genome.fa.s2.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  95  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29597141--29597365	49	4.6	49	71	7	188	20	25	19	35	1.96
29598231--29598290	17	3.2	19	79	18	72	0	20	0	80	0.72
29599145--29599182	5	8.0	5	88	5	53	0	18	0	81	0.69
29599138--29599180	18	2.3	19	88	4	70	0	23	0	76	0.78
29599238--29599288	10	5.3	10	84	11	54	0	13	0	86	0.58
29599227--29599288	18	3.2	20	75	15	67	1	14	0	83	0.71
29599229--29599286	4	14.8	4	75	15	50	1	15	0	82	0.74
29599234--29599301	30	2.2	30	85	12	86	0	17	0	82	0.67
29599226--29599302	36	2.1	37	86	13	108	1	18	0	80	0.78
29599277--29599313	15	2.3	17	81	13	51	2	21	2	72	1.09
29603169--29603321	29	5.2	30	81	6	154	37	1	24	35	1.67
29603171--29603321	59	2.6	58	80	9	155	38	1	24	35	1.67
29607056--29607087	5	6.4	5	100	0	64	21	0	0	78	0.76
29607427--29607886	235	2.0	225	86	5	625	43	8	9	38	1.67
29622938--29623000	30	2.1	30	85	8	85	44	4	11	39	1.61
29624726--29624782	17	3.4	17	71	9	53	52	0	0	47	1.00
29628632--29628688	21	2.8	21	86	2	80	40	14	24	21	1.90
29638869--29639036	85	2.0	85	81	4	196	26	20	13	39	1.89
29638861--29639577	209	3.4	208	89	2	1010	24	21	15	38	1.92
29639297--29639454	85	1.9	85	83	0	208	24	23	16	35	1.95
29639381--29639749	172	2.1	172	93	0	630	23	23	15	36	1.94
29643930--29644440	29	17.4	29	66	16	128	35	3	27	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29643888--29644529	59	10.9	59	80	5	624	34	4	28	32	1.77
29643930--29644529	117	5.1	116	81	7	651	35	3	28	32	1.75
29643888--29644435	176	3.1	175	85	3	690	34	4	28	31	1.79
29644275--29644542	29	9.1	29	68	20	139	33	2	30	33	1.72
29645430--29645463	16	2.1	16	100	0	68	47	23	17	11	1.81
29645711--29645746	15	2.4	15	90	0	54	36	8	2	52	1.46
29646323--29646387	17	4.0	17	74	11	64	52	1	4	41	1.31
29646654--29647357	38	18.7	39	67	15	324	31	18	16	34	1.93
29646654--29647379	76	9.6	76	89	4	1089	31	18	16	33	1.93
29646654--29647379	297	2.4	300	90	3	1090	31	18	16	33	1.93
29659473--29659823	59	6.0	58	84	5	307	34	3	29	31	1.76
29659517--29659823	59	5.2	59	87	4	376	36	2	27	33	1.71
29659517--29659823	117	2.6	116	87	5	415	36	2	27	33	1.71
29659606--29659824	29	7.5	29	71	22	129	35	2	28	33	1.70
29659723--29659836	29	4.0	28	77	13	106	34	0	30	34	1.64
29661577--29661641	17	4.0	17	74	11	64	52	0	4	43	1.22
29671307--29671488	52	3.5	52	92	0	292	37	25	12	24	1.91
29677991--29678123	61	2.3	59	83	6	164	31	11	1	55	1.44
29686475--29686564	40	2.3	39	79	9	101	30	17	17	34	1.94
29688316--29688378	28	2.2	28	85	2	81	25	6	33	34	1.81
29688567--29688649	30	2.8	29	85	5	96	37	4	18	39	1.72
29688461--29688757	29	10.5	28	73	15	168	33	3	24	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29688581--29688727	79	1.9	79	81	5	181	34	4	24	36	1.77
29688596--29688747	79	1.9	79	80	5	173	36	4	22	36	1.75
29689809--29689847	3	12.7	3	83	5	51	38	0	0	61	0.96
29689805--29689844	9	4.3	9	87	6	62	40	0	0	60	0.97
29689809--29689847	19	2.1	18	95	4	69	38	0	0	61	0.96
29689816--29689868	19	2.8	20	85	5	65	39	3	0	56	1.17
29690709--29690767	23	2.6	22	86	5	73	52	5	0	42	1.23
29690711--29690793	17	4.7	17	80	11	87	51	6	2	39	1.39
29690711--29690767	11	4.9	12	82	8	73	50	5	0	43	1.24
29690711--29690767	6	9.8	6	83	7	73	50	5	0	43	1.24
29690808--29690837	15	2.0	15	93	0	51	66	0	3	30	1.07
29692191--29692238	17	2.8	17	84	9	62	33	0	2	64	1.05
29695200--29695226	3	9.0	3	100	0	54	0	33	33	33	1.58
29697368--29697401	2	17.0	2	93	0	59	47	0	52	0	1.00
29704387--29704430	20	2.3	19	85	11	63	50	11	2	36	1.51
29704391--29704429	20	2.0	20	94	0	69	48	10	2	38	1.51
29707784--29707832	24	2.0	24	84	0	62	40	12	10	36	1.77
29716918--29716949	2	16.0	2	100	0	64	50	50	0	0	1.00
29719483--29719542	18	3.4	18	76	15	63	65	15	0	20	1.28
29720385--29720455	25	2.7	26	82	10	83	60	1	0	38	1.06
29720480--29720525	6	7.7	6	100	0	92	0	67	0	32	0.91
29722673--29722934	138	1.9	137	96	1	490	29	6	24	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29726718--29726754	13	2.8	13	87	0	56	29	10	2	56	1.47
29727788--29727983	30	6.6	30	77	7	150	35	22	1	40	1.64
29727782--29728136	59	6.0	60	77	4	247	35	24	2	37	1.68
29727848--29728136	30	9.8	30	78	5	248	37	25	2	34	1.69
29727847--29728136	59	4.9	58	77	9	264	36	25	2	35	1.69
29740087--29740253	85	2.0	85	84	0	217	37	13	23	25	1.92
29740071--29740868	208	3.8	207	87	2	1064	37	16	21	23	1.94
29740500--29740660	85	1.9	85	82	0	205	37	16	21	24	1.94
29740796--29740916	48	2.5	48	84	0	143	38	13	21	26	1.90
29740073--29740859	416	1.9	417	87	1	1175	36	17	21	24	1.94
29740711--29740869	85	1.9	85	82	0	201	36	16	23	23	1.94
29741887--29741920	13	2.6	13	85	0	50	29	11	2	55	1.50
29742942--29743293	30	11.8	31	78	10	274	36	24	1	37	1.63
29743005--29743293	90	3.2	90	81	6	340	37	25	0	35	1.61
29745518--29745543	4	6.5	4	100	0	52	0	46	0	53	1.00
29747789--29747869	40	2.0	40	92	0	135	28	24	20	25	1.99
29751829--29751882	6	9.5	6	88	8	78	83	0	0	16	0.65
29760593--29760908	159	2.0	159	98	0	605	44	12	5	37	1.66
29761084--29761124	2	20.5	2	100	0	82	51	48	0	0	1.00
29762134--29762228	49	1.9	49	97	0	181	28	5	29	36	1.79
29762852--29762898	24	2.0	24	91	0	76	21	23	23	31	1.98
29763381--29763457	21	3.7	21	74	19	72	25	23	12	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29767295--29767353	21	2.8	21	82	5	66	27	10	27	35	1.89
29769483--29769590	30	3.6	30	82	5	128	41	22	15	20	1.90
29769794--29769852	30	2.0	30	96	0	109	30	20	18	30	1.96
29769986--29770104	56	2.1	56	87	0	166	24	23	15	36	1.94
29772624--29772650	3	9.0	3	100	0	54	66	0	0	33	0.92
29772758--29772836	38	2.1	39	83	11	101	69	3	3	22	1.21
29773992--29774025	17	2.1	17	94	5	61	35	5	23	35	1.79
29774315--29774561	81	3.0	81	81	4	287	24	16	26	32	1.96
29774315--29774573	39	6.3	42	79	6	248	24	17	25	32	1.97
29774339--29774598	120	2.1	122	84	5	346	25	15	27	31	1.96
29774505--29774638	39	3.4	38	82	8	110	27	14	28	29	1.96
29785498--29785538	13	3.0	13	85	7	55	70	7	2	19	1.22
29787790--29787823	17	2.1	16	94	5	59	35	8	23	32	1.86
29789265--29789308	23	1.9	23	95	0	79	15	22	31	29	1.95
29792832--29792880	16	3.1	16	75	21	50	46	2	0	51	1.12
29793702--29793880	90	2.0	89	83	5	227	24	17	14	43	1.86
29793756--29793828	31	2.4	31	80	13	87	27	17	12	42	1.85
29794064--29794136	31	2.4	29	79	4	83	50	13	10	24	1.74
29798275--29798336	30	2.1	30	96	0	115	38	1	19	40	1.61
29801705--29801740	13	2.7	13	91	4	54	63	0	0	36	0.94
29812923--29812967	20	2.2	20	84	11	56	35	4	2	57	1.31
29815045--29815099	25	2.2	25	81	12	60	49	1	1	47	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29817814--29817846	15	2.2	15	94	0	57	39	27	12	21	1.88
29825747--29825782	14	2.6	14	90	0	54	38	8	25	27	1.84
29836358--29836674	158	2.0	158	89	2	485	21	24	25	28	1.99
29842801--29843011	60	3.5	60	84	2	246	32	5	23	39	1.77
29842801--29843046	90	2.8	86	83	6	285	33	4	22	39	1.76
29842801--29843011	30	7.1	30	79	5	221	32	5	23	39	1.77
29842992--29843056	30	2.2	30	83	2	78	38	3	18	40	1.66
29843010--29843085	30	2.5	31	82	6	102	36	5	22	35	1.77
29844723--29844829	40	2.7	39	81	4	117	28	16	23	30	1.96
29844822--29844964	40	3.6	40	90	1	216	25	16	25	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135