34	85	5	91	55	1	1	41	1.18
9707725--9707767	19	2.3	19	84	8	52	58	4	0	37	1.19
9708419--9708458	20	2.0	20	90	0	62	30	10	27	32	1.89
9708426--9708470	20	2.2	20	88	0	63	31	13	26	28	1.94
9708671--9708731	17	3.6	17	84	0	77	29	11	16	42	1.83
9708733--9708774	18	2.4	17	88	8	57	23	9	16	50	1.75
9708748--9708817	18	3.9	18	82	0	86	28	12	12	45	1.79
9709436--9709552	62	1.9	61	86	5	166	51	4	2	41	1.35
9709531--9709579	20	2.7	18	77	22	57	51	4	2	42	1.32
9714183--9714246	20	3.4	18	80	6	74	59	0	3	37	1.13
9714186--9714245	10	6.4	9	84	5	59	58	0	3	38	1.15
9714427--9714512	10	8.6	9	77	16	57	40	1	1	56	1.14
9714432--9714512	31	2.6	31	81	12	96	41	1	1	55	1.15
9714432--9714510	21	3.8	20	77	15	72	41	1	1	55	1.16
9714530--9714595	32	2.1	32	83	8	82	27	13	19	39	1.89
9716963--9717006	22	2.2	20	88	12	63	36	18	0	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9718347--9718405	29	2.0	29	100	0	118	32	33	10	23	1.88
9730074--9730102	6	4.8	6	100	0	58	65	17	0	17	1.27
9730700--9730771	29	2.5	28	84	8	83	41	9	19	29	1.83
9731387--9731501	53	2.2	53	87	3	160	29	33	13	22	1.93
9734014--9734092	19	4.2	19	78	0	68	32	17	21	27	1.96
9740927--9740985	18	3.2	18	83	4	73	23	22	27	27	1.99
9740941--9740988	19	2.6	19	90	3	71	25	18	25	31	1.98
9745711--9745751	3	13.7	3	100	0	82	31	0	0	68	0.90
9746198--9746653	155	2.9	155	91	0	716	20	25	25	28	1.99
9748480--9748535	22	2.5	22	77	13	60	55	3	0	41	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135