genome.fa.s2.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  68  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20317245--20317421	55	3.2	55	81	4	164	34	24	15	25	1.94
20317406--20317503	28	3.5	28	80	8	110	36	28	13	21	1.91
20318743--20318884	71	2.0	71	100	0	284	30	15	18	35	1.92
20324472--20324874	126	3.0	136	84	8	481	26	19	22	31	1.98
20324877--20325178	74	4.1	72	84	5	392	27	24	14	33	1.94
20324877--20325175	110	2.7	108	83	7	381	28	24	14	32	1.94
20327016--20327048	17	1.9	17	88	11	50	27	0	6	66	1.15
20328568--20328624	19	3.0	19	80	7	62	66	5	10	17	1.40
20328590--20328651	27	2.3	27	91	5	99	70	1	9	17	1.22
20329660--20329704	18	2.4	18	85	10	56	62	4	22	11	1.46
20331095--20331127	17	1.9	17	88	11	50	27	0	6	66	1.15
20331345--20331442	50	2.0	50	85	4	135	37	16	11	34	1.84
20336280--20336379	26	3.9	26	81	5	123	25	15	24	36	1.94
20339210--20339428	25	8.7	26	82	5	258	34	25	16	23	1.96
20342738--20342875	50	2.7	51	79	11	149	38	11	15	34	1.83
20343070--20343102	17	1.9	17	88	11	50	66	6	0	27	1.15
20352168--20352241	30	2.5	28	100	0	112	33	10	12	43	1.77
20365881--20365921	21	2.0	21	85	9	57	60	0	34	4	1.18
20371008--20371043	17	2.2	17	90	5	56	50	13	0	36	1.43
20371090--20371129	21	1.9	21	89	0	62	10	20	5	65	1.42
20385048--20385099	18	2.6	19	77	22	54	53	1	38	5	1.36
20385062--20385115	18	2.9	19	79	15	60	55	0	38	5	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20385082--20385124	9	4.8	9	77	11	52	58	0	39	2	1.11
20385066--20385108	21	2.1	20	83	12	52	58	0	39	2	1.11
20385067--20385124	27	2.1	28	84	9	75	58	0	37	3	1.15
20385432--20385457	3	8.7	3	100	0	52	69	0	30	0	0.89
20385540--20385583	18	2.5	18	88	3	63	15	11	13	59	1.62
20388786--20388849	30	2.2	29	89	8	103	48	21	3	26	1.65
20388786--20388864	30	2.7	29	79	14	99	43	22	3	30	1.71
20390364--20390433	30	2.3	30	82	4	88	41	18	4	35	1.70
20407082--20407151	30	2.2	32	90	5	108	62	0	35	1	1.04
20407105--20407154	15	3.2	15	72	27	50	70	0	28	2	0.99
20410974--20411009	19	1.9	18	88	5	54	75	2	11	11	1.16
20415983--20416027	13	3.5	13	76	11	56	2	15	0	82	0.77
20416591--20416636	17	2.7	17	79	0	56	45	15	19	19	1.85
20418165--20418672	255	2.0	254	94	0	881	25	21	21	31	1.98
20419270--20419335	23	2.9	23	95	0	123	22	25	10	40	1.86
20426696--20426731	18	2.0	18	88	0	54	11	13	36	38	1.81
20438334--20438374	19	2.2	19	86	0	55	43	21	4	29	1.73
20439294--20439578	138	2.1	138	92	1	473	40	7	5	47	1.54
20442734--20442793	26	2.3	26	100	0	120	26	25	25	23	2.00
20445484--20445530	16	3.0	16	84	3	51	78	12	0	8	0.95
20447425--20447617	51	3.8	51	88	0	287	32	16	23	28	1.96
20448235--20448291	21	2.5	23	88	8	82	36	5	19	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20450586--20450802	111	2.0	108	85	4	292	29	12	17	39	1.87
20453206--20453444	51	4.6	51	83	2	282	33	15	23	28	1.95
20460431--20460615	51	3.6	51	89	0	262	32	14	23	29	1.94
20464560--20464617	26	2.3	26	90	3	91	24	24	24	27	2.00
20468351--20468386	5	6.8	5	87	12	54	80	0	19	0	0.71
20468351--20468386	11	3.4	10	88	11	54	80	0	19	0	0.71
20468351--20468386	16	2.2	16	95	0	63	80	0	19	0	0.71
20469003--20469063	26	2.4	25	86	5	86	27	22	21	27	1.99
20482615--20482746	49	2.8	48	90	3	203	24	9	13	52	1.71
20482617--20482761	49	3.0	46	84	10	152	25	10	13	50	1.73
20501260--20501284	10	2.5	10	100	0	50	36	12	20	32	1.89
20513555--20513620	26	2.6	26	85	2	89	31	21	19	27	1.97
20513619--20513703	37	2.3	37	87	0	116	29	14	27	29	1.95
20513716--20513795	37	2.2	38	86	4	110	20	18	32	28	1.96
20514161--20514194	4	8.5	4	86	0	50	23	5	0	70	1.09
20520001--20520135	66	2.0	66	80	5	148	23	19	27	29	1.98
20521322--20521355	17	1.9	17	88	5	50	20	11	52	14	1.73
20526573--20526609	18	2.1	18	94	0	65	40	24	10	24	1.87
20537786--20537829	21	2.1	20	80	19	54	56	0	27	15	1.40
20537765--20537831	22	3.0	21	78	22	66	55	0	26	17	1.43
20538483--20538541	24	2.4	23	81	10	64	35	5	5	54	1.45
20544321--20544354	15	2.3	15	89	0	50	17	5	17	58	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20549513--20549542	2	15.0	2	100	0	60	50	0	0	50	1.00
20550095--20550253	80	2.0	80	86	2	221	22	20	25	31	1.98
20556764--20556984	80	2.8	80	86	1	302	21	20	25	32	1.97
20556582--20557137	261	2.1	262	88	1	830	23	20	24	31	1.98
20563548--20563803	37	6.9	37	85	0	305	10	19	30	40	1.85
20564483--20564531	21	2.3	21	82	0	62	30	10	26	32	1.89
20565118--20565166	24	2.0	24	100	0	98	51	24	12	12	1.73
20570783--20570984	37	5.5	37	89	0	316	9	19	31	39	1.84
20570962--20571006	21	2.1	22	91	4	74	11	15	26	46	1.79
20571769--20571819	21	2.4	21	83	0	66	29	9	29	31	1.89
20577789--20577813	11	2.3	11	100	0	50	44	8	0	48	1.32
20581956--20582153	86	2.3	86	82	5	233	27	26	11	34	1.90
20581965--20582153	42	4.4	42	79	5	209	26	26	10	35	1.88
20597110--20597156	16	2.9	16	93	3	76	57	6	17	19	1.60
20598873--20598898	11	2.4	11	100	0	52	38	0	53	7	1.30
20604755--20604784	12	2.5	12	94	0	51	50	3	33	13	1.58
20608653--20608889	118	2.0	118	96	0	438	43	13	10	32	1.80
20608987--20609030	22	2.0	22	95	0	79	27	38	18	15	1.91
20610512--20610587	28	2.8	26	80	7	89	28	28	13	28	1.94
20611959--20611995	17	2.2	16	90	4	56	75	0	8	16	1.02
20613435--20613464	10	3.0	10	95	0	51	40	16	20	23	1.91
20613688--20613747	23	2.6	22	80	17	61	10	13	5	71	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20616380--20616404	13	1.9	13	100	0	50	68	0	0	32	0.90
20617830--20617871	16	2.5	17	85	11	52	73	2	9	14	1.18
20617836--20617871	16	2.2	16	90	9	56	75	0	8	16	1.04
20625825--20626018	50	3.9	50	80	4	212	37	15	25	21	1.93
20625821--20626018	100	2.0	100	87	4	283	37	15	25	21	1.93
20625875--20626037	50	3.3	50	77	6	159	34	15	27	22	1.94
20639214--20639392	41	4.3	42	82	5	157	34	11	27	26	1.90
20639297--20639401	42	2.5	42	84	0	138	35	11	26	26	1.90
20641124--20641312	23	8.2	23	86	0	261	47	13	4	34	1.63
20641124--20641312	46	4.1	46	90	0	297	47	13	4	34	1.63
20641124--20641312	69	2.7	69	90	0	306	47	13	4	34	1.63
20646763--20646826	25	2.5	25	80	10	67	60	6	1	31	1.30
20654827--20655274	195	2.3	194	82	6	539	24	27	20	27	1.99
20659120--20659166	23	2.0	23	95	0	85	23	27	10	38	1.88
20659469--20659556	37	2.4	37	86	3	115	22	18	31	27	1.97
20670903--20670964	26	2.4	27	75	8	65	30	19	22	27	1.98
20679651--20679696	18	2.6	18	77	19	51	2	32	2	63	1.19
20696390--20696459	23	3.0	23	76	2	77	42	14	12	30	1.83
20696469--20696508	11	3.4	11	89	10	53	67	7	0	25	1.16
20698265--20698327	24	2.6	24	92	0	99	50	6	14	28	1.67
20700207--20700267	24	2.5	24	91	0	95	52	8	11	27	1.66
20702370--20702398	14	2.1	14	100	0	58	27	20	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20702372--20702406	14	2.5	14	90	0	52	37	22	22	17	1.94
20702538--20702623	36	2.4	36	86	1	111	18	25	20	34	1.96
20705449--20705477	3	9.7	3	100	0	58	0	34	0	65	0.93
20706355--20706410	26	2.2	26	87	3	78	64	3	0	32	1.11
20715538--20715600	21	3.0	21	92	0	108	36	7	17	38	1.79
20728278--20728321	23	2.0	22	86	4	61	38	0	15	45	1.47
20728692--20728736	7	6.4	7	94	0	81	15	53	0	31	1.43
20744198--20744231	17	2.1	17	88	5	52	50	14	0	35	1.44
20765001--20765038	5	7.4	5	85	14	51	76	2	0	21	0.91
20766059--20766107	14	3.6	14	80	2	55	38	24	20	16	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135