genome.fa.s2.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  52  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14202317--14202483	28	6.0	28	78	4	142	25	14	20	38	1.91
14202325--14202481	56	2.8	56	85	0	199	23	15	20	40	1.90
14202325--14202483	84	1.9	83	84	3	212	23	15	20	40	1.90
14207339--14207373	3	11.7	3	100	0	70	34	0	0	65	0.93
14207372--14207403	3	10.7	3	100	0	64	34	31	0	34	1.58
14207589--14207804	23	9.4	23	85	0	297	45	14	6	34	1.69
14211300--14211344	6	7.5	6	89	0	63	22	31	0	46	1.52
14228729--14228771	13	3.2	13	81	15	52	32	2	0	65	1.06
14228726--14228773	14	3.5	14	81	16	55	33	2	0	64	1.05
14248156--14248217	31	2.0	31	100	0	124	64	9	6	19	1.45
14248158--14248208	15	3.3	15	69	15	50	68	9	5	15	1.36
14248157--14248208	16	3.3	16	69	15	54	69	9	5	15	1.35
14250928--14250975	23	2.1	23	84	7	62	47	2	2	47	1.25
14251371--14251399	6	4.8	6	100	0	58	34	0	0	65	0.93
14251852--14251897	24	2.0	24	86	4	67	26	10	8	54	1.64
14253353--14253428	21	3.7	21	71	16	68	34	25	11	28	1.91
14260716--14260768	21	2.5	21	79	11	56	30	22	15	32	1.94
14274216--14274240	12	2.1	12	100	0	50	64	0	36	0	0.94
14281613--14281659	18	2.8	16	81	12	58	70	6	0	23	1.10
14281770--14281895	30	4.2	29	78	8	112	38	4	19	36	1.73
14281834--14281895	29	2.1	29	90	3	97	41	3	16	38	1.64
14283282--14283600	50	6.3	50	67	13	161	26	20	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14283285--14283600	151	2.1	151	90	1	499	26	20	17	36	1.94
14283436--14283650	101	2.1	101	79	3	227	26	22	15	34	1.95
14283703--14283912	40	5.3	40	76	11	193	26	15	25	32	1.96
14283783--14283951	79	2.1	79	84	2	223	26	15	26	32	1.95
14283703--14283952	119	2.1	118	86	6	337	26	15	25	33	1.95
14283993--14284116	50	2.5	51	78	10	148	23	25	16	34	1.95
14293465--14293952	123	4.0	119	86	5	658	44	7	11	37	1.68
14295914--14295952	20	2.0	20	85	5	53	56	5	7	30	1.49
14296051--14296120	37	1.9	36	83	13	90	42	4	0	52	1.20
14296431--14296549	59	2.0	59	96	0	220	38	8	26	26	1.85
14304357--14304390	12	2.8	12	95	0	59	35	0	44	20	1.52
14304872--14304905	17	2.0	17	88	0	50	20	8	5	64	1.43
14308477--14308531	20	2.7	21	78	16	53	41	10	0	47	1.39
14311725--14311784	30	2.0	30	100	0	120	30	30	10	30	1.90
14315666--14315715	21	2.5	20	84	15	59	42	8	0	50	1.32
14319919--14319981	7	9.4	7	78	13	62	0	52	0	47	1.00
14319882--14319973	26	3.5	27	80	14	95	1	53	0	45	1.07
14319880--14319983	39	2.6	39	84	4	120	0	52	0	46	1.07
14319882--14319979	20	5.0	19	75	14	67	1	53	0	45	1.07
14319897--14319983	13	6.7	13	75	10	88	0	51	0	48	1.00
14319923--14319981	6	9.2	6	80	14	64	0	52	0	47	1.00
14322316--14322358	18	2.3	18	92	4	68	48	18	6	25	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14323185--14323342	78	2.0	78	100	0	316	28	29	15	26	1.96
14324883--14325000	40	2.9	40	80	6	96	33	16	18	31	1.93
14326149--14326239	41	2.2	41	84	1	112	40	14	19	25	1.89
14326286--14326366	35	2.3	37	82	10	114	54	6	2	37	1.39
14326387--14326535	76	2.0	76	91	2	246	33	32	6	26	1.83
14330265--14330433	43	3.9	43	77	3	153	28	18	23	29	1.98
14333642--14333676	17	2.1	17	88	0	52	20	2	2	74	1.08
14338435--14338528	30	3.1	30	84	6	127	9	17	25	47	1.77
14341548--14341613	34	1.9	34	93	0	114	18	34	3	43	1.65
14346833--14346891	17	3.5	17	68	25	52	18	35	3	42	1.67
14346834--14346900	34	2.0	34	93	0	116	17	37	2	41	1.65
14357597--14357628	11	2.8	12	90	9	57	31	31	18	18	1.95
14374067--14374163	17	5.6	17	82	1	95	22	21	10	45	1.82
14374106--14374183	34	2.3	34	82	4	86	20	16	16	46	1.85
14377590--14377912	158	2.1	157	81	4	373	31	23	21	23	1.98
14379555--14379662	23	4.6	23	85	6	128	42	22	25	10	1.84
14382822--14382855	17	1.9	18	88	5	52	8	26	2	61	1.40
14405391--14405436	19	2.3	20	92	3	76	32	13	30	23	1.93
14405862--14405927	33	2.0	33	85	5	89	36	22	6	34	1.79
14408522--14408599	20	3.9	20	76	3	68	28	10	29	32	1.90
14408786--14408837	20	2.6	20	81	0	59	28	9	30	30	1.89
14411585--14411707	30	4.1	30	80	1	122	23	31	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14417818--14417856	2	19.5	2	100	0	78	51	0	0	48	1.00
14418870--14419017	74	2.0	74	98	1	289	28	20	8	43	1.80
14418741--14419146	203	2.0	202	99	0	794	29	19	10	40	1.85
14418943--14419195	129	2.0	130	98	0	490	29	19	11	39	1.88
14426582--14426614	17	1.9	17	93	0	57	51	9	18	21	1.73
14436600--14436638	20	2.0	20	89	0	60	12	5	10	71	1.28
14440798--14441169	54	7.4	53	78	12	278	22	28	16	33	1.95
14440800--14441169	52	7.4	52	78	12	341	22	28	16	33	1.95
14441017--14441141	42	3.0	42	93	0	205	23	31	15	30	1.95
14440776--14441136	24	14.7	24	64	19	86	21	28	16	33	1.95
14441118--14441172	28	2.0	28	82	7	67	20	25	18	36	1.94
14443247--14443277	10	3.1	10	95	0	53	19	38	0	41	1.51
14443619--14443655	17	2.1	18	90	5	58	27	2	10	59	1.44
14444502--14444645	55	2.6	56	87	2	191	31	26	16	25	1.96
14452789--14453072	52	5.5	52	88	0	397	27	13	22	36	1.92
14452858--14452939	26	3.2	26	66	13	69	29	12	21	36	1.90
14455505--14455547	20	2.2	20	87	8	61	39	16	18	25	1.91
14479895--14479944	20	2.4	21	81	15	52	44	8	0	48	1.32
14481869--14481907	21	1.9	21	94	5	71	43	15	15	25	1.86
14484255--14484441	52	3.6	52	88	2	268	27	12	22	36	1.91
14486774--14486803	13	2.3	13	94	0	51	33	3	6	56	1.42
14488566--14488594	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14496155--14496193	12	3.6	12	77	22	50	7	5	12	74	1.20
14496123--14496215	35	2.7	34	80	5	89	8	6	15	69	1.33
14496157--14496226	11	6.2	11	80	5	68	5	2	15	75	1.11
14496154--14496205	20	2.5	20	84	9	70	7	3	13	75	1.17
14496158--14496234	11	7.0	11	77	8	59	7	2	16	72	1.19
14496878--14496917	17	2.2	19	91	8	66	67	0	0	32	0.91
14497167--14497243	31	2.6	29	82	12	84	50	2	1	45	1.23
14497195--14497255	30	2.1	30	87	3	88	52	0	1	45	1.10
14497506--14497543	18	2.1	19	85	5	51	50	2	2	44	1.30
14497979--14498019	21	2.0	21	90	0	64	58	17	12	12	1.63
14498436--14498460	7	3.6	7	100	0	50	36	0	0	64	0.94
14512564--14512613	22	2.3	22	82	0	64	28	2	20	50	1.59
14512576--14512618	22	2.0	22	85	0	59	23	0	20	55	1.43
14512623--14512730	43	2.6	40	81	14	112	24	2	14	58	1.50
14512657--14512744	43	2.0	43	91	0	140	25	2	12	60	1.44
14515334--14515382	23	2.1	23	84	3	62	63	0	10	26	1.26
14519914--14520006	47	2.0	47	91	0	150	33	16	18	32	1.93
14540237--14540325	36	2.5	36	79	0	106	33	6	23	35	1.81
14544460--14544496	9	4.2	9	83	16	51	0	21	0	78	0.75
14546321--14546412	45	2.0	45	97	0	175	19	23	21	34	1.96
14557559--14557603	13	3.4	13	84	3	54	31	20	31	17	1.96
14557549--14557603	26	2.1	27	82	3	67	34	18	27	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14565929--14565991	33	1.9	33	93	0	108	49	11	20	19	1.78
14566234--14566327	45	2.1	45	100	0	188	29	17	23	29	1.97
14567649--14567692	17	2.6	17	81	0	52	22	20	27	29	1.99
14573608--14573698	25	3.6	25	83	5	103	30	21	18	28	1.97
14582264--14582296	12	2.8	12	95	0	57	75	9	15	0	1.03
14582344--14582382	16	2.4	17	86	4	53	76	5	2	15	1.06
14582352--14582388	17	2.2	16	90	4	56	75	5	0	18	0.99
14583395--14583489	32	3.0	32	87	0	136	38	17	11	31	1.86
14586719--14586757	13	2.9	14	80	7	53	5	28	0	66	1.12
14588818--14588861	23	2.0	23	86	13	65	25	13	2	59	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135