genome.fa.s2.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  59  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17232471--17232533	29	2.2	29	88	0	90	23	22	22	31	1.98
17234218--17234296	24	3.3	24	90	0	131	26	25	22	25	2.00
17238861--17239621	378	2.0	379	93	0	1299	27	19	22	30	1.98
17253347--17253484	56	2.5	56	87	2	197	36	16	21	26	1.94
17253611--17253701	29	3.1	28	76	7	92	16	12	26	45	1.82
17253664--17253728	29	2.2	30	81	8	71	20	12	23	44	1.84
17253611--17253728	59	2.0	59	80	6	132	17	11	26	44	1.82
17254429--17254461	14	2.4	14	100	0	66	30	15	21	33	1.94
17254429--17254469	14	2.9	14	92	0	55	31	12	19	36	1.89
17257137--17257180	22	2.0	21	87	12	63	54	0	0	45	0.99
17258205--17258246	22	1.9	22	85	0	57	42	2	7	47	1.43
17259028--17259098	31	2.3	31	95	0	124	35	2	0	61	1.10
17259036--17259089	17	3.4	17	65	15	51	35	1	0	62	1.06
17259135--17259177	18	2.4	18	80	0	50	32	9	2	55	1.44
17260138--17260247	10	11.5	10	69	18	58	61	3	0	33	1.19
17260138--17260247	19	5.8	19	69	16	68	61	3	0	33	1.19
17260163--17260247	10	9.0	9	73	14	73	62	4	1	31	1.23
17260213--17260251	21	1.9	20	89	5	60	66	2	0	30	1.05
17261425--17262016	295	2.0	295	100	0	1184	38	18	15	27	1.91
17264214--17264327	49	2.3	49	87	3	158	41	20	17	21	1.91
17271368--17271480	56	2.0	56	100	0	226	36	21	12	30	1.90
17271871--17271927	23	2.5	23	88	2	89	42	22	26	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17278986--17279224	82	2.9	82	96	0	433	30	20	23	25	1.99
17283522--17283566	20	2.2	20	84	7	56	31	15	2	51	1.56
17291413--17291468	25	2.1	27	84	12	73	51	1	25	21	1.57
17296775--17296812	17	2.2	17	90	0	58	57	0	23	18	1.40
17297025--17297060	16	2.2	16	95	0	63	50	5	16	27	1.68
17299484--17299530	20	2.3	20	85	0	58	14	29	14	40	1.87
17300824--17300905	37	2.2	38	86	6	114	50	1	1	47	1.16
17301333--17301381	15	3.4	15	72	16	50	16	0	26	57	1.40
17301980--17302038	24	2.5	23	89	8	91	49	0	1	49	1.11
17301994--17302038	9	5.3	9	75	24	53	48	0	0	51	1.00
17302801--17302839	20	2.0	20	85	10	53	5	5	61	28	1.39
17303669--17303861	23	8.4	23	93	0	314	47	12	4	35	1.63
17312789--17312846	29	1.9	31	82	6	75	17	8	13	60	1.58
17313421--17313474	3	17.7	3	96	3	99	33	1	0	64	1.04
17319995--17320233	82	2.9	82	95	0	424	25	23	20	30	1.98
17327291--17327347	23	2.5	23	88	2	89	8	26	22	42	1.83
17334827--17334940	49	2.3	49	87	3	158	21	17	20	41	1.91
17338152--17338191	12	3.5	12	83	13	57	37	0	0	62	0.95
17338666--17338698	16	2.0	17	88	5	50	27	0	6	66	1.15
17338618--17338702	10	9.0	9	73	14	73	31	1	4	62	1.23
17338618--17338727	10	11.5	10	69	19	58	33	0	3	61	1.19
17338626--17338727	27	3.6	28	75	9	82	34	0	3	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17339681--17339732	18	2.9	18	74	2	52	59	1	9	28	1.40
17339777--17339830	17	3.4	17	65	15	51	62	0	1	35	1.06
17339768--17339838	31	2.3	31	95	0	124	61	0	2	35	1.10
17345366--17345520	56	2.8	56	84	3	199	26	21	16	35	1.95
17358998--17359062	17	3.8	17	81	6	69	44	12	24	18	1.84
17376968--17377011	20	2.2	20	87	0	61	38	9	4	47	1.56
17394090--17394188	25	3.9	25	81	5	110	31	22	21	25	1.98
17394090--17394188	50	2.0	51	83	2	128	31	22	21	25	1.98
17394076--17394190	25	4.6	25	79	9	99	31	21	20	26	1.98
17409919--17410129	102	2.1	99	80	4	226	36	18	19	25	1.94
17410793--17410821	4	7.2	4	100	0	58	24	0	0	75	0.80
17410823--17410860	14	2.7	14	88	8	51	73	7	0	18	1.06
17417221--17417539	41	7.8	41	85	3	333	24	23	22	29	1.99
17417221--17417539	123	2.6	123	83	3	410	24	23	22	29	1.99
17417636--17417742	40	2.7	40	86	5	162	18	20	18	42	1.90
17423047--17423394	43	8.3	43	82	7	428	24	19	28	27	1.99
17424884--17424929	12	3.7	12	94	5	74	0	41	8	50	1.33
17424885--17424929	14	3.4	14	90	6	67	0	42	6	51	1.28
17431467--17431505	20	2.0	20	94	0	69	35	7	15	41	1.76
17441814--17441843	16	1.9	16	93	6	53	60	3	16	20	1.50
17463651--17463694	23	2.0	22	86	4	61	38	0	15	45	1.47
17468760--17468803	20	2.2	20	87	0	61	47	4	9	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17490296--17490433	56	2.5	56	87	2	197	36	16	21	26	1.94
17490560--17490677	29	4.0	30	78	6	116	17	10	27	44	1.81
17490560--17490677	59	2.0	59	81	6	141	17	10	27	44	1.81
17491378--17491410	14	2.4	14	100	0	66	30	15	21	33	1.94
17491378--17491418	14	2.9	14	92	0	55	31	12	19	36	1.89
17494086--17494127	21	2.0	20	86	13	59	57	0	0	42	0.99
17495976--17496046	31	2.3	31	95	0	124	35	2	0	61	1.10
17495984--17496037	17	3.4	17	65	15	51	35	1	0	62	1.06
17496060--17496118	19	3.4	19	71	22	56	28	10	1	59	1.40
17507818--17507955	56	2.5	56	86	2	188	36	16	20	26	1.93
17508087--17508160	29	2.5	30	82	2	96	14	12	28	44	1.81
17508082--17508199	59	2.0	59	80	6	132	17	11	27	44	1.83
17511597--17511640	22	2.0	21	87	12	63	54	0	0	45	0.99
17520047--17520239	23	8.4	23	93	0	314	35	4	12	47	1.63
17521874--17521918	9	5.3	9	75	24	53	51	0	0	48	1.00
17521875--17521932	24	2.4	24	91	5	91	50	1	0	48	1.11
17522533--17522618	27	3.0	28	77	6	93	51	30	1	17	1.53
17523035--17523116	38	2.2	38	86	6	114	47	1	1	50	1.16
17524147--17524295	77	1.9	77	83	0	190	34	18	13	34	1.89
17524410--17524456	20	2.3	20	85	0	58	40	14	29	14	1.87
17526917--17526976	16	3.9	16	78	12	72	28	16	5	50	1.66
17527167--17527204	17	2.2	17	90	0	58	18	23	0	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17527147--17527194	24	2.0	24	88	8	71	18	27	2	52	1.57
17529099--17529133	16	2.2	16	100	0	70	34	8	5	51	1.56
17530948--17550652	92	213.7	92	92	1	31831	32	18	15	32	1.93
17562537--17562602	29	2.3	30	75	21	70	31	9	27	31	1.88
17562584--17562865	29	9.7	29	69	15	134	36	3	25	34	1.72
17562564--17562860	58	5.1	56	72	11	163	35	4	25	34	1.75
17562585--17562714	59	2.2	57	82	2	143	38	3	25	33	1.71
17562707--17562991	88	3.2	88	74	11	255	34	4	25	36	1.76
17562729--17562991	59	4.5	57	78	10	232	34	4	25	34	1.77
17562707--17562987	29	9.6	28	76	10	208	34	4	24	36	1.75
17564179--17564204	10	2.6	10	100	0	52	50	0	0	50	1.00
17581087--17581272	52	3.6	52	90	2	277	25	13	24	35	1.93
17582005--17582081	21	3.7	21	75	13	77	31	11	25	31	1.92
17582559--17582594	16	2.2	17	85	14	58	41	0	5	52	1.24
17589329--17589365	6	6.2	6	100	0	74	48	0	35	16	1.46
17593686--17593774	44	2.0	44	97	0	169	32	16	25	24	1.96
17593956--17593990	16	2.2	16	89	0	52	5	17	0	77	0.96
17594917--17594999	7	12.1	7	73	19	52	78	2	4	14	1.02
17594912--17594999	6	14.3	6	78	12	81	78	2	4	14	1.01
17597031--17597083	6	8.3	6	76	12	52	75	1	1	20	0.99
17597031--17597083	20	2.7	20	82	2	72	75	1	1	20	0.99
17599320--17599360	18	2.2	19	86	8	57	9	12	2	75	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17602429--17602562	24	5.6	24	89	0	214	24	22	24	28	1.99
17606532--17606731	100	2.0	100	93	0	337	40	19	5	35	1.74
17613281--17613363	26	3.2	26	63	10	71	49	14	7	28	1.70
17613267--17613369	51	2.0	51	100	0	206	44	16	7	31	1.76
17619708--17619754	24	2.0	23	83	4	58	23	2	23	51	1.59
17622407--17622468	23	2.7	24	77	7	65	54	6	12	25	1.62
17628875--17628909	15	2.2	16	90	5	54	54	11	5	28	1.59
17628875--17628917	16	2.8	15	89	3	59	53	9	4	32	1.53
17632041--17632497	229	2.0	229	100	0	914	29	11	18	39	1.87
17637173--17637225	24	2.2	24	86	0	79	24	15	5	54	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135