genome.fa.s2.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  61  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17862914--17862962	20	2.4	20	86	13	73	28	2	4	65	1.22
17871499--17871545	22	2.2	22	88	3	69	74	8	6	10	1.22
17872436--17872606	57	2.9	57	82	9	166	47	11	16	24	1.79
17877448--17877490	15	3.1	14	83	10	52	34	6	11	46	1.67
17877453--17877491	13	2.8	13	88	7	51	38	5	10	46	1.60
17878227--17878348	61	2.0	61	100	0	244	32	22	16	27	1.96
17882206--17882437	41	5.6	41	89	4	324	37	12	23	26	1.90
17882206--17882466	41	6.4	41	86	7	307	38	11	24	26	1.88
17886999--17887382	123	3.1	123	83	3	479	39	11	22	26	1.88
17886999--17887342	41	8.4	41	87	0	456	40	11	22	25	1.88
17886999--17887382	41	9.4	40	82	7	247	39	11	22	26	1.88
17891960--17892319	41	8.6	41	86	6	483	39	11	23	26	1.88
17891966--17892319	128	2.8	128	85	5	463	39	11	24	25	1.88
17891960--17892264	169	1.8	169	94	1	540	40	10	23	26	1.87
17896648--17896696	15	3.3	15	75	13	57	20	6	2	71	1.18
17899261--17899305	21	2.1	21	88	8	65	37	4	20	37	1.73
17904963--17905025	16	3.6	16	71	19	54	14	17	33	34	1.90
17904958--17905216	37	7.0	37	90	0	392	15	18	30	35	1.92
17909188--17909246	21	2.8	22	80	19	72	15	13	30	40	1.86
17913466--17913730	83	3.1	83	84	6	336	29	28	18	24	1.98
17913466--17913730	43	6.3	43	84	3	340	29	28	18	24	1.98
17913477--17913722	85	2.9	83	87	4	325	28	28	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17917699--17917737	13	2.8	13	88	7	51	38	2	10	48	1.51
17919975--17920003	9	3.3	9	95	4	51	10	6	0	82	0.83
17919967--17920010	17	2.5	18	77	3	54	20	9	0	70	1.14
17924521--17924557	19	1.9	19	88	0	56	45	8	10	35	1.69
17931497--17931562	30	2.3	28	79	10	71	53	10	7	28	1.63
17931511--17931580	30	2.3	30	85	4	88	44	8	11	35	1.71
17937616--17937701	23	3.7	22	85	11	109	43	23	23	10	1.84
17937596--17937701	23	4.6	22	81	10	97	43	20	24	11	1.85
17937611--17937701	48	1.9	46	86	4	128	43	21	23	10	1.84
17944028--17944067	20	2.0	20	85	0	53	42	12	5	40	1.64
17944709--17944868	23	6.9	23	85	2	185	43	20	23	12	1.86
17949953--17949998	17	2.7	17	93	0	65	28	15	28	28	1.96
17951805--17951962	30	5.3	30	75	8	144	37	6	23	32	1.80
17951803--17951983	60	3.0	59	76	5	177	36	6	22	34	1.80
17951807--17951973	90	1.9	90	84	5	230	37	7	20	34	1.81
17951805--17951981	30	5.9	30	74	10	139	36	6	22	34	1.81
17953741--17954114	78	4.7	78	81	11	341	23	19	25	31	1.98
17953766--17954164	38	10.1	40	77	12	321	25	18	25	31	1.98
17953783--17954178	200	2.0	198	86	5	550	24	18	25	31	1.98
17953982--17954175	78	2.5	80	83	4	232	24	19	26	29	1.98
17954435--17954924	49	10.0	49	72	6	231	21	28	14	34	1.93
17954444--17954924	98	4.9	98	83	0	575	21	28	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17955310--17955531	112	2.0	112	90	0	354	37	11	21	29	1.88
17956710--17956752	19	2.2	20	83	4	52	6	18	0	74	1.04
17960983--17961154	30	5.8	30	81	2	177	33	5	23	37	1.78
17960968--17961165	60	3.3	59	75	11	167	35	5	22	36	1.78
17960968--17961180	89	2.4	90	80	3	207	36	5	22	35	1.78
17963283--17963333	25	2.0	24	85	7	66	39	5	13	41	1.69
17966363--17966392	7	4.4	7	91	8	53	33	26	13	26	1.93
17979558--17979738	37	4.9	37	88	1	247	21	14	24	39	1.90
17980444--17980544	51	2.0	51	92	0	166	27	19	33	18	1.96
17980537--17980569	11	3.0	11	95	0	57	27	30	27	15	1.96
17984205--17984253	20	2.5	20	79	0	62	40	6	0	53	1.26
17986747--17986784	15	2.5	15	83	12	51	28	47	0	23	1.52
17989784--17990144	30	12.2	31	72	17	163	35	28	4	31	1.77
17989784--17990158	29	12.7	30	74	16	177	35	27	4	31	1.78
17989785--17990156	88	4.2	88	75	14	256	35	27	4	31	1.78
17989879--17990110	118	2.0	117	92	2	385	35	28	5	30	1.79
17989789--17990136	59	5.9	59	71	17	217	35	27	4	31	1.77
17990119--17990194	29	2.6	29	89	0	107	32	22	9	35	1.86
17989885--17990187	117	2.6	117	83	6	339	36	27	5	30	1.81
18003327--18003489	55	2.9	55	82	2	191	58	7	3	30	1.42
18003409--18003454	14	3.4	14	73	11	51	60	0	2	36	1.09
18003385--18003476	24	3.6	24	73	19	87	63	3	1	32	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18003775--18003823	23	2.1	23	85	7	64	59	0	2	38	1.09
18011768--18011828	22	2.8	22	82	0	77	22	37	21	18	1.94
18012481--18012509	2	14.5	2	100	0	58	51	0	0	48	1.00
18014999--18015045	23	2.0	23	95	0	85	23	10	17	48	1.77
18015004--18015055	23	2.3	23	86	0	68	25	7	21	46	1.77
18019860--18019998	39	3.6	38	82	3	161	25	12	23	37	1.91
18020640--18020666	12	2.2	12	100	0	54	44	7	7	40	1.60
18021313--18021337	7	3.6	7	100	0	50	44	40	0	16	1.47
18029626--18029824	55	3.6	55	76	2	184	24	15	24	35	1.94
18038484--18038531	21	2.3	22	82	10	64	10	37	2	50	1.49
18039426--18039455	14	2.1	14	93	0	51	30	40	3	26	1.72
18048735--18048788	7	7.7	7	74	0	54	18	22	27	31	1.97
18049819--18049853	5	6.6	5	87	12	52	17	2	0	80	0.84
18049819--18049854	17	2.2	16	95	5	63	16	2	0	80	0.83
18051001--18051039	19	2.1	19	85	0	51	56	10	0	33	1.33
18053590--18053690	39	2.7	38	83	7	116	31	14	13	39	1.86
18053617--18053696	39	2.1	39	97	0	151	30	13	11	45	1.79
18054531--18054569	11	3.5	11	79	6	51	79	0	7	12	0.93
18063715--18063882	30	5.6	30	78	7	155	41	6	20	31	1.78
18063749--18063882	58	2.3	60	83	5	157	38	7	21	32	1.81
18063715--18063884	29	5.7	29	76	8	130	40	6	21	31	1.79
18064512--18064558	23	2.0	23	87	0	67	6	10	4	78	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18074578--18074627	25	2.0	25	92	0	82	62	10	10	18	1.54
18078052--18078227	52	3.4	52	87	3	239	35	25	14	24	1.93
18078469--18078495	3	9.0	3	100	0	54	66	0	0	33	0.92
18080450--18080499	21	2.4	21	83	6	66	32	26	14	28	1.94
18081383--18081565	52	3.5	53	82	10	195	34	24	15	25	1.94
18084653--18084830	52	3.4	52	88	3	234	34	23	15	26	1.94
18085861--18085893	16	2.1	16	94	0	57	24	18	3	54	1.57
18097978--18098067	28	3.3	27	78	18	89	61	6	5	26	1.43
18097978--18098067	27	3.3	27	80	13	80	61	6	5	26	1.43
18098240--18098301	17	3.5	17	74	18	54	74	4	4	16	1.17
18098239--18098306	21	3.3	20	80	8	66	75	4	4	16	1.13
18098240--18098306	4	16.5	4	80	9	64	74	4	4	16	1.14
18098363--18098398	19	2.0	19	89	10	58	61	5	11	22	1.50
18101470--18101628	87	1.8	86	83	1	210	37	21	14	27	1.92
18107709--18107801	36	2.6	36	82	1	114	21	30	15	33	1.94
18110098--18110128	16	1.9	16	93	0	53	61	0	16	22	1.34
18110930--18110987	26	2.2	27	81	9	75	27	27	20	24	1.99
18114192--18114222	16	1.9	16	93	0	53	61	0	16	22	1.34
18115440--18115632	103	1.9	103	96	0	359	26	22	20	31	1.98
18117474--18117540	26	2.6	26	95	0	116	26	19	22	31	1.98
18117605--18117688	36	2.3	37	82	10	109	27	19	29	23	1.98
18122860--18122963	36	2.9	36	82	1	136	21	25	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18122984--18124166	591	2.0	591	98	0	2285	33	22	11	32	1.90
18126347--18126395	19	2.5	19	83	3	62	30	6	0	63	1.19
18126460--18126500	18	2.2	19	86	4	57	24	4	0	70	1.06
18126465--18126504	20	2.1	20	86	9	57	30	2	0	67	1.04
18126487--18126543	27	2.1	27	87	3	80	35	1	1	61	1.17
18126502--18126555	27	2.0	27	81	0	63	35	1	1	61	1.18
18138320--18138373	28	1.9	28	88	0	81	24	27	14	33	1.94
18141057--18141216	50	3.2	50	74	7	155	35	19	16	28	1.94
18141055--18141217	49	3.3	48	73	10	148	35	19	16	28	1.94
18141057--18141333	100	2.8	100	78	7	285	33	20	18	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135