genome.fa.s2.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  85  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26221733--26221776	21	2.0	23	83	16	58	47	18	6	27	1.73
26235738--26235775	3	13.0	3	94	5	69	68	0	31	0	0.90
26256041--26256108	23	3.0	23	85	12	104	69	13	2	14	1.31
26261735--26261774	7	5.6	7	82	5	53	0	20	0	80	0.72
26262802--26262848	12	3.8	12	81	13	60	0	38	0	61	0.96
26262801--26262855	24	2.3	24	81	6	67	3	36	0	60	1.15
26272591--26272633	18	2.4	18	88	0	59	11	32	6	48	1.66
26279652--26279815	81	2.0	82	97	1	312	38	17	18	25	1.92
26283537--26283574	17	2.2	17	86	9	51	15	13	15	55	1.70
26290444--26290586	70	2.0	70	79	2	153	34	16	26	22	1.95
26292670--26292750	41	2.0	41	95	0	144	34	11	19	34	1.87
26293015--26293055	11	3.9	11	84	9	50	31	0	0	68	0.90
26294628--26294693	27	2.4	27	87	5	98	15	13	28	42	1.85
26297512--26297544	5	6.8	5	89	6	50	66	0	33	0	0.92
26298340--26298381	18	2.4	18	84	11	52	26	4	2	66	1.23
26317995--26318180	80	2.4	76	79	8	200	29	19	9	41	1.82
26321443--26321486	22	2.0	22	100	0	88	54	4	13	27	1.58
26322858--26322904	24	2.0	24	91	0	76	29	21	21	27	1.98
26322860--26322912	24	2.2	24	86	0	70	28	24	20	26	1.99
26325744--26325825	43	1.9	43	84	0	110	42	18	6	32	1.75
26325714--26325967	102	2.5	99	92	3	409	44	16	7	30	1.77
26327865--26327897	9	3.7	9	95	0	57	48	24	0	27	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26327893--26327951	9	6.8	8	82	7	55	47	11	10	30	1.73
26327884--26327926	18	2.4	18	80	7	52	44	20	6	27	1.77
26327901--26327953	17	3.1	17	81	13	63	47	11	13	28	1.77
26328162--26328203	22	1.9	23	85	9	61	47	9	14	28	1.75
26333902--26333947	24	2.0	24	91	4	76	21	15	41	21	1.90
26334066--26334099	14	2.4	14	95	0	59	17	5	14	61	1.52
26334755--26334836	32	2.6	32	86	11	123	51	21	0	26	1.48
26349625--26349785	50	3.2	50	87	0	234	31	16	18	33	1.93
26355216--26355253	19	2.0	19	100	0	76	42	15	10	31	1.81
26359742--26359783	20	2.1	20	100	0	84	35	33	9	21	1.86
26364303--26364372	31	2.3	31	90	9	110	51	0	1	47	1.09
26364398--26364573	31	5.8	31	88	3	180	32	15	3	47	1.63
26364430--26364721	30	9.8	30	82	6	290	35	21	2	40	1.68
26364516--26364745	88	2.6	89	80	6	252	35	24	2	36	1.70
26364576--26364723	58	2.5	57	84	5	197	35	27	2	35	1.68
26369341--26369373	7	4.7	7	92	0	57	84	0	15	0	0.61
26369431--26369463	16	2.0	17	88	5	50	75	6	18	0	1.00
26371257--26371968	50	14.3	49	75	9	478	32	16	34	16	1.92
26371257--26371968	99	7.2	99	77	5	571	32	16	34	16	1.92
26371390--26371938	198	2.8	197	81	3	638	32	16	34	16	1.92
26371298--26372016	149	4.8	149	77	3	585	32	15	34	17	1.91
26371587--26372043	248	1.8	248	79	5	521	32	15	33	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26372321--26372854	39	13.7	38	70	12	225	22	30	20	26	1.98
26372358--26372777	78	5.4	78	84	3	479	22	30	21	25	1.99
26373519--26373595	17	4.6	17	86	1	111	37	1	3	57	1.26
26373519--26373593	34	2.2	33	93	4	132	37	1	4	57	1.26
26373529--26373596	6	11.8	6	73	9	52	38	1	4	55	1.29
26374878--26375196	30	10.7	30	79	4	279	34	18	3	43	1.67
26374847--26375196	59	5.9	59	80	9	324	34	18	3	43	1.67
26377146--26377185	19	2.2	18	86	4	53	30	2	2	65	1.19
26381458--26381496	17	2.3	17	86	0	51	17	12	23	46	1.83
26381486--26381576	41	2.2	41	90	0	137	29	6	27	36	1.82
26383430--26383487	21	2.8	20	79	7	71	55	24	8	12	1.64
26385898--26385978	25	3.5	24	67	23	73	18	2	30	48	1.61
26388268--26388305	14	2.7	14	95	0	67	31	2	21	44	1.66
26400673--26401048	42	9.2	42	86	6	524	28	30	17	23	1.97
26400673--26401048	81	4.6	81	90	1	581	28	30	17	23	1.97
26403978--26404028	18	2.8	18	79	5	59	29	27	19	23	1.98
26406957--26406982	12	2.2	12	100	0	52	23	7	19	50	1.73
26407709--26407755	24	2.0	24	83	8	60	48	6	14	29	1.69
26424512--26424558	24	2.0	24	83	8	60	48	6	14	29	1.69
26428419--26428443	12	2.1	12	100	0	50	72	0	28	0	0.86
26431255--26431351	38	2.6	38	98	0	185	29	29	18	21	1.97
26432688--26433239	216	2.5	218	81	8	613	34	11	12	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26432693--26433256	223	2.6	221	82	7	634	34	11	12	41	1.79
26437257--26437312	6	9.0	6	82	7	67	78	5	1	14	1.00
26440254--26440494	74	3.3	74	75	13	209	22	22	22	32	1.98
26440295--26440494	34	5.7	33	69	10	112	22	22	22	33	1.98
26440329--26440530	108	1.9	109	86	5	293	23	21	20	34	1.97
26440345--26440566	109	2.0	108	82	5	261	23	20	20	34	1.96
26442545--26442578	17	2.0	17	94	0	59	32	11	26	29	1.92
26447135--26447286	69	2.2	70	84	3	191	32	21	23	22	1.98
26448303--26448422	26	4.6	26	85	0	150	25	19	23	32	1.97
26448294--26448422	52	2.5	52	85	0	168	25	19	21	33	1.97
26453604--26453654	21	2.4	21	80	6	59	29	25	11	33	1.91
26455973--26456013	20	2.1	20	86	4	57	75	4	0	19	0.98
26460261--26460319	31	1.9	31	92	0	100	44	8	11	35	1.72
26461512--26461549	19	2.0	19	100	0	76	36	10	21	31	1.87
26462963--26463009	14	3.4	14	76	5	51	6	14	8	70	1.32
26464979--26465213	52	4.5	52	84	2	283	33	25	14	26	1.95
26464971--26465213	104	2.3	104	87	3	330	33	24	14	27	1.94
26471448--26471502	24	2.2	24	84	15	69	1	21	0	76	0.88
26484266--26484486	52	4.2	52	90	1	300	38	23	12	25	1.90
26484266--26484499	104	2.3	104	88	3	339	37	24	13	24	1.92
26490870--26490917	21	2.3	20	79	10	51	12	16	6	64	1.46
26491895--26491927	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26494515--26494578	31	2.1	29	86	11	85	34	0	1	64	1.03
26496996--26497028	14	2.2	16	89	10	52	21	15	0	63	1.30
26497827--26497885	31	1.9	31	89	0	91	45	10	6	37	1.65
26499968--26500069	50	2.0	50	100	0	204	41	9	23	25	1.85
26509939--26509978	2	20.5	2	89	5	64	47	2	0	50	1.14
26543773--26543842	9	8.2	8	76	16	61	77	1	1	20	0.93
26544440--26544491	21	2.5	21	87	0	68	36	26	15	21	1.93
26544471--26544593	63	2.0	63	98	0	237	34	24	16	25	1.95
26545198--26545283	35	2.5	35	90	3	129	23	25	13	37	1.92
26550330--26550467	40	3.4	40	88	5	197	25	23	8	42	1.83
26553875--26554006	25	5.2	25	77	6	90	33	25	15	25	1.95
26553890--26554006	50	2.3	50	80	2	128	35	23	15	25	1.94
26558529--26558562	14	2.3	15	90	5	52	47	20	0	32	1.51
26563007--26563074	23	2.9	24	68	4	66	25	5	20	48	1.72
26570666--26570723	29	2.0	29	90	6	91	53	24	6	15	1.66
26571183--26571237	13	4.2	13	75	13	58	47	20	14	18	1.83
26571183--26571241	20	3.0	20	78	7	66	45	18	15	20	1.85
26571321--26571371	25	2.0	25	85	7	68	19	17	29	33	1.95
26573500--26573541	22	1.9	22	85	9	59	21	4	0	73	1.01
26591132--26591165	18	1.9	17	88	5	50	55	8	11	23	1.63
26598242--26598284	20	2.1	21	86	4	61	39	16	9	34	1.80
26608533--26608590	18	3.2	18	92	0	89	17	18	24	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26617987--26618027	7	5.7	7	91	5	55	0	34	0	65	0.93
26617986--26618028	15	2.9	15	86	3	61	0	32	0	67	0.91
26618587--26618668	17	4.8	17	81	4	76	47	12	19	20	1.81
26633913--26633950	20	1.9	20	100	0	76	78	5	0	15	0.91
26636680--26636723	23	2.0	23	83	16	58	65	4	0	29	1.12
26645002--26645088	24	3.6	24	92	6	124	16	33	0	50	1.45
26645497--26645544	24	2.0	24	100	0	96	25	4	25	45	1.71
26647864--26647929	23	2.7	23	73	15	62	71	1	4	22	1.13
26648987--26649039	21	2.5	22	90	3	81	16	20	45	16	1.86
26649634--26649813	100	1.8	100	81	2	227	26	16	18	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135