genome.fa.s2.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  28  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7315696--7315761	19	3.7	18	67	17	57	30	10	18	40	1.84
7315702--7315768	34	2.0	34	100	0	134	31	11	17	38	1.87
7317269--7317306	17	2.2	17	90	0	58	60	15	2	21	1.47
7330766--7330790	12	2.1	12	100	0	50	60	16	0	24	1.36
7331010--7331143	30	4.4	30	70	13	89	47	1	7	44	1.40
7331010--7331143	61	2.2	61	81	9	150	47	1	7	44	1.40
7336932--7337002	36	2.0	36	86	5	99	21	38	4	36	1.73
7338614--7338690	24	2.8	27	79	18	88	35	5	11	48	1.62
7338623--7338672	24	2.1	24	100	0	100	30	4	12	54	1.55
7338924--7339063	69	2.0	69	95	0	235	35	14	2	48	1.56
7339031--7339099	35	1.9	35	82	8	86	23	17	1	57	1.47
7341766--7341892	23	5.4	23	85	5	157	42	22	22	12	1.87
7345897--7345928	16	1.9	17	93	6	57	65	0	3	31	1.08
7346066--7346101	18	2.0	18	88	0	54	52	5	0	41	1.24
7350257--7350289	3	11.0	3	100	0	66	0	33	0	66	0.92
7352615--7352645	2	16.0	2	93	6	55	48	0	0	51	1.00
7355757--7355833	28	2.9	27	85	12	113	75	0	14	10	1.05
7356099--7356124	12	2.2	12	100	0	52	69	7	0	23	1.14
7356101--7356180	41	2.0	41	87	0	115	63	11	3	21	1.42
7356832--7356877	24	2.0	23	86	4	65	65	0	2	32	1.05
7358576--7358668	38	2.4	38	100	0	186	25	17	24	32	1.97
7359297--7359469	23	7.4	23	79	10	147	43	20	23	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7359297--7359446	69	2.1	67	85	11	196	44	20	22	12	1.84
7364470--7364599	37	3.4	37	70	8	116	32	29	17	20	1.96
7364507--7364632	41	3.2	41	70	8	134	38	27	13	20	1.90
7364466--7364641	78	2.3	78	95	0	325	33	27	17	21	1.95
7364492--7364617	38	3.3	38	71	8	128	37	26	15	20	1.93
7365492--7365526	14	2.5	14	85	0	52	62	2	0	34	1.10
7365505--7365560	13	4.5	12	76	14	51	51	1	0	46	1.11
7369966--7370009	22	2.0	22	90	0	70	13	20	25	40	1.89
7369941--7370044	25	4.2	24	80	10	113	14	25	24	36	1.93
7375061--7375097	14	2.6	14	86	0	56	64	2	0	32	1.07
7375436--7375462	2	13.5	2	100	0	54	48	0	0	51	1.00
7377273--7377367	45	2.1	44	79	12	104	23	48	2	26	1.62
7377290--7377376	45	1.9	45	93	4	149	21	50	2	25	1.60
7377315--7377421	54	2.0	54	89	7	164	23	51	1	23	1.58
7383568--7383610	22	2.0	22	90	0	68	39	0	2	58	1.11
7385745--7385796	25	2.1	25	92	0	86	28	7	15	48	1.73
7389019--7389194	87	2.0	89	96	2	329	30	10	15	44	1.79
7395162--7395186	8	3.1	8	100	0	50	52	36	12	0	1.39
7405198--7405237	19	2.0	19	85	9	53	82	0	17	0	0.67
7422596--7422653	22	2.7	20	77	15	53	48	5	1	44	1.35
7423635--7423690	26	2.2	26	93	6	96	32	14	0	53	1.41
7423641--7423700	26	2.3	26	85	2	86	28	15	1	55	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7424068--7424099	13	2.5	13	94	0	55	15	0	3	81	0.82
7427126--7427208	28	3.0	28	83	0	112	43	18	12	26	1.84
7427462--7427502	17	2.4	17	87	0	64	41	0	2	56	1.13
7429411--7429579	30	5.7	30	78	7	157	38	21	2	37	1.66
7429419--7429525	29	3.7	29	82	6	110	37	21	1	39	1.64
7429478--7429584	29	3.6	28	79	13	99	39	25	1	33	1.67
7429948--7430139	96	2.0	96	81	8	221	30	19	13	37	1.89
7440936--7441181	30	8.4	30	80	4	270	42	23	0	33	1.60
7440930--7441240	30	10.6	28	74	10	162	40	25	2	31	1.69
7440930--7441240	58	5.3	57	83	7	315	40	25	2	31	1.69
7441277--7441368	29	3.1	31	79	11	86	28	25	7	39	1.83
7443205--7443264	32	1.9	31	86	3	84	46	13	5	35	1.65
7447455--7447495	16	2.5	17	80	11	50	31	0	4	63	1.15
7452917--7453028	22	4.9	22	80	8	125	12	23	22	41	1.87
7452925--7453060	70	2.0	69	85	4	184	13	25	19	41	1.88
7453035--7453081	24	2.0	24	86	0	67	14	31	12	40	1.84
7455588--7455632	22	2.0	22	82	0	54	26	24	28	20	1.99
7465369--7465509	72	2.0	72	81	2	167	31	9	15	43	1.78
7466436--7466520	41	2.1	41	100	0	170	44	18	9	27	1.80
7468674--7468729	29	1.9	29	85	0	76	37	1	3	57	1.27
7471561--7471701	30	4.7	30	72	15	89	28	10	9	51	1.67
7471943--7472093	60	2.5	60	89	1	232	45	11	17	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7471977--7472071	29	3.2	29	69	16	77	45	10	16	27	1.80
7472045--7472122	36	2.1	37	85	2	104	48	10	16	24	1.77
7472054--7472127	36	2.0	36	94	2	130	44	10	17	27	1.82
7473954--7474011	17	3.5	17	93	6	93	41	3	0	55	1.17
7473944--7474014	11	6.5	11	75	6	63	43	2	1	52	1.24
7473954--7474016	6	11.2	6	76	19	64	44	3	0	52	1.17
7474678--7474728	19	2.7	19	84	3	59	58	0	3	37	1.16
7475838--7476291	29	15.5	26	66	25	118	35	28	1	33	1.69
7475825--7476438	59	10.5	59	84	7	645	35	29	2	32	1.71
7475834--7476438	118	5.2	115	86	5	731	35	29	2	33	1.71
7475838--7476438	177	3.4	173	84	7	725	35	28	2	33	1.71
7476161--7476438	29	9.5	28	70	21	153	35	29	2	33	1.71
7477903--7478082	51	3.5	51	88	3	245	31	23	14	30	1.94
7489621--7489800	52	3.5	52	89	0	243	26	14	22	36	1.93
7490181--7490267	42	2.1	42	97	0	165	48	6	19	25	1.74
7490181--7490254	23	3.4	23	66	21	68	45	5	22	25	1.73
7496335--7496521	52	3.6	52	86	1	250	26	16	24	33	1.96
7505219--7505257	17	2.3	17	86	0	51	15	10	25	48	1.76
7505906--7506023	62	1.9	59	86	5	164	51	4	3	40	1.38
7507072--7507114	18	2.4	18	84	11	61	55	0	0	44	0.99
7512555--7512785	116	2.0	116	100	0	462	25	13	24	36	1.92
7515899--7515940	21	2.0	21	86	9	59	59	33	7	0	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7517013--7517086	29	2.5	30	86	8	98	21	13	14	50	1.78
7525298--7525401	52	2.0	51	86	1	145	30	6	20	42	1.78
7538986--7539027	7	6.0	7	97	0	75	45	0	40	14	1.45
7539027--7539073	15	3.2	15	81	3	60	0	27	0	72	0.85
7539027--7539057	5	6.2	5	96	0	53	0	22	0	77	0.77
7539943--7540069	51	2.5	53	72	17	117	55	2	5	37	1.36
7548508--7548588	19	4.3	19	75	0	81	35	19	20	23	1.96
7554810--7555388	59	9.4	60	79	10	550	30	21	17	30	1.96
7555266--7555290	13	1.9	13	100	0	50	64	4	16	16	1.44
7559040--7559066	12	2.2	12	100	0	54	59	0	0	40	0.98
7559221--7560491	83	15.3	83	94	1	2113	38	5	4	50	1.47
7562894--7562959	30	2.2	30	86	10	91	28	4	6	60	1.40
7562894--7562991	30	3.3	30	82	2	81	27	7	4	61	1.41
7563873--7564027	61	2.5	60	87	5	231	33	18	17	30	1.94
7563930--7564133	99	2.0	101	88	7	310	35	17	18	28	1.94
7563991--7564065	39	1.9	39	91	0	123	37	17	12	33	1.86
7564029--7564168	60	2.3	60	82	8	176	34	19	22	24	1.96
7563876--7564181	160	1.9	161	82	5	388	33	17	19	29	1.95
7565102--7565135	18	1.9	18	88	5	52	29	0	5	64	1.17
7567354--7567398	18	2.4	18	82	17	65	46	0	2	51	1.13
7571668--7571740	30	2.4	31	79	4	76	46	10	10	31	1.74
7575390--7575433	23	1.9	23	86	9	63	20	4	4	70	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7579391--7579424	3	11.3	3	100	0	68	35	0	0	64	0.94
7583444--7583488	23	2.0	23	82	8	56	44	2	4	48	1.35
7583453--7583509	28	2.0	28	93	0	96	42	3	3	50	1.36
7583519--7583581	27	2.4	25	80	17	74	47	0	3	49	1.17
7583538--7583595	27	2.1	27	84	6	73	48	3	1	46	1.29
7584707--7584832	67	1.9	67	86	0	180	33	38	7	21	1.81
7584707--7584839	35	3.9	35	87	5	173	32	36	6	24	1.81
7599741--7599788	25	1.9	25	100	0	96	20	0	37	41	1.53
7602928--7602963	18	2.1	18	89	5	56	33	25	0	41	1.55
7603341--7603372	14	2.3	14	94	0	55	0	34	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135