genome.fa.s2.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  128  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38982527--38982583	20	3.0	20	85	12	75	40	0	5	54	1.23
38983315--38983342	7	4.0	7	100	0	56	57	0	0	42	0.99
38990875--38990915	6	6.8	6	94	0	73	46	0	36	17	1.48
38993916--38993969	22	2.5	22	90	0	81	7	7	18	66	1.40
38993916--38993974	11	5.4	11	77	0	64	10	6	16	66	1.43
39001527--39001581	29	1.9	28	85	10	76	67	1	1	29	1.11
39009362--39009419	30	1.9	30	85	0	80	56	1	6	34	1.36
39009405--39009438	18	1.9	17	88	5	50	61	2	0	35	1.11
39009464--39009522	19	3.2	18	72	11	57	64	1	1	32	1.13
39009368--39009574	104	2.0	104	79	7	224	56	1	3	37	1.29
39012746--39012801	28	2.0	27	86	3	76	33	0	8	57	1.30
39014094--39014123	12	2.4	12	94	5	51	0	16	0	83	0.65
39015104--39015150	3	16.0	3	95	4	87	31	0	0	68	0.90
39017587--39017630	23	1.9	23	85	0	61	11	13	15	59	1.62
39023705--39023737	17	1.9	17	88	11	50	24	6	0	69	1.10
39024152--39024214	31	2.0	31	93	0	108	47	12	15	23	1.80
39024377--39024409	3	11.0	3	100	0	66	66	0	0	33	0.92
39026854--39026909	29	2.0	29	83	13	73	64	12	1	21	1.36
39028797--39028837	21	2.0	21	90	0	64	14	56	4	24	1.58
39032677--39032709	15	2.1	16	94	5	59	42	0	0	57	0.98
39033162--39033242	41	2.0	41	100	0	162	40	12	12	34	1.80
39038722--39038766	21	2.3	19	84	7	54	66	2	0	31	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39038923--39038972	17	3.1	16	81	16	59	52	0	2	46	1.12
39039214--39039245	3	10.7	3	100	0	64	68	0	0	31	0.90
39042864--39042924	29	2.1	29	81	6	70	40	14	9	34	1.79
39043460--39043501	2	21.5	2	95	4	77	50	0	0	50	1.00
39048436--39048483	24	1.9	26	91	8	82	47	6	0	45	1.27
39050498--39050535	6	6.3	6	100	0	76	18	0	81	0	0.69
39056509--39056547	20	2.0	20	89	0	60	38	25	2	33	1.70
39068682--39068726	3	15.0	3	90	9	74	0	33	0	66	0.92
39068675--39068720	15	3.1	15	87	9	67	0	32	2	65	1.05
39069477--39069504	3	9.3	3	100	0	56	32	32	0	35	1.58
39072059--39072086	13	2.2	13	100	0	56	64	7	0	28	1.20
39074307--39074371	6	10.8	6	74	12	62	40	3	0	56	1.15
39074296--39074370	17	4.6	17	83	9	102	37	2	1	58	1.20
39075654--39075790	23	6.0	23	82	3	152	40	23	24	11	1.88
39075630--39075790	69	2.3	67	78	11	162	39	22	25	11	1.88
39075630--39075790	23	6.9	23	80	6	139	39	22	25	11	1.88
39077615--39077659	18	2.6	18	76	16	51	60	0	2	37	1.09
39078590--39078904	59	5.4	58	88	6	433	33	31	2	33	1.71
39078593--39078909	117	2.7	116	89	3	465	33	30	2	33	1.73
39078746--39078905	30	5.4	30	70	15	111	31	29	2	36	1.71
39080398--39080576	30	6.0	30	81	8	100	39	3	18	38	1.68
39080434--39080635	30	6.7	30	86	5	273	39	3	17	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39080411--39080635	60	3.8	58	87	4	256	40	3	17	39	1.67
39082512--39082555	17	2.5	18	77	7	54	47	4	0	47	1.22
39082540--39082579	17	2.4	16	84	12	53	47	5	0	47	1.24
39083350--39083635	54	5.3	54	96	0	527	23	9	39	27	1.86
39083366--39083452	27	3.2	27	62	12	70	20	10	40	28	1.85
39084027--39084101	31	2.5	31	82	10	109	49	10	10	29	1.71
39084998--39085041	20	2.2	20	84	8	54	50	2	0	47	1.13
39085717--39085772	25	2.3	24	84	9	69	33	3	1	60	1.24
39090793--39090817	13	1.9	13	100	0	50	24	0	12	64	1.27
39091214--39092168	93	10.5	93	93	5	1670	19	5	49	25	1.70
39091214--39092212	360	2.8	360	92	5	1611	19	6	49	25	1.70
39092297--39092342	21	2.4	19	86	13	67	21	17	41	19	1.90
39092303--39092343	21	2.0	21	100	0	82	19	19	41	19	1.91
39092249--39092401	75	2.0	75	100	0	306	21	13	40	24	1.89
39092324--39092434	54	2.1	54	96	0	204	22	9	41	26	1.85
39093659--39093701	20	2.2	20	91	4	70	58	4	0	37	1.19
39096207--39096244	20	1.9	19	85	15	51	63	5	5	26	1.37
39105359--39105419	17	3.5	17	73	8	68	44	4	0	50	1.23
39105359--39105429	36	2.0	36	97	0	133	43	7	0	49	1.29
39105723--39105772	26	1.9	26	100	0	100	8	24	30	38	1.84
39106089--39106141	21	2.5	21	87	0	79	0	45	20	33	1.52
39106127--39106283	65	2.4	66	84	3	219	15	24	16	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39107942--39108003	29	2.1	31	87	6	92	37	4	9	48	1.57
39110061--39110101	21	1.9	22	85	14	59	56	12	7	24	1.61
39117903--39117929	14	1.9	14	100	0	54	14	7	14	62	1.51
39117941--39117975	17	1.9	19	88	11	56	20	2	11	65	1.37
39121046--39121097	25	2.1	25	96	0	95	38	13	13	34	1.84
39124281--39124323	22	1.9	23	85	4	61	44	2	11	41	1.53
39125483--39125535	18	2.9	18	83	8	54	35	0	1	62	1.06
39125483--39125536	20	2.8	20	86	5	67	35	0	1	62	1.06
39126736--39126764	2	14.5	2	100	0	58	48	0	0	51	1.00
39135234--39135275	22	2.0	21	85	4	57	26	11	9	52	1.68
39139118--39139151	6	5.7	6	96	0	50	17	41	0	41	1.50
39139118--39139154	12	3.1	12	92	0	56	16	43	0	40	1.48
39140284--39140326	22	1.9	23	85	4	61	44	2	11	41	1.53
39141307--39141390	30	2.6	32	81	14	102	46	1	1	51	1.16
39141307--39141393	31	2.8	30	84	10	104	48	1	1	49	1.16
39141307--39141400	30	3.0	30	84	10	93	46	1	1	51	1.15
39142289--39142339	25	2.1	25	92	3	86	56	15	11	15	1.66
39145255--39145318	24	2.6	23	70	20	58	50	0	6	43	1.27
39155751--39155780	2	15.0	2	100	0	60	50	0	50	0	1.00
39161551--39161612	30	2.1	29	85	11	81	41	3	14	40	1.62
39164523--39164574	24	2.1	24	82	3	59	46	5	1	46	1.38
39165187--39165244	27	2.2	25	78	6	71	58	5	3	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39172398--39172494	46	2.1	46	94	3	169	41	13	10	35	1.78
39177890--39177935	23	2.0	22	84	12	58	50	4	0	45	1.21
39195538--39195564	4	6.8	4	100	0	54	25	0	0	74	0.83
39198283--39198427	23	6.3	23	89	1	202	11	22	24	42	1.86
39198283--39198427	68	2.1	69	85	1	202	11	22	24	42	1.86
39198283--39198477	23	8.5	23	82	8	191	11	23	22	43	1.86
39200362--39200400	18	2.1	19	90	4	62	48	7	0	43	1.31
39205657--39206288	312	2.0	312	94	0	1113	37	18	23	20	1.94
39213345--39213387	22	2.0	22	86	9	61	72	11	2	13	1.22
39221320--39221385	26	2.6	26	88	7	91	40	21	7	30	1.81
39225108--39225188	33	2.4	36	76	15	93	48	1	2	48	1.23
39227013--39227047	17	2.0	18	88	5	54	0	37	0	62	0.95
39227145--39227179	14	2.5	14	85	0	52	62	2	0	34	1.10
39229857--39229890	11	3.2	11	83	8	52	29	8	5	55	1.54
39232215--39232259	22	2.1	22	84	8	58	60	11	2	26	1.42
39236255--39236298	22	2.0	22	95	0	79	15	15	22	45	1.85
39247161--39247207	10	4.5	11	86	2	62	25	0	0	74	0.82
39247620--39247649	2	15.0	2	100	0	60	50	0	0	50	1.00
39248570--39249270	272	2.6	265	83	6	815	44	7	23	23	1.80
39252122--39252189	30	2.2	31	79	7	77	54	7	2	35	1.43
39262064--39262097	6	5.5	6	86	6	50	76	0	0	23	0.79
39262067--39262094	12	2.3	12	100	0	56	78	0	0	21	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39273694--39273735	21	2.0	22	85	4	59	40	33	2	23	1.68
39274142--39274193	16	3.2	16	75	20	54	57	1	1	38	1.21
39275627--39275684	29	2.0	29	86	0	80	27	12	29	31	1.92
39275921--39275966	19	2.3	19	85	7	56	36	2	0	60	1.09
39280085--39280937	431	2.0	431	93	0	1458	37	11	11	39	1.77
39284773--39284825	26	2.0	26	81	7	61	50	13	0	35	1.41
39292495--39292555	30	1.9	30	83	9	77	36	1	11	50	1.48
39292495--39292555	31	1.9	31	83	9	79	36	1	11	50	1.48
39296264--39296324	27	2.3	27	97	0	113	44	16	13	26	1.84
39296377--39296414	8	4.6	8	84	15	51	47	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135