genome.fa.s2.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  66  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19664728--19664875	69	2.1	69	97	0	278	29	21	16	31	1.96
19668610--19668649	8	5.1	8	84	3	55	52	0	32	15	1.43
19677013--19677088	35	2.2	35	88	4	109	27	23	22	26	1.99
19676878--19677077	110	1.8	110	84	4	278	32	20	21	26	1.98
19682231--19682342	38	3.0	38	90	1	172	30	17	20	31	1.96
19684096--19684126	16	1.9	16	93	0	53	61	0	16	22	1.34
19684925--19685022	38	2.6	37	82	7	119	29	14	25	30	1.95
19685049--19685119	37	1.9	37	85	5	99	22	22	28	26	1.99
19685169--19685208	20	2.0	21	90	5	64	57	10	5	27	1.52
19685558--19685598	18	2.3	18	95	4	75	0	19	0	80	0.71
19686155--19686202	17	2.8	17	74	0	51	50	10	18	20	1.76
19687467--19687497	16	1.9	16	93	0	53	61	0	16	22	1.34
19688247--19688333	36	2.3	38	80	7	99	32	16	22	28	1.96
19688363--19688442	37	2.2	37	83	0	106	32	16	23	27	1.96
19692719--19692755	13	2.7	14	87	8	58	5	37	0	56	1.22
19701094--19701129	17	2.1	17	94	0	63	22	11	8	58	1.59
19707698--19707735	20	1.9	20	88	0	58	34	31	7	26	1.85
19711234--19711273	20	2.0	21	90	5	64	25	5	22	47	1.71
19711240--19711285	20	2.3	20	81	3	58	23	4	21	50	1.67
19711524--19711572	20	2.4	21	80	16	66	30	2	2	65	1.15
19715798--19715836	16	2.8	13	79	20	51	28	20	10	41	1.85
19728579--19728636	28	2.1	28	100	0	116	29	17	17	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19738410--19738455	18	2.6	18	89	0	74	50	4	28	17	1.65
19778991--19779027	20	2.0	20	84	10	51	70	0	16	13	1.17
19787372--19787412	15	2.6	16	84	7	57	21	9	0	68	1.18
19815358--19815404	24	2.0	23	84	12	60	51	8	12	27	1.69
19821446--19821645	29	6.8	29	69	12	120	34	6	24	35	1.81
19821472--19821779	59	5.2	58	81	6	273	35	7	23	33	1.84
19821490--19821779	118	2.5	116	84	4	366	36	8	23	31	1.84
19821502--19821787	30	9.7	29	69	18	137	35	8	23	32	1.84
19822894--19822931	16	2.2	19	86	13	55	13	10	21	55	1.67
19822943--19823011	6	12.0	6	75	14	65	55	2	1	40	1.24
19822973--19823021	23	2.1	23	92	0	80	57	4	0	38	1.18
19822943--19823005	17	3.7	17	91	0	99	55	3	1	39	1.25
19822956--19823028	23	3.2	22	80	7	74	56	5	0	38	1.23
19823329--19824087	209	3.6	209	94	0	1302	23	24	17	34	1.96
19836228--19836565	59	5.8	59	80	5	364	35	7	23	34	1.82
19836321--19836466	29	5.0	29	65	14	93	36	8	22	32	1.84
19836238--19836565	117	2.8	117	79	5	367	34	7	24	34	1.83
19836457--19836553	29	3.3	29	75	15	101	34	6	27	31	1.82
19836472--19836565	30	3.2	30	75	14	104	31	4	28	35	1.77
19838382--19838450	6	12.0	6	77	14	74	53	2	1	42	1.24
19838395--19838469	23	3.2	22	85	9	80	56	4	0	40	1.18
19838382--19838444	17	3.7	17	86	0	90	53	3	1	41	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19838384--19838460	11	6.8	11	78	8	66	55	3	1	38	1.26
19843197--19843235	17	2.2	18	86	9	53	46	0	7	46	1.31
19859675--19859722	11	4.4	11	78	19	55	50	0	2	47	1.12
19859681--19859722	10	3.8	12	78	15	54	47	0	0	52	1.00
19864186--19864315	30	4.1	30	67	18	75	29	16	24	30	1.96
19873749--19873823	36	2.1	35	95	2	132	60	10	2	26	1.43
19875588--19875636	13	3.8	13	84	10	64	71	0	28	0	0.86
19875599--19875647	14	3.5	15	78	18	61	73	0	26	0	0.83
19875591--19875653	26	2.4	26	86	0	90	68	0	30	1	0.99
19877015--19877114	23	4.3	23	87	0	119	44	19	25	12	1.84
19884188--19884336	23	6.5	23	78	6	108	40	23	24	12	1.88
19890688--19890854	58	2.9	58	83	7	214	42	1	2	53	1.21
19891565--19891591	2	13.5	2	100	0	54	48	0	0	51	1.00
19895985--19896220	51	4.6	51	86	3	305	33	16	22	27	1.95
19900721--19900745	12	2.1	12	100	0	50	0	32	0	68	0.90
19907978--19908036	25	2.3	26	73	5	66	40	25	18	15	1.90
19909677--19909761	19	4.5	19	86	0	107	37	3	21	37	1.71
19909677--19909761	38	2.2	38	89	0	125	37	3	21	37	1.71
19920878--19920928	12	4.5	11	81	13	59	80	0	17	1	0.81
19920877--19920929	24	2.2	25	80	12	67	79	0	18	1	0.83
19928208--19928249	22	1.9	22	85	0	57	38	0	4	57	1.20
19930500--19930553	14	3.5	15	82	10	65	12	9	1	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19930499--19930560	29	2.2	28	82	8	72	16	8	1	74	1.13
19938798--19938845	25	2.0	24	84	12	62	37	2	4	56	1.30
19940424--19940467	23	2.0	23	86	4	63	54	13	9	22	1.67
19942579--19942622	23	2.0	23	86	4	63	54	13	9	22	1.67
19954612--19954724	45	2.5	45	82	0	136	28	22	24	24	1.99
19955039--19955082	19	2.3	19	84	0	52	36	6	25	31	1.82
19955056--19955090	19	1.9	18	88	11	54	42	5	20	31	1.75
19956640--19956677	18	2.1	18	90	0	58	36	7	13	42	1.73
19958131--19958228	24	4.1	24	100	0	196	20	12	25	41	1.87
19984209--19984304	21	4.6	21	88	2	131	32	26	12	29	1.93
19985495--19985531	19	1.9	19	88	0	56	35	18	5	40	1.74
19997401--19997438	17	2.2	17	95	0	67	21	10	13	55	1.67
19998026--19998064	16	2.4	16	82	0	51	76	2	20	0	0.90
19999781--19999882	45	2.3	45	84	0	132	31	20	22	25	1.98
20000196--20000261	19	3.5	19	85	0	87	34	6	22	36	1.79
20014250--20014463	101	2.1	102	86	2	306	31	9	14	43	1.78
20017534--20017608	37	2.0	37	100	0	150	24	26	12	37	1.90
20018755--20018784	10	2.8	11	90	10	53	20	20	6	53	1.67
20021896--20021949	26	2.1	26	82	0	63	31	25	18	24	1.97
20022843--20022956	61	1.9	60	82	7	142	24	17	3	54	1.59
20023379--20023586	102	2.0	102	93	3	357	31	12	15	40	1.84
20040068--20040118	24	2.1	24	81	0	57	76	7	5	9	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20068829--20068891	20	3.2	20	74	0	72	42	19	28	9	1.82
20078791--20078876	20	4.3	20	77	0	73	41	18	30	9	1.82
20085713--20085759	16	2.9	16	83	0	58	38	2	27	31	1.69
20112627--20112664	18	2.1	18	85	9	51	50	13	10	26	1.73
20125490--20125570	18	4.4	18	87	1	99	22	19	27	30	1.98
20126149--20126204	24	2.5	23	77	11	62	25	8	28	37	1.86
20132526--20132609	18	4.7	18	80	11	91	23	23	21	30	1.99
20132526--20132609	36	2.3	36	79	6	107	23	23	21	30	1.99
20134352--20134382	15	2.1	15	100	0	62	54	6	25	12	1.62
20140093--20140126	18	1.9	17	88	5	50	5	26	2	64	1.30
20142594--20142626	17	1.9	17	88	11	50	66	6	0	27	1.15
20147790--20147905	51	2.3	51	81	14	150	27	14	0	57	1.38
20147801--20147901	51	2.0	52	88	5	152	27	15	0	56	1.40
20148659--20149206	271	2.0	269	97	0	1033	38	13	13	34	1.84
20149270--20149671	137	2.9	138	92	0	653	46	4	6	42	1.51
20149999--20150046	21	2.3	21	78	7	53	47	2	0	50	1.12
20149986--20150144	58	2.7	58	84	10	189	50	1	1	46	1.17
20150105--20150155	24	2.1	24	82	10	59	56	0	5	37	1.23
20153733--20153919	59	3.2	59	96	0	338	28	9	28	33	1.89
20157034--20157079	23	2.0	23	95	0	83	58	17	19	4	1.55
20159672--20159762	31	3.1	30	77	12	82	52	3	1	42	1.24
20159712--20159995	10	29.0	9	67	20	87	58	4	2	34	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20159951--20159995	18	2.4	19	89	10	67	64	2	0	33	1.06
20159924--20159995	19	3.8	18	76	20	67	62	4	0	33	1.14
20159924--20159994	28	2.5	29	80	17	87	61	4	0	33	1.15
20160087--20160169	35	2.4	35	79	4	87	10	22	21	44	1.83
20161938--20162073	26	5.2	26	76	0	119	33	13	19	32	1.92
20161942--20162073	52	2.5	51	80	4	149	34	14	19	31	1.92
20166045--20166100	8	6.1	9	75	19	53	57	5	0	37	1.22
20166045--20166100	17	3.1	17	80	14	58	57	5	0	37	1.22
20169716--20169768	21	2.6	21	87	3	72	35	9	18	35	1.84
20169731--20169775	21	2.1	21	100	0	90	37	8	17	35	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135