genome.fa.s2.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  101  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31356758--31356795	17	2.2	17	86	9	51	26	5	0	68	1.11
31362927--31363001	37	2.0	38	87	7	109	28	10	24	37	1.88
31364958--31365018	23	2.6	23	80	15	70	27	13	22	36	1.92
31365073--31365237	75	2.2	75	81	2	188	26	19	20	33	1.97
31374969--31375006	19	2.0	19	100	0	76	52	0	10	36	1.36
31375487--31375581	23	4.1	23	88	0	145	12	27	21	38	1.89
31381152--31381227	23	3.3	22	72	17	66	40	10	0	48	1.38
31381247--31381287	19	2.2	19	86	4	57	51	4	7	36	1.51
31381437--31381485	19	2.6	18	81	12	55	42	8	0	48	1.32
31381666--31381776	17	6.3	17	81	5	123	39	0	5	54	1.30
31381686--31381776	6	15.7	6	71	11	64	39	1	4	54	1.27
31381666--31381776	35	3.1	35	81	8	127	39	0	5	54	1.30
31386592--31386636	19	2.4	19	81	7	56	37	0	4	57	1.19
31387436--31387496	22	2.8	22	82	2	61	13	13	3	70	1.29
31389034--31389083	21	2.4	21	82	0	55	44	16	14	26	1.85
31389045--31389084	21	1.9	21	89	0	62	42	15	17	25	1.88
31393123--31393171	8	6.4	8	79	6	57	14	4	0	81	0.83
31393123--31393171	15	3.2	15	80	13	64	14	4	0	81	0.83
31393659--31393684	10	2.6	10	100	0	52	92	0	7	0	0.39
31393864--31394053	102	1.9	102	85	6	269	34	13	25	26	1.93
31394616--31394660	19	2.4	19	81	7	56	37	0	4	57	1.19
31397303--31397334	12	2.6	12	95	5	55	84	12	0	3	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31397296--31397334	13	2.8	15	81	18	57	82	12	0	5	0.83
31398160--31398200	19	2.2	18	86	4	55	80	7	12	0	0.90
31398160--31398206	12	3.8	12	81	13	51	78	6	12	2	1.02
31399734--31400420	76	9.0	76	92	0	1122	34	15	17	33	1.91
31399738--31400511	152	5.0	152	94	2	1260	34	15	17	32	1.91
31399734--31400511	228	3.3	228	90	3	1178	34	15	17	32	1.91
31400355--31400503	40	3.5	40	73	21	149	34	16	18	31	1.93
31400338--31400513	40	4.0	45	72	22	142	34	17	17	30	1.93
31400338--31400513	91	1.9	91	97	0	334	34	17	17	30	1.93
31401129--31401179	17	2.9	17	85	5	66	39	0	5	54	1.24
31401148--31401228	6	13.7	6	73	12	60	40	1	3	54	1.26
31401128--31401209	36	2.3	35	83	12	96	39	0	6	54	1.25
31401139--31401222	42	2.0	43	83	6	109	40	1	4	53	1.30
31406043--31406087	19	2.4	19	81	7	56	37	0	4	57	1.19
31406887--31406947	22	2.8	22	82	2	61	13	13	3	70	1.29
31408489--31408538	21	2.4	21	82	0	55	44	16	14	26	1.85
31408500--31408539	21	1.9	21	89	0	62	42	15	17	25	1.88
31414829--31414901	20	3.7	20	79	12	71	36	0	4	58	1.17
31421227--31421466	30	8.0	29	81	7	200	34	26	6	32	1.83
31421227--31421466	60	4.0	60	82	5	256	34	26	6	32	1.83
31421227--31421466	90	2.7	88	80	8	245	34	26	6	32	1.83
31426125--31426733	39	15.7	39	68	6	234	23	30	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31426125--31426735	117	5.3	117	75	11	463	23	30	18	26	1.98
31426342--31426450	35	3.0	36	75	20	109	23	36	15	23	1.94
31426274--31426559	152	1.9	152	86	4	416	23	34	17	25	1.96
31426274--31426604	78	4.3	76	81	7	375	23	33	17	25	1.96
31426589--31426754	78	2.1	78	83	4	201	22	28	18	30	1.97
31426648--31426754	39	2.8	38	69	2	97	24	29	16	28	1.97
31426612--31426775	78	2.1	77	78	6	170	24	27	19	28	1.99
31427432--31427495	17	3.8	16	80	10	74	40	1	3	54	1.25
31427520--31427573	26	2.1	26	86	6	74	46	33	7	12	1.70
31429064--31429246	30	6.1	30	80	3	181	37	26	2	33	1.69
31429064--31429252	90	2.1	90	82	4	231	38	26	2	33	1.68
31429064--31429252	60	3.2	60	81	5	213	38	26	2	33	1.68
31437164--31437323	30	5.3	29	66	22	89	23	16	12	46	1.81
31437164--31437348	60	3.1	60	88	3	266	23	16	11	48	1.79
31439700--31439916	107	2.0	107	88	0	317	40	13	12	33	1.83
31440197--31440244	24	2.0	24	84	8	62	50	0	0	50	1.00
31448280--31448313	17	2.0	17	94	0	59	32	11	2	52	1.53
31449416--31449444	13	2.1	14	93	6	51	41	3	0	55	1.17
31450923--31450981	9	6.6	9	76	7	57	62	5	1	30	1.26
31450923--31451015	19	5.2	17	78	13	57	66	4	1	27	1.17
31450959--31451062	9	11.0	10	70	20	73	67	2	1	27	1.16
31450959--31451027	17	3.8	17	80	16	68	69	2	1	26	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31450932--31451071	9	15.5	8	68	19	64	66	2	2	28	1.17
31450932--31451071	18	7.8	17	74	13	86	66	2	2	28	1.17
31450965--31451072	55	2.0	55	85	3	146	68	1	1	27	1.10
31450932--31451070	37	3.8	36	74	14	99	66	2	2	28	1.18
31451211--31451235	12	2.1	12	100	0	50	32	0	24	44	1.54
31453164--31453204	7	5.7	7	82	5	55	41	0	2	56	1.13
31453181--31453228	17	2.9	17	93	6	82	37	0	4	58	1.18
31453167--31453246	6	13.8	6	72	13	53	42	1	2	53	1.22
31453199--31453239	17	2.4	17	87	0	55	43	2	2	51	1.28
31453319--31453359	20	2.1	20	86	4	57	46	43	4	4	1.46
31453950--31453979	13	2.4	12	94	5	51	63	0	0	36	0.95
31455077--31455361	28	9.9	30	75	16	96	34	27	4	34	1.76
31455130--31455306	29	6.1	28	78	12	153	32	24	5	37	1.78
31455130--31455276	57	2.6	57	82	11	176	31	24	6	37	1.80
31455172--31455361	28	6.7	27	80	9	184	36	26	2	33	1.71
31457585--31457637	20	2.7	19	85	8	63	58	0	3	37	1.16
31457604--31457645	10	4.4	9	82	11	57	64	0	0	35	0.94
31458006--31458259	9	26.3	9	66	21	72	30	4	2	62	1.28
31458032--31458082	21	2.4	21	75	15	52	31	3	1	62	1.24
31458155--31458223	16	4.0	16	74	17	57	33	4	0	62	1.15
31458202--31458258	21	2.8	21	84	10	64	26	3	5	64	1.30
31458189--31458259	19	3.6	19	82	12	81	25	4	4	66	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31461723--31461749	2	13.5	2	100	0	54	51	0	0	48	1.00
31464703--31464759	28	2.0	28	89	0	87	45	1	5	47	1.35
31465469--31465529	19	3.3	17	82	15	68	31	1	0	67	1.01
31465484--31465529	19	2.5	18	89	6	74	28	0	0	71	0.86
31465484--31465535	9	5.7	9	75	4	50	28	0	0	71	0.87
31482996--31483112	56	2.1	56	90	0	180	24	24	21	29	1.99
31486320--31486387	21	3.2	21	70	12	59	27	14	23	33	1.94
31486500--31486538	16	2.3	18	82	8	55	33	0	15	51	1.44
31488881--31489131	29	8.7	29	68	21	104	39	3	23	33	1.71
31488881--31489260	58	6.5	59	79	9	275	39	2	22	35	1.67
31489123--31489255	60	2.2	60	91	0	212	39	0	18	41	1.55
31489123--31489256	30	4.5	30	82	9	157	40	0	17	41	1.55
31491545--31491571	13	2.1	13	100	0	54	14	22	22	40	1.90
31492656--31493078	137	3.1	137	96	0	774	31	4	11	52	1.58
31500872--31500941	27	2.5	30	77	15	78	45	1	0	52	1.09
31509587--31509639	24	2.2	24	89	0	79	30	22	26	20	1.98
31510424--31510481	29	2.1	27	83	6	71	62	6	3	27	1.37
31515021--31515065	22	2.0	22	100	0	90	31	17	13	37	1.89
31515870--31515924	29	1.9	28	82	10	67	49	3	1	45	1.30
31521683--31521842	56	3.0	54	83	8	193	27	16	16	40	1.89
31521844--31522184	59	5.8	59	76	11	256	27	18	15	38	1.92
31522003--31522169	57	2.9	57	80	10	187	23	20	14	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31521940--31522169	116	2.0	116	88	1	345	23	19	15	41	1.90
31521832--31522184	60	5.9	59	74	13	244	26	18	15	39	1.91
31522989--31523033	18	2.6	18	89	3	65	57	2	13	26	1.48
31525159--31525313	60	2.6	58	78	12	154	39	18	19	22	1.93
31525167--31525372	60	3.4	61	76	9	147	40	16	17	25	1.90
31525384--31525643	59	4.4	59	81	9	257	39	15	16	28	1.89
31525384--31525688	58	5.2	59	80	8	268	41	17	16	25	1.89
31525384--31525654	117	2.3	116	78	9	291	40	15	16	27	1.88
31527836--31527862	2	13.5	2	100	0	54	48	0	0	51	1.00
31543288--31543314	5	5.4	5	100	0	54	18	40	0	40	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135