genome.fa.s2.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  133  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41070701--41070742	20	2.1	20	82	8	50	52	0	0	47	1.00
41081667--41081694	2	14.0	2	100	0	56	50	0	0	50	1.00
41081694--41081724	2	15.5	2	100	0	62	51	0	48	0	1.00
41083674--41083703	3	10.0	3	100	0	60	33	0	0	66	0.92
41085271--41085377	49	2.3	46	83	4	133	38	12	7	42	1.71
41088993--41089389	199	2.0	198	96	0	731	41	13	13	30	1.84
41091367--41091407	17	2.5	16	84	4	55	34	0	0	65	0.93
41091378--41091428	23	2.2	23	82	0	57	39	1	0	58	1.09
41091688--41091738	23	2.2	23	89	0	75	29	23	5	41	1.78
41093683--41093954	140	1.9	140	90	0	436	20	9	23	45	1.81
41093823--41094239	197	2.1	195	87	1	591	25	12	22	39	1.89
41105731--41105787	28	2.0	29	89	3	89	45	5	12	36	1.64
41114253--41114288	17	2.1	18	89	5	56	30	2	5	61	1.33
41120852--41120915	32	2.1	32	82	5	78	51	4	9	34	1.55
41121071--41121111	2	20.5	2	100	0	82	51	0	0	48	1.00
41126496--41126528	14	2.4	14	100	0	66	42	0	21	36	1.53
41127328--41127429	50	2.0	50	100	0	204	45	7	17	29	1.77
41127336--41127449	50	2.3	50	87	3	149	47	7	17	27	1.75
41143203--41143544	75	4.6	75	94	0	585	14	20	28	35	1.92
41153838--41153871	15	2.3	15	90	5	52	73	0	2	23	0.97
41154283--41154375	28	3.4	28	72	13	95	39	11	4	44	1.61
41154276--41154384	52	2.0	54	91	5	177	38	11	4	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41154540--41154584	23	2.0	23	86	0	63	53	0	13	33	1.40
41154786--41154820	18	2.0	18	88	5	54	48	0	0	51	1.00
41160890--41160968	31	2.5	31	82	9	90	26	18	8	45	1.79
41161141--41161212	31	2.3	31	95	0	126	45	12	15	26	1.81
41174930--41174967	20	1.9	20	84	10	51	26	5	2	65	1.27
41188646--41188677	3	10.7	3	100	0	64	68	0	0	31	0.90
41192704--41192746	18	2.4	18	84	0	59	25	32	6	34	1.83
41192863--41192898	3	12.0	3	93	0	54	27	33	5	33	1.80
41192769--41193139	183	2.0	180	92	1	607	27	26	16	28	1.97
41199632--41199678	23	2.0	23	84	8	60	57	0	2	40	1.11
41199651--41199699	14	3.4	14	80	8	55	46	0	2	51	1.12
41201483--41201535	23	2.4	22	83	3	70	15	24	18	41	1.89
41207922--41207948	13	2.1	13	100	0	54	0	7	0	92	0.38
41214137--41214171	2	17.5	2	100	0	70	0	48	0	51	1.00
41225022--41225201	68	2.8	66	90	8	266	41	18	15	24	1.89
41229340--41229414	22	3.3	22	69	10	62	46	1	0	52	1.09
41230842--41230981	69	2.0	69	95	0	253	30	23	9	36	1.86
41231275--41231309	13	2.7	13	100	0	70	37	22	25	14	1.92
41238036--41238099	31	2.1	31	87	0	92	40	12	15	31	1.85
41246627--41246887	30	8.7	29	89	4	346	35	4	24	35	1.76
41246637--41246887	90	2.8	89	90	2	387	35	4	23	36	1.76
41248560--41248615	15	3.8	15	77	20	64	12	10	55	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41248781--41248888	6	18.0	6	74	17	82	49	1	0	48	1.18
41248824--41248873	25	2.0	25	88	0	73	54	4	0	42	1.19
41248817--41248880	31	2.1	31	91	5	103	53	3	0	43	1.16
41248795--41248888	42	2.3	43	83	5	113	50	2	0	47	1.13
41248818--41248888	17	4.4	16	79	16	85	54	2	0	42	1.14
41249249--41249975	68	10.6	68	92	1	1152	27	20	17	34	1.95
41249254--41249975	273	2.6	273	96	1	1315	27	20	17	34	1.95
41261935--41262316	30	12.8	29	92	1	516	34	3	26	35	1.75
41261935--41262316	60	6.4	60	92	1	608	34	3	26	35	1.75
41261935--41262316	90	4.2	90	92	2	608	34	3	26	35	1.75
41262200--41262254	19	3.3	19	63	36	54	29	0	27	43	1.55
41263989--41264044	15	3.8	15	77	20	64	12	10	55	21	1.67
41264210--41264317	6	18.0	6	74	17	82	49	1	0	48	1.18
41264253--41264302	25	2.0	25	88	0	73	54	4	0	42	1.19
41264246--41264309	31	2.1	31	91	5	103	53	3	0	43	1.16
41264224--41264317	42	2.3	43	83	5	113	50	2	0	47	1.13
41264247--41264317	17	4.4	16	79	16	85	54	2	0	42	1.14
41265018--41265113	41	2.3	41	90	0	147	32	5	23	38	1.77
41268168--41268230	24	2.6	24	89	0	90	26	12	7	52	1.67
41270143--41270189	24	2.0	24	91	0	76	27	12	4	55	1.56
41270151--41270205	24	2.3	24	84	6	67	30	14	5	49	1.66
41270991--41271038	14	3.2	14	75	13	51	22	8	4	64	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41280250--41280314	32	2.0	32	90	0	103	29	4	13	52	1.61
41280853--41281602	222	3.4	221	96	1	1401	35	11	18	34	1.87
41283331--41283465	60	2.3	59	83	5	175	39	11	8	40	1.73
41296456--41296498	19	2.4	19	80	7	54	62	0	0	37	0.95
41301633--41301807	85	2.0	86	86	1	244	27	25	20	26	1.99
41301633--41301807	43	4.1	43	83	1	226	27	25	20	26	1.99
41301786--41301822	18	2.1	18	94	0	65	24	40	10	24	1.87
41301745--41301862	61	1.9	61	91	0	191	25	30	16	27	1.97
41301804--41301933	43	3.0	43	86	0	188	28	25	17	28	1.98
41301701--41301907	104	2.0	103	85	0	279	27	27	17	28	1.98
41302393--41302424	13	2.5	13	100	0	64	46	31	6	15	1.71
41305508--41305592	42	2.0	42	84	4	109	30	27	12	29	1.93
41307384--41307499	41	2.8	41	77	0	124	24	25	13	37	1.92
41307329--41307499	82	2.1	82	81	2	191	25	23	16	33	1.95
41307888--41307929	21	2.0	21	85	0	57	21	4	11	61	1.48
41308840--41308878	16	2.3	17	91	8	62	43	5	5	46	1.48
41309000--41309140	41	3.5	41	84	0	176	14	32	22	29	1.94
41312599--41312629	13	2.4	13	100	0	62	32	9	19	38	1.84
41314082--41314160	17	4.4	17	75	13	68	50	1	0	48	1.08
41315688--41316187	162	3.1	162	90	0	793	25	17	13	44	1.84
41316238--41316376	58	2.4	58	97	0	260	32	27	3	36	1.74
41316236--41316376	29	4.9	29	73	18	132	31	27	3	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41316302--41316481	97	1.9	96	82	6	231	29	30	6	33	1.83
41323572--41323606	1	35.0	1	94	0	61	0	97	0	2	0.19
41327448--41327491	20	2.2	20	100	0	88	61	0	0	38	0.96
41327611--41327662	22	2.3	21	78	18	52	46	1	0	51	1.12
41327613--41327662	21	2.2	22	79	13	57	48	2	0	50	1.12
41328185--41328228	20	2.3	20	88	7	65	36	0	6	56	1.26
41328188--41328247	22	2.8	20	76	14	57	38	0	6	55	1.27
41332543--41332586	21	2.1	21	83	8	54	40	0	2	56	1.11
41332609--41332666	24	2.5	23	75	10	55	48	1	1	48	1.22
41334991--41335017	6	4.5	6	100	0	54	29	51	18	0	1.46
41341227--41341288	28	2.2	28	97	0	115	45	3	4	46	1.40
41341343--41341383	21	2.0	21	90	0	64	39	2	7	51	1.43
41344777--41344837	6	10.7	6	75	10	56	57	0	1	40	1.08
41344778--41344846	17	4.1	17	83	3	86	56	1	1	40	1.17
41348909--41348971	31	2.1	30	85	8	83	30	15	15	38	1.89
41350481--41350554	31	2.4	30	80	12	80	35	5	21	37	1.77
41362040--41362075	18	2.1	18	89	5	56	41	8	0	50	1.33
41362040--41362083	18	2.5	18	85	3	54	36	9	2	52	1.46
41362197--41362248	21	2.5	21	79	14	63	65	5	1	26	1.26
41362205--41362244	21	1.9	21	94	0	71	65	7	2	25	1.32
41367184--41367212	3	9.7	3	100	0	58	65	0	0	34	0.93
41371435--41371952	264	2.0	264	91	1	842	33	17	12	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41376782--41376829	16	3.2	16	67	27	50	29	10	8	52	1.65
41379866--41379891	2	13.0	2	100	0	52	50	0	50	0	1.00
41380453--41380828	187	2.0	189	87	2	551	21	10	24	43	1.83
41380697--41380990	158	1.9	158	85	5	416	22	11	22	43	1.85
41393205--41393253	24	2.0	24	84	0	62	16	0	30	53	1.43
41397682--41397743	13	4.8	13	72	7	54	38	14	4	41	1.67
41397682--41397743	26	2.4	26	88	0	97	38	14	4	41	1.67
41401889--41401929	20	2.0	20	85	0	55	19	0	2	78	0.87
41404734--41404768	16	2.2	16	94	0	61	40	11	5	42	1.65
41410926--41410966	12	2.9	15	75	20	52	31	0	0	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135